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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0437700 |
Transcript ID | LotjaGi3g1v0437700.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Indole-3-acetic acid-amido synthetase GH3.3, putative; TAIR: AT5G54510.1 Auxin-responsive GH3 family protein; Swiss-Prot: sp|Q9LSQ4|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6; TrEMBL-Plants: tr|A0A0B2QW15|A0A0B2QW15_GLYSO Indole-3-acetic acid-amido synthetase GH3.6; Found in the gene: LotjaGi3g1v0437700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85041916..85045358) extracted from Lotus japonicus Gifu genome v1.2.
CAATCTTCCATATTTCCAATTACATCACTTGTAAATTAATTAAAGTGCCATATTCTACTTTACAATTTCACCCCCATTGT GCACTATCTGATTGGATGATTTCCAAGTTCTCTAACCTTGATCCAACTCTCTTCTTCCCTATATATACTGTACTTCCACT GTGGTATATGTACTCCAACTCACTTCTCTTGTTCTCTTCACTGAACATTTGGTGTTACACTCCAAAATTCAAATTTCTAT TTCTCTAGACATGCCTCAAGCTCCTAAACACTTGCATAACATAACAAATAGCAATACTAATACCACCCATGACAACAATA AAAGAGCACTCAAATTCATTGAAGAGGTCACCAGCAACACAGATGAGATTCAAACAAAGGTCCTTTCCCAGATCCTTTCT CGCAGTGCCCAAGTTGAGTACCTCCAACGCCAGGGCCTAGATGGTCATACAGACAGAAACACTTTCAAGAAGGTCATGCC TGTGGTCACTTACGAGGACCTCAAGCCAGATATTGATCGCATAGCTAATGGTGATGCCTCCCCAATTTTGTGTTCCAAAC CCATATCAGAGTTTCTCACTAGGTGAATATCCCTCTATACATGAACTTAGTGCATGTTTGCTTGCATGAACTTACTTTGT GTTTCGTTACTTGTTGGGTAACCTCATAGTCAATTCTGATATAGAAAAATGATGACAATTAAATGGCAAGCTTGAAAGAG TAGCTTTCTTCGTTAAAAGTAATCATACCAAAATCAATTATAAATTTATAATCAATTTTGGACAATGTTGATCTAAAACA CACAATTTATACATGCGTTATTTAGTTAAGGTGGATGTGGAAATGTATTGTCACAACATTATTCCCTTAGGCACATTATT CCCTTAGGCGGTTTGAATCAAGTTTCCAAACTAATAAACAATTACTTTGACATCTACCTACTATAATTTCTCCACAACAT CTTCGATTAATTTCTCTTTTATCGAAATCAATTCTCACACAGAAAAACTATTAAGTGTGTGTTTGGATTTCTGTTGAACT TAACGTGGATCCACGTTGAAGCTAACGTGTCAAAATCTCACTTCCCGGATTCACGTTAAACTCAACATGTCAAATTCTAA CTTCTCCATTGGTACCTTGAGATACATGAAATCACATTTACGTTGACTCTAACGCCAATATGTACTAAGTGCTCGTTTGT TGGATGAAATTGATTTTGGTAAAATTGAATATGGTAAAATTGAGTTAAAATGAGTTGGAAGTAAAGTGATTTATGTTTAT ATGAACACATAAAAGTGATTTTGCTCAATAGGAAATGATTCTAAAGCTCCCATGCATGGAGGATGTTTGATTCTAATATT AGAATTAATTGTAAAAGTATTTCTAAATATGCACTTTGTATAGAATCCAACTCAATGTTACTTAGAAGTTCAGACTTCAC TGTCTAACGAGAATTAAATTCATTCTAGAGGATTTCACCAAGAATCAATCAAGCTATTAGTTATCTCAGTAACTATACAT CTTTTTGTAGCAACTAATTTTCTTTGGTTTGCTGTTATATTACTTATTGAATGAAGCTCTGGAACCTCTGGTGGGGAGAG AAAACTGATGCCAACAATTGAGGAAGAGCTAGAGAGGAGGTCATTGCTCTATAGCCTATTGATGCCAGTGATGGACCAAT TTGTTCCTGGTTTGGACAAAGGCAAAGGGATGTACTTTCTGTTCATAAAATCAGAAGCCAAAACCCCTGGTGGACTCTTA GCTCGTCCAGTTTTAACCAGCTATTACAAATCCTCACATTTCAAGCACCGCAAAAGCGATCCTTACACCAACTACACCAG CCCCAATGAGACCATCCTCTGCACAGATTCCTATCAGAGCATGTATGCTCAATTGCTCTGTGGACTCTGTCAAAACGAGG ATGTTCTTCGTGTTGGGGCTGTCTTCGCTTCTGGTTTCATCCGCGCCATTAAGTTCCTCGAAAAGCATTTATTTTACTTA TGCCATGACATTAAAACAGGCACCTTGGACCCCAAAATCACTGACCCTTCTGTGAGAGAAGCTGTCTTGAAAATACTCAA ACCAGATCCTAAACTCGCGCGTTTTATTGAATCCCAATGCAGCAATGGATCATCATGGAAGGGGATTATTACTAGGTTAT GGCCAAACACCAAGTATGTTGATGTTATTGTCACAGGAGCAATGTCTCAGTACATTCCTATATTGGACTATTACAGTAAC AATCTCCCTCTTGTCTGCACCATGTATGCTTCTTCTGAGTGCTATTTTGGCTTGAATTTAAACCCTTTGTGTGACCCTAG TGAGGTTTCTTACACCCTCATTCCCACCATGGCCTATTTTGAATTCTTGCCACTGAACAAGGTAAATGAACATGCTGACT CAATTTCTCACTTGGAACAAGAAAATTTAGTGGATCTTGCTGATGTGAAATTGGGTCAAGAGTATGAGCTTGTTGTCACC ACTTATGCAGGTAACTTAACTAATCAATCAAATTTCCAATTCTCTCCAATACCCTGATGGATTTTTTTATATAGTTCTAA ACTTTACTAATCCAATCTTCAAATTCAGGTCTTTACAGGTACCGGGTTGGTGACATACTCCGTGTAGCTGGATTCAAGAA CAAGGCTCCACAATTCAACTTTGTATGCAGAAAGAACGTGGTTCTGAGCATTGATTCTGACAAAACCGATGAAGTTGAGC TGCAAAACGCTGTGCAGATTGCTGCTGAGAATCTTGTTCAGTTTGGTGCATCCCTTATTGATTACACAAGCTGTGTGGAC ACGTCTACAATCCCTGGTCATTACGTTCTGTATTGGGAGATTAACATGAACAATGGGGATACCCCTGTTCCTGGTTCTGC TTTTGAAGAGTGTTGTGTTGCACTTGAAGAATCTCTAAACAGTGTGTATCGTCAGGGCAGGGTATCAGAGAGTATTGGAG CGTTGGAGATCAAGGTGGTGGAGAATGGGACATTTGATAAGCTCATGGATTTTGCTCTGAGCCAGGGTGCTTCTATAAAT CAGTACAAGACACCTCGTTGTGTGAAATTTGCACCACTTGTTGAGCTTCTGAATTCAAGAGTTGTTTCCAGTTACTTCAG TCCTAAATGTCCAAGATGGATTCCTGGTCGCAAGGAGCGGTGCACTTGAAGAGTTGAAACTCTTCAAAAGGAACTAGTAA AACATGTCACTCTAGTTAGGGATGATAGGTCGAGAGACATTCCATAGACATACATGTTAGCGGAGATTTTTAACCTCATA AACATTAGTGACAATTAAAAATCGATGTTAATATGTATGTTCATTGTGTGTCTACCAGAAACATATAAAAAATATATGCT CAATCGTTTTCACAAGTTTTAATATCACTTGGATGTTAAGTTACCTTGTGTGGCCTATTATAGGAATTTTTTTTGCAAGG ATG
CDS sequence (LotjaGi3g1v0437700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCTCAAGCTCCTAAACACTTGCATAACATAACAAATAGCAATACTAATACCACCCATGACAACAATAAAAGAGCACT CAAATTCATTGAAGAGGTCACCAGCAACACAGATGAGATTCAAACAAAGGTCCTTTCCCAGATCCTTTCTCGCAGTGCCC AAGTTGAGTACCTCCAACGCCAGGGCCTAGATGGTCATACAGACAGAAACACTTTCAAGAAGGTCATGCCTGTGGTCACT TACGAGGACCTCAAGCCAGATATTGATCGCATAGCTAATGGTGATGCCTCCCCAATTTTGTGTTCCAAACCCATATCAGA GTTTCTCACTAGCTCTGGAACCTCTGGTGGGGAGAGAAAACTGATGCCAACAATTGAGGAAGAGCTAGAGAGGAGGTCAT TGCTCTATAGCCTATTGATGCCAGTGATGGACCAATTTGTTCCTGGTTTGGACAAAGGCAAAGGGATGTACTTTCTGTTC ATAAAATCAGAAGCCAAAACCCCTGGTGGACTCTTAGCTCGTCCAGTTTTAACCAGCTATTACAAATCCTCACATTTCAA GCACCGCAAAAGCGATCCTTACACCAACTACACCAGCCCCAATGAGACCATCCTCTGCACAGATTCCTATCAGAGCATGT ATGCTCAATTGCTCTGTGGACTCTGTCAAAACGAGGATGTTCTTCGTGTTGGGGCTGTCTTCGCTTCTGGTTTCATCCGC GCCATTAAGTTCCTCGAAAAGCATTTATTTTACTTATGCCATGACATTAAAACAGGCACCTTGGACCCCAAAATCACTGA CCCTTCTGTGAGAGAAGCTGTCTTGAAAATACTCAAACCAGATCCTAAACTCGCGCGTTTTATTGAATCCCAATGCAGCA ATGGATCATCATGGAAGGGGATTATTACTAGGTTATGGCCAAACACCAAGTATGTTGATGTTATTGTCACAGGAGCAATG TCTCAGTACATTCCTATATTGGACTATTACAGTAACAATCTCCCTCTTGTCTGCACCATGTATGCTTCTTCTGAGTGCTA TTTTGGCTTGAATTTAAACCCTTTGTGTGACCCTAGTGAGGTTTCTTACACCCTCATTCCCACCATGGCCTATTTTGAAT TCTTGCCACTGAACAAGGTAAATGAACATGCTGACTCAATTTCTCACTTGGAACAAGAAAATTTAGTGGATCTTGCTGAT GTGAAATTGGGTCAAGAGTATGAGCTTGTTGTCACCACTTATGCAGGTCTTTACAGGTACCGGGTTGGTGACATACTCCG TGTAGCTGGATTCAAGAACAAGGCTCCACAATTCAACTTTGTATGCAGAAAGAACGTGGTTCTGAGCATTGATTCTGACA AAACCGATGAAGTTGAGCTGCAAAACGCTGTGCAGATTGCTGCTGAGAATCTTGTTCAGTTTGGTGCATCCCTTATTGAT TACACAAGCTGTGTGGACACGTCTACAATCCCTGGTCATTACGTTCTGTATTGGGAGATTAACATGAACAATGGGGATAC CCCTGTTCCTGGTTCTGCTTTTGAAGAGTGTTGTGTTGCACTTGAAGAATCTCTAAACAGTGTGTATCGTCAGGGCAGGG TATCAGAGAGTATTGGAGCGTTGGAGATCAAGGTGGTGGAGAATGGGACATTTGATAAGCTCATGGATTTTGCTCTGAGC CAGGGTGCTTCTATAAATCAGTACAAGACACCTCGTTGTGTGAAATTTGCACCACTTGTTGAGCTTCTGAATTCAAGAGT TGTTTCCAGTTACTTCAGTCCTAAATGTCCAAGATGGATTCCTGGTCGCAAGGAGCGGTGCACTTGA
Protein sequence (LotjaGi3g1v0437700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQAPKHLHNITNSNTNTTHDNNKRALKFIEEVTSNTDEIQTKVLSQILSRSAQVEYLQRQGLDGHTDRNTFKKVMPVVT YEDLKPDIDRIANGDASPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMDQFVPGLDKGKGMYFLF IKSEAKTPGGLLARPVLTSYYKSSHFKHRKSDPYTNYTSPNETILCTDSYQSMYAQLLCGLCQNEDVLRVGAVFASGFIR AIKFLEKHLFYLCHDIKTGTLDPKITDPSVREAVLKILKPDPKLARFIESQCSNGSSWKGIITRLWPNTKYVDVIVTGAM SQYIPILDYYSNNLPLVCTMYASSECYFGLNLNPLCDPSEVSYTLIPTMAYFEFLPLNKVNEHADSISHLEQENLVDLAD VKLGQEYELVVTTYAGLYRYRVGDILRVAGFKNKAPQFNFVCRKNVVLSIDSDKTDEVELQNAVQIAAENLVQFGASLID YTSCVDTSTIPGHYVLYWEINMNNGDTPVPGSAFEECCVALEESLNSVYRQGRVSESIGALEIKVVENGTFDKLMDFALS QGASINQYKTPRCVKFAPLVELLNSRVVSSYFSPKCPRWIPGRKERCT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
MobiDBLite | 1 | 21 | 21 | - | – | |
PANTHER | 16 | 603 | 588 | 0.0 | – | |
PANTHER | 16 | 603 | 588 | 0.0 | ||
Pfam | 30 | 575 | 546 | 9.1E-203 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0437700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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