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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0442200 |
| Transcript ID | LotjaGi3g1v0442200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Phosphatase 2C family protein; TAIR: AT4G03415.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q8GY60|P2C52_ARATH Probable protein phosphatase 2C 52; TrEMBL-Plants: tr|A0A0S3SBJ6|A0A0S3SBJ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0442200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85487049..85489182) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGGTGTTGTGTCTCAACAAGCAGTCGAAGTGCTTGCAGTAGCAGGAGCGATGGAGAAGCGGCCTCTCCGTCCTGTCT AGAAATCGGATTCTGCGGTCAAAAGAGTGCAAGGAGAACATCCTCAGATCTTGTTGGATCTCTGAACAAGTTATCATCCT TACCAAACAGAATTTTCGCTAATGGAAAGAGCAGGTCTTCTTGCATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAA GATGCCATGATTGTATGGGAAGTAAGTATGCTTTTGTTATAATTTATAAACCTATGGTTGATGGTGTTAGTTCTAACTGA ATGAAGATAGATTTTAGAAACTGAAAGACTAGTTCGGACCTTTATTTCAGTATGTTAGAATGTAATTCTGTTAGCATTCT GTTGTGATTAGTTTTCTGTTAAGAGTTAGTGAGTTAGTTTCATAACTGTCTGCTTCCTTTGTAACAGTTAATCGAGTTAG TTTCAATTGTATATAAGCATCTCAAATGTAATCATTTACTGTAGGACTTCATGTCAGAAGATGTGACCTTTTGTGGTGTC TTTGATGGCCATGGTCCACAAGGTCACCTTGTCGCGCACAAAGTCCGGGATGCATTGCCAGTAAAACTGCTTTCATATTT AAATTCCTATGAGTCAAGGGGGAATGCTTCAGGTAAAGCTTCTATTAAGGGGGAAATAAAGCCTGAAACTGAAGAATCTG AGAAGGATTTCTGTGGTGAGGATACACTGAGTGCTATGTGGAGAGAAGCTTTCATGAAGGCATATAAGGCTATGGACAAA GAGCTGAAGTCTCATCCAAATTTGGATTGCTTTTGTAGTGGGAGCACATCTGTAACTATAGTGAAGCAGGTAACTCAAAG AGAAGCATCTATCTATCCTCTTTTGCTTTCTTCTACACATTTCTTACTTTCTTCACTTTCCAGGGTTCAAGTTTGTTCAT GGGGAGTATTGGAGATTCGCGAGCAGTCATGGGAACCAAGGACAGCAATGACTTGATGGTGGCAATTCAGCTTACTGTTG ATTTGAAGCCTGATTTGCCAAGTGTGTCATCTGCCACCATCATTCATATTTTCTGTGTTGAATTTTTGTTTTTCACTTGA TGTTAACTTATTTAAATTTGGATGTATATTCTTATAGGAGAAGCAGAAAGAATTAAACGGTGCAAGGGCAGGGTATTTGC AATGCAAGATGAGCCAGAAGTTCCAAGGGTGTGGTTACCTTTTGATGATGCACCTGGATTAGCCATGGCTAGAGCATTTG GAGATTTTTGCTTGAAGGAGTATGGTGTGATATCTATACCTGAGTTTTCTCATCGGCTGCTCACGGACAGAGATCAGTTC ATTGTTCTTGCCTCTGATGGGGTAAGAATTTTCAATCTTGTACCTATTTTTTATTTGTCCTAGCATGTTTGGATCAACTA ATTGTTTCTCACAATCAATTCCAGCACGAAAAAAGTTACGCATAAAAGCTTCTCCTTAGAATTGATTCTGACTTTATAAT CAATTATAACAGAATTTCCAAGCATGCACTTAGAATTTCTGTTTAGTTTTACGCTAATTAACTTGACGCTTCAATCCACC TTTCCAGAAGTTTAATGTTAGCACTGAAAACTAACCTTCTCTTGATGCTTGGAGTGACAAGTGCAGGTGTGGGATGTTTT GAGCAATGAAGAGGTGGTTAAGATAGTATCTTCAGCACCAACTCGATCAGCAGCAGCAAGAGTTCTGGTTGATTCTGCTG CTAGAGAGTGGAGACTTAAATATCCTACTTCAAAAATGGATGATTGTGCTGTTGTGTGTCTATTTTTGGATGGCAAAATG GACTCAGAATTCGAGTGCGATGAGCAGTGCTTTTCTTCTGCAACCATCCAGGGCAATCCTTCGGGTAACCCAGCTGAGTC AGATGAAGGTCAAAAGTCTGAGCCATCTCTGCAAAGGAACAACACTGTGAGATCCTCAGAAGATGAGACCAGCGGAGGAC GAGGAGTAGGTGTTGTTGCTGAAGACGGAACATCATCAGCTGAAGATCAAAACTGGTCAGGTCTAGAGGGTGTTACCCGA GTAAACTCACTGGTTCAACTTCCTAGGTTTTCTGAGGAAAGGCCTAACTCTTGA
CDS sequence (LotjaGi3g1v0442200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGGTGTTGTGTCTCAACAAGCAGTCGAAGTGCTTGCAGTAGCAGGAGCGATGGAGAAGCGGCCTCTCCGTCCTGTCT AGAAATCGGATTCTGCGGTCAAAAGAGTGCAAGGAGAACATCCTCAGATCTTGTTGGATCTCTGAACAAGTTATCATCCT TACCAAACAGAATTTTCGCTAATGGAAAGAGCAGGTCTTCTTGCATATTTACGCAGCAGGGTCGTAAGGGTGTTAATCAA GATGCCATGATTGTATGGGAAGACTTCATGTCAGAAGATGTGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCACAAGG TCACCTTGTCGCGCACAAAGTCCGGGATGCATTGCCAGTAAAACTGCTTTCATATTTAAATTCCTATGAGTCAAGGGGGA ATGCTTCAGGTAAAGCTTCTATTAAGGGGGAAATAAAGCCTGAAACTGAAGAATCTGAGAAGGATTTCTGTGGTGAGGAT ACACTGAGTGCTATGTGGAGAGAAGCTTTCATGAAGGCATATAAGGCTATGGACAAAGAGCTGAAGTCTCATCCAAATTT GGATTGCTTTTGTAGTGGGAGCACATCTGTAACTATAGTGAAGCAGGGTTCAAGTTTGTTCATGGGGAGTATTGGAGATT CGCGAGCAGTCATGGGAACCAAGGACAGCAATGACTTGATGGTGGCAATTCAGCTTACTGTTGATTTGAAGCCTGATTTG CCAAGAGAAGCAGAAAGAATTAAACGGTGCAAGGGCAGGGTATTTGCAATGCAAGATGAGCCAGAAGTTCCAAGGGTGTG GTTACCTTTTGATGATGCACCTGGATTAGCCATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAGTATGGTGTGATAT CTATACCTGAGTTTTCTCATCGGCTGCTCACGGACAGAGATCAGTTCATTGTTCTTGCCTCTGATGGGGTGTGGGATGTT TTGAGCAATGAAGAGGTGGTTAAGATAGTATCTTCAGCACCAACTCGATCAGCAGCAGCAAGAGTTCTGGTTGATTCTGC TGCTAGAGAGTGGAGACTTAAATATCCTACTTCAAAAATGGATGATTGTGCTGTTGTGTGTCTATTTTTGGATGGCAAAA TGGACTCAGAATTCGAGTGCGATGAGCAGTGCTTTTCTTCTGCAACCATCCAGGGCAATCCTTCGGGTAACCCAGCTGAG TCAGATGAAGGTCAAAAGTCTGAGCCATCTCTGCAAAGGAACAACACTGTGAGATCCTCAGAAGATGAGACCAGCGGAGG ACGAGGAGTAGGTGTTGTTGCTGAAGACGGAACATCATCAGCTGAAGATCAAAACTGGTCAGGTCTAGAGGGTGTTACCC GAGTAAACTCACTGGTTCAACTTCCTAGGTTTTCTGAGGAAAGGCCTAACTCTTGA
Protein sequence (LotjaGi3g1v0442200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCCVSTSSRSACSSRSDGEAASPSCLEIGFCGQKSARRTSSDLVGSLNKLSSLPNRIFANGKSRSSCIFTQQGRKGVNQ DAMIVWEDFMSEDVTFCGVFDGHGPQGHLVAHKVRDALPVKLLSYLNSYESRGNASGKASIKGEIKPETEESEKDFCGED TLSAMWREAFMKAYKAMDKELKSHPNLDCFCSGSTSVTIVKQGSSLFMGSIGDSRAVMGTKDSNDLMVAIQLTVDLKPDL PREAERIKRCKGRVFAMQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRLLTDRDQFIVLASDGVWDV LSNEEVVKIVSSAPTRSAAARVLVDSAAREWRLKYPTSKMDDCAVVCLFLDGKMDSEFECDEQCFSSATIQGNPSGNPAE SDEGQKSEPSLQRNNTVRSSEDETSGGRGVGVVAEDGTSSAEDQNWSGLEGVTRVNSLVQLPRFSEERPNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| MobiDBLite | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 21 | 21 | - | – | |
| PANTHER | 9 | 419 | 411 | 2.6E-190 | – | |
| PANTHER | 9 | 419 | 411 | 2.6E-190 | ||
| SMART | 55 | 368 | 314 | 7.5E-67 | ||
| Gene3D | 56 | 372 | 317 | 3.1E-76 | ||
| SUPERFAMILY | 60 | 372 | 313 | 9.02E-58 | ||
| CDD | 65 | 370 | 306 | 2.9965E-70 | ||
| ProSiteProfiles | 66 | 370 | 305 | 45.07 | ||
| Pfam | 140 | 348 | 209 | 5.5E-37 | ||
| MobiDBLite | 391 | 423 | 33 | - | – | |
| MobiDBLite | 391 | 452 | 62 | - | – | |
| MobiDBLite | 438 | 452 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi3g1v0442200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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