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LotjaGi3g1v0439400.2

Overview

Field	Value
Gene ID	LotjaGi3g1v0439400
Transcript ID	LotjaGi3g1v0439400.2
Related isoforms 1	LotjaGi3g1v0439400.1
Lotus japonicus genome version	Gifu v1.2
Description	Protein THYLAKOID FORMATION1, chloroplastic; TAIR: AT2G20890.1 photosystem II reaction center PSB29 protein; Swiss-Prot: sp\|Q9SKT0\|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic; TrEMBL-Plants: tr\|A0A151RLL4\|A0A151RLL4_CAJCA Uncharacterized protein; Found in the gene: LotjaGi3g1v0439400
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:85240658..85242373) extracted from Lotus japonicus Gifu genome v1.2.

TTACTTGATTTGCAGATGTTCCTCCCCCTGTTTCCGAGACAAAGTTAAGTTTTCTTAAGGCATATAAGCGACCAATCCCT AGTATCTACAACAATGTCCTGCAAGAGCTGATTGTCCAGCAACATTTAATGAAATACAAGGCATCATACCGGTATGACCC TGTGTTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAGGGGTACCCTAGTGATGAGGACAGAGATGCCATCT TCCAAGCCTACATCAATGCATTGAAGGAAGACCCAGAACAATACAGGTTAAAACATTGAGAAATCTTGCTTTATATAGTA TTATGGTTTACTTTAGTGCTTGTTTTGATCAGCGTTGCCAGAATTGATTATGGTAAAAGTGAGTTGAAAGTGATGTGATC TATCTTCGAATAAGTTTATGGAAAGAGTGATTTATATAGTGTAATGTTGTGAAATTCAGTTACGAAACACTCAGTTGATT ATGCCTACCACAGATGCTACCCTCTTTAGCTTCTCTACATAATTGATTTTGGGCCAAAATCAATTCTCTAAGCTCATCGC CAAACATCTATATAACCACCTAATAGTGATTCTGGTCAATGAGAATTGATGCGAAAACTCCCAAATGTGGAACTAGACAC ACACTTAGTTGCATCTCAAGAAAATGTACCTGTGGGAAAAAAATTAACAGACATGATAGCAGCATTATCTCTGTCCTTTT TGTTTTGCAGTGGATTTGAATAAATTGCATCTGAGTTTTTTCTATCTTGCATGAATTGATGTTTTATATTATTATGCTGC ACAGAAAAGATGCACAAAAGTTGGAAGAGTGGGCCCGGGCTCAAAACCCAACTTCCCTGGTTGAGTTTTCATCCAAAGAA GGAGAAGTGGAGGGGATCTTAAAGGATATTGCAGTAAGAGCAGGGGGAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGC TGTAGGCCTCTTTCGTCTTCTTGAGTTGGCAAATGCAACGGAACCAACAATTTTGGAAAAGGTTACTCATTCATTTTAGG CATCATGGCTTATTATTTGAGTTCATTCCAATACTTACTCATGTTATTTTGGTTTTACGAGATGAAGTTGAACCTATAAA CTCTAGTTCTCATTTAGACTAAGCACTAGCAAAATGCAAGCAAGAAACTCTAACATATTTTGAAGTGATTAAATGGCTCA CCTGATATGTCTTCCTCCTAGGATTGTTCTCAATATCAAGATTGCAGAAGTATCAATTTCATACATCTTAGTGAATGTTT GTGGATTTATTATTACTTAATCTTTGGCATCAAAACAACAGCTTTGCGCGGCTTTGAACATTGACAAAAGAAGTGTTGAT CGGGACTTGGATGTGTATCGTAATCTGCTTTCTAGGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGTA AAACTCATCAAACCTTTTAGTACACTTAAGTTGTTTTCTCTTTAGTGGTCATGTCATTAAAGAGAATCCAACCCCTGAAG AACCTGACATTCTTGTTCCAGTAATAGATATGGCTGGTTTACAGTTATAACTTGTTTGTTCTCCTCTTTAAGATTTTGAT TCATTGAAATGATATTTTGCTACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCCGAGCCACAGAAGGCTAATGAGGCCGTT ACAAAATGTTTGGGGCATCAATTGTCTGTCCTGTAG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0439400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAATACAAGGCATCATACCGGTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTATATGATAAACTCATGGAGGG GTACCCTAGTGATGAGGACAGAGATGCCATCTTCCAAGCCTACATCAATGCATTGAAGGAAGACCCAGAACAATACAGAA AAGATGCACAAAAGTTGGAAGAGTGGGCCCGGGCTCAAAACCCAACTTCCCTGGTTGAGTTTTCATCCAAAGAAGGAGAA GTGGAGGGGATCTTAAAGGATATTGCAGTAAGAGCAGGGGGAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCTGTAGG CCTCTTTCGTCTTCTTGAGTTGGCAAATGCAACGGAACCAACAATTTTGGAAAAGCTTTGCGCGGCTTTGAACATTGACA AAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTGCTTTCTAGGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAA TATGTTGACAGGGAGAAGAAGAAAAGAGAAGAAAGGGCCGAGCCACAGAAGGCTAATGAGGCCGTTACAAAATGTTTGGG GCATCAATTGTCTGTCCTGTAG

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Protein sequence (LotjaGi3g1v0439400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKYKASYRYDPVFALGFVTVYDKLMEGYPSDEDRDAIFQAYINALKEDPEQYRKDAQKLEEWARAQNPTSLVEFSSKEGE VEGILKDIAVRAGGKGEFSYSRFFAVGLFRLLELANATEPTILEKLCAALNIDKRSVDRDLDVYRNLLSRLVQAKELLRE YVDREKKKREERAEPQKANEAVTKCLGHQLSVL

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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34793:SF7 View details on PTHR34793:SF7 Search for proteins/transripts with this domain View external data on PTHR34793:SF7	1	183	183	1.4E-111	–
PANTHER	PTHR34793 View details on PTHR34793 Search for proteins/transripts with this domain View external data on PTHR34793	1	183	183	1.4E-111	IPR017499 Show description in modal box View details on IPR017499 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF11264 View details on PF11264 Search for proteins/transripts with this domain View external data on PF11264	2	172	171	1.0E-54	IPR017499 Show description in modal box View details on IPR017499 Search for proteins/transripts with this domain View on EBI InterPro Service
Coils	Coil View details on Coil Search for proteins/transripts with this domain	144	174	31	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010207 View details of GO:0010207 AmiGO InterPro QuickGO	Biological process	Photosystem II assembly	The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.	Subterm of View details of GO:0034622 Part of View details of GO:0019684
GO:0015979 View details of GO:0015979 AmiGO InterPro QuickGO	Biological process	Photosynthesis	The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.	Subterm of View details of GO:0044237

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0439400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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