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LotjaGi3g1v0437400.2

Overview

Field Value
Gene ID LotjaGi3g1v0437400
Transcript ID LotjaGi3g1v0437400.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Dehydration responsive element binding transcription factor; TAIR: AT2G40340.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|A2WL19|DRE2A_ORYSI Dehydration-responsive element-binding protein 2A; TrEMBL-Plants: tr|I3T500|I3T500_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0437400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:85022224..85022829) extracted from Lotus japonicus Gifu genome v1.2.

ATGTTAGAGAAAGCCGAAAATAAAGGGGATGGATCTAAGTCCCTGCCTAAGATACTAGCCAAATGGAAAGAGTATAATGC TCAGCTTGATTCCTCCAATGATGGGGATAAGCCGGTTCGGAAAGTTCCTGCCAAGGGGTCGAAGAAGGGGTGCATGAAAG GCAAAGGAGGGCCTGAAAACTCGCGATGTAACTACAGAGGTGTTAGGCAAAGGACGTGGGGGAAGTGGGTTGCTGAGATT CGAGAGCCGAACAGAGGGAAAAGGCTCTGGCTAGGTACTTTTGCCACTGCCATTGGAGCTGCTCTTGCATATGATGAAGC GGCCAGGGCAATGTATGGTTCTTCTGCCCGCCTCAACTTTCCTAATGTTGCTGTTTCCAATTTCTCTGAGGAATCTTTGA AAGATTCTTCAGTTGCAAATGATGACTCTGGTTCCTCAATGGCGGCAGTTTTGGCAAATACCGAGTCCAAGGTATCATCA AATAACTCTGGGGTAGGCACAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCCTGAGTGTAAAGCACATGAATGG AGAAGGTGAATCCGGCATAACTTCATCCCCTCCTTTATGCTTGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0437400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTAGAGAAAGCCGAAAATAAAGGGGATGGATCTAAGTCCCTGCCTAAGATACTAGCCAAATGGAAAGAGTATAATGC TCAGCTTGATTCCTCCAATGATGGGGATAAGCCGGTTCGGAAAGTTCCTGCCAAGGGGTCGAAGAAGGGGTGCATGAAAG GCAAAGGAGGGCCTGAAAACTCGCGATGTAACTACAGAGGTGTTAGGCAAAGGACGTGGGGGAAGTGGGTTGCTGAGATT CGAGAGCCGAACAGAGGGAAAAGGCTCTGGCTAGGTACTTTTGCCACTGCCATTGGAGCTGCTCTTGCATATGATGAAGC GGCCAGGGCAATGTATGGTTCTTCTGCCCGCCTCAACTTTCCTAATGTTGCTGTTTCCAATTTCTCTGAGGAATCTTTGA AAGATTCTTCAGTTGCAAATGATGACTCTGGTTCCTCAATGGCGGCAGTTTTGGCAAATACCGAGTCCAAGGTATCATCA AATAACTCTGGGGTAGGCACAGAAGAGGATGTTGATATGGAGCCCATTTCCTTATCCCTGAGTGTAAAGCACATGAATGG AGAAGGTGAATCCGGCATAACTTCATCCCCTCCTTTATGCTTGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0437400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLEKAENKGDGSKSLPKILAKWKEYNAQLDSSNDGDKPVRKVPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEI REPNRGKRLWLGTFATAIGAALAYDEAARAMYGSSARLNFPNVAVSNFSEESLKDSSVANDDSGSSMAAVLANTESKVSS NNSGVGTEEDVDMEPISLSLSVKHMNGEGESGITSSPPLCL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31241
4 165 162 1.5E-79 –
PANTHER
PTHR31241:SF30
4 165 162 1.5E-79 –
MobiDBLite
mobidb-lite
29 59 31 - –
CDD
cd00018
63 123 61 6.17823E-34
IPR001471
Pfam
PF00847
63 113 51 6.1E-13
IPR001471
SUPERFAMILY
SSF54171
64 121 58 5.56E-21
IPR016177
ProSiteProfiles
PS51032
64 121 58 21.799
IPR001471
Gene3D
G3DSA:3.30.730.10
64 123 60 7.7E-32
IPR036955
SMART
SM00380
64 127 64 2.5E-37
IPR001471
PRINTS
PR00367
65 76 12 1.0E-11
IPR001471
PRINTS
PR00367
103 123 21 1.0E-11
IPR001471

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0437400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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