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LotjaGi3g1v0442300.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0442300
Transcript ID	LotjaGi3g1v0442300.1
Lotus japonicus genome version	Gifu v1.2
Description	Photosystem II Psb27 protein; TAIR: AT1G03600.1 photosystem II family protein; Swiss-Prot: sp\|Q9LR64\|PB27A_ARATH Photosystem II repair protein PSB27-H1, chloroplastic; TrEMBL-Plants: tr\|A0A072VAN9\|A0A072VAN9_MEDTR Photosystem II Pbs27 protein; Found in the gene: LotjaGi3g1v0442300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:85506885..85508171) extracted from Lotus japonicus Gifu genome v1.2.

CTACTTAAAATCTAGTTTGAACTATTTGAGGACACCTTAGGAATTGACCAAAAAAAAAAAAAGGACACCTTAGGATGTGG ATCTATACCTTACAAATCATTGGTTGCTTTCTCATCCAAGAAACCAAAACATAGATAAGGTGATAAGGCCACATGGCAGA AACTCAATACCTCATCCTCGTTAACTCCCACTTTCTTTCTCCTTCTCTCAATTCCTTCACCCATCGATCACCATGGCCTC CCCAACACTCATAACTCCAACCTCCACACCAAAATCACTACCACCCATCAAACCCAGACCCACCACCGCCATTGCCGCCA CTCTGTCACCAACCACCACCACCACCGCGAACCCCCGCCGCCGTGAGTTCCTCTCCATCACGGCCTCAGTTCTCTCCGGC ACATGGCTGTGTCACGTGACCCCTGCACTGGCTGCCGAGGACGAAGAGTACGTGAGAGAAACAGAAGAAGTGATCAACAA GGTGAGAACCACCATCACAATGGACAAGAACGACCCCAACGTTGCTGATGCGGTTGCTGACTTGAGAGACTCGTCGAACT CGTGGGTGGCTAAGTACAGAAAGGAGAAAGCGCTTCTTGCAAGGGTTTCCTTCAGGGACGTGTACTCTGCTCTCAATGCG GTTTCAGGGCACTACATCAGTTTTGGACCAACCGCTCCGATTCCGGCGAAGCGAAGGGCGAGGATTTTGGAGGAGGTGGA GGTTGCTGAGAAGGCACTTCTAAGGGGAAGATGAACGGAAAACACTTTCAGCTGCTGCTGGATTTGAGAGGAAAGAAAAT TTCTTATTTTCACATTCCTCTGTTTTCCTCTGTAGATTCGTTTCTTCTTCTCTGTTCTTGCTGAGTGCTTGGTTTTTGTA TTATTATTGTATGATAACTCAAACTGAAATTACAGTAAGAGGCTCACATTCTCTGTTAATTCAGAAGAGAAGATTATGTA TGCAGGCATAGAATCTAAGTAAAATTATGAAATATCTCTTTGAATTAACTTATTATGGGGTTCACAATGTCGGTTTCTTT TCAACAGTTTTCTTATTATTATAGTATAATTTGTGCATTTTTCCTCAATTGTAATTTAGAGCATGCTTAGATGATAATTG TAAACCATGGTTTGATATAATGTAATTTGAGAGTTGAAGTGATTTTGGAGGAATATTATGTTGAACAAAAGTCAGTTCAC ATTAGAATTTGGGATATCTTAACAGGCACTTGAAAGTGTAAGACAATGTTTAGAGGCTTGGTGACTATTCCTAACTTGCT ATGGATG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0442300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCTCCCCAACACTCATAACTCCAACCTCCACACCAAAATCACTACCACCCATCAAACCCAGACCCACCACCGCCAT TGCCGCCACTCTGTCACCAACCACCACCACCACCGCGAACCCCCGCCGCCGTGAGTTCCTCTCCATCACGGCCTCAGTTC TCTCCGGCACATGGCTGTGTCACGTGACCCCTGCACTGGCTGCCGAGGACGAAGAGTACGTGAGAGAAACAGAAGAAGTG ATCAACAAGGTGAGAACCACCATCACAATGGACAAGAACGACCCCAACGTTGCTGATGCGGTTGCTGACTTGAGAGACTC GTCGAACTCGTGGGTGGCTAAGTACAGAAAGGAGAAAGCGCTTCTTGCAAGGGTTTCCTTCAGGGACGTGTACTCTGCTC TCAATGCGGTTTCAGGGCACTACATCAGTTTTGGACCAACCGCTCCGATTCCGGCGAAGCGAAGGGCGAGGATTTTGGAG GAGGTGGAGGTTGCTGAGAAGGCACTTCTAAGGGGAAGATGA

Download CDS Sequence

Protein sequence (LotjaGi3g1v0442300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASPTLITPTSTPKSLPPIKPRPTTAIAATLSPTTTTTANPRRREFLSITASVLSGTWLCHVTPALAAEDEEYVRETEEV INKVRTTITMDKNDPNVADAVADLRDSSNSWVAKYRKEKALLARVSFRDVYSALNAVSGHYISFGPTAPIPAKRRARILE EVEVAEKALLRGR

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR34041:SF1 View details on PTHR34041:SF1 Search for proteins/transripts with this domain View external data on PTHR34041:SF1	1	173	173	3.3E-77	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	1	23	23	-	–
PANTHER	PTHR34041 View details on PTHR34041 Search for proteins/transripts with this domain View external data on PTHR34041	1	173	173	3.3E-77	IPR025585 Show description in modal box View details on IPR025585 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF13326 View details on PF13326 Search for proteins/transripts with this domain View external data on PF13326	18	169	152	1.4E-30	IPR025585 Show description in modal box View details on IPR025585 Search for proteins/transripts with this domain View on EBI InterPro Service
Hamap	MF_01481 View details on MF_01481 Search for proteins/transripts with this domain View external data on MF_01481	41	169	129	22.068	IPR025585 Show description in modal box View details on IPR025585 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:1.20.58.810 View details on G3DSA:1.20.58.810 Search for proteins/transripts with this domain View external data on G3DSA:1.20.58.810	66	173	108	3.7E-35	IPR038450 Show description in modal box View details on IPR038450 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010207 View details of GO:0010207 AmiGO InterPro QuickGO	Biological process	Photosystem II assembly	The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms.	Subterm of View details of GO:0034622 Part of View details of GO:0019684

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0442300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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