Transcript — View — Lotus Base

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LotjaGi3g1v0442600.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0442600
Transcript ID	LotjaGi3g1v0442600.1
Lotus japonicus genome version	Gifu v1.2
Description	Epidermal patterning factor, putative; TAIR: AT2G20875.1 epidermal patterning factor 1; Swiss-Prot: sp\|Q8S8I4\|EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1; TrEMBL-Plants: tr\|A0A072VBC6\|A0A072VBC6_MEDTR Epidermal patterning factor, putative; Found in the gene: LotjaGi3g1v0442600
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:85543682..85545167) extracted from Lotus japonicus Gifu genome v1.2.

TACGTCTATCTCCTTCCTTCATCATTCACCACTCAAGTGCATCTCTTAATTTATACTTCTCAGATACATTAAGAACTACG ACTACCTATATCTCAGAAAAGTTGATCATCAGTAAATTGCGAGATAAGCAATAATGAGAAGGAGTTCTGTGTATGCTGCA GTGGTTCTTCTTTTACTCTACACTTCACTAATCATCTCCGCAAGGCACATAAGCCACTCACACTCACGTAAGTCTCCATT ACTTACAACTTAGTGTGTGTTTGTTTTAACATTTTCATCCGTTCATACAAATTTCAATCCAGAAAAACAGAGTTTTCGAT GGATTAAATGTGCTTTTAGTGAATGGAACTTAATTATATGTGTTTTTACTTTCATTTCAACTATAACCCAAACATACCCT TAATACCGTGTTTGGGAAAACTTACTTCTAGCGTAAAAGCACTTTTGTCTTAATGCAACGTACGTTTCCAACCTCAAACT TGTTTCTCTGTTGAGTGCATACAAATCCGTGAAATTAAAGTTAGTTTGCAAAATTGCCAACTTAACTAAATTTGAATTTC AATTACATCTATCTAAAATTATCCATTAACCATTTTTTTACAACTAACAATTTTTTTTTGAAACTACAACTAACATTACA TTGAACACATATTATTTACAATATGCCGCTTATGCTTTAAAATTGATTTGCAGAAAATCTTTTAACTAGTGAATCGTGTT TTTTTGGTTCAAAGTGATGTATTAATTTAATTAACATGTTAATGAGGCTGTGGTAATTTTTTCATGTTAATCAGGAGGAC ATGGCGGACAAAGGGTGCATTGGGGAGGAAAAGTCCCAACAAAACATAGAAAAGGACCCGACACAATGCAAGTAGCAGGG TCAAGGTTGCCGGATTGTTCTCATGCGTGTGGGTCATGCTCGCCGTGCAGGTTGGTGATGGTCAGCTTCGTTTGTGCATC CATTGCAGAGGCTGAGTCATGTCCAATGGCTTACAAGTGCATGTGCCATAACAAGTCCTACCCTGTCCCATAGAATATGG ATCATTAGATTTGGCACCCCAACCATTAGAAATGTCACCCCACTTACGGAAACTCAGTTTCCGAAATATTTCGGAAATAA GGTTTCCGAAGCACTTTTTTACTCAAAAGTGTGGTTTTTTACTCAAAAGTGTGGTGTTAGATGTATTTTGAACTAAAAAT CACGAATTAATTTCGGAATCTAAGATTCTGAAATAATTCGGAACTTGAAAATCCGAAAATTAGGGGTGTGAAATCTAATG GTTGGGGTGGCAAATCTAGCTCTCATATATATATGCTAGACCAAATAGAGATCTTCCCATGTTTCAATTTTCAAGCTAAG ACTTCTAGCCCCGTGTAACATATATGCGTCCTTTTTCCAGGTTTTCAGAGTCACTTTTTTCTCTGTCTTTTGTTGTTCAA CATTGTAAACAGGGGTTTCTAGCTATGAGCATGGTTTTTGACATAA

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0442600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGAAGGAGTTCTGTGTATGCTGCAGTGGTTCTTCTTTTACTCTACACTTCACTAATCATCTCCGCAAGGCACATAAG CCACTCACACTCACGAGGACATGGCGGACAAAGGGTGCATTGGGGAGGAAAAGTCCCAACAAAACATAGAAAAGGACCCG ACACAATGCAAGTAGCAGGGTCAAGGTTGCCGGATTGTTCTCATGCGTGTGGGTCATGCTCGCCGTGCAGGTTGGTGATG GTCAGCTTCGTTTGTGCATCCATTGCAGAGGCTGAGTCATGTCCAATGGCTTACAAGTGCATGTGCCATAACAAGTCCTA CCCTGTCCCATAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0442600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRRSSVYAAVVLLLLYTSLIISARHISHSHSRGHGGQRVHWGGKVPTKHRKGPDTMQVAGSRLPDCSHACGSCSPCRLVM VSFVCASIAEAESCPMAYKCMCHNKSYPVP

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
SignalP_EUK	SignalP-noTM View details on SignalP-noTM Search for proteins/transripts with this domain	1	23	23	-	–
Phobius	SIGNAL_PEPTIDE View details on SIGNAL_PEPTIDE Search for proteins/transripts with this domain	1	23	23	-	–
Phobius	SIGNAL_PEPTIDE_N_REGION View details on SIGNAL_PEPTIDE_N_REGION Search for proteins/transripts with this domain	1	7	7	-	–
PANTHER	PTHR33109 View details on PTHR33109 Search for proteins/transripts with this domain View external data on PTHR33109	4	110	107	6.0E-40	IPR039455 Show description in modal box View details on IPR039455 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR33109:SF41 View details on PTHR33109:SF41 Search for proteins/transripts with this domain View external data on PTHR33109:SF41	4	110	107	6.0E-40	–
TMHMM	TMhelix View details on TMhelix Search for proteins/transripts with this domain	5	27	23	-	–
Phobius	SIGNAL_PEPTIDE_H_REGION View details on SIGNAL_PEPTIDE_H_REGION Search for proteins/transripts with this domain	8	19	12	-	–
Phobius	SIGNAL_PEPTIDE_C_REGION View details on SIGNAL_PEPTIDE_C_REGION Search for proteins/transripts with this domain	20	23	4	-	–
Phobius	NON_CYTOPLASMIC_DOMAIN View details on NON_CYTOPLASMIC_DOMAIN Search for proteins/transripts with this domain	24	110	87	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	29	52	24	-	–
Pfam	PF17181 View details on PF17181 Search for proteins/transripts with this domain View external data on PF17181	59	108	50	3.6E-15	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0010374 View details of GO:0010374 AmiGO InterPro QuickGO	Biological process	Stomatal complex development	The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells.	Subterm of View details of GO:0009791 View details of GO:0090558

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0442600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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