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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0443000 |
| Transcript ID | LotjaGi3g1v0443000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ethylene-responsive transcription factor; TAIR: AT2G20880.1 Integrase-type DNA-binding superfamily protein; Swiss-Prot: sp|Q9SKT1|ERF53_ARATH Ethylene-responsive transcription factor ERF053; TrEMBL-Plants: tr|I1LUF4|I1LUF4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0443000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:85586584..85589610) extracted from Lotus japonicus Gifu genome v1.2.
CTACTCTCATGGCAGAGCCCTCCTATTGCTACATGTGGAAAGTTTAAAGAAAAGAAACATGAATCTCAAAGTGTGATCAA GAGTAGTGACTGCAAAATGTGACCCAAAGTGGTTGAGCATGAAAGGAATCAGATTGGTGGTGAAGCAAAGACAAAAACGC GTGGGGCCATTATAGCCAACCAATAAAGAAACTTCTACATATTCTCTGTCAAAACTCAAAAGAAAAGTGACATTTAAACC CCTTTCACCACCTCCCTCATATAAAAGCCTCTCCCCTCATCACACATTTCTCCCTCACAACAAAATCTCCCCTGCCTCTC TGCTTTCACCCCCTGAGTGTTCCTCAGCTCACAACAAAAACAGCATCAAAATAACATCATCATCGGAATCCATGAATTCT AATCACCGCTCGCTCTCTCTCTCTGTCTAATCCTTCATTTTGTTCATTCTGTGCACAAAGATTTCAGATGAGTATCTCCA CCAAATTGAAGAGCTTGGGCATCCGATTCTGTTTTTTTATCTGATCGGAGTCCAAAACTTCAGTCTTTCTTTTATTCTCT GACCAAATCTGAATCAGGGTCTTCGAATCTTTCTTCATTTGACACATACCCATCTCATTTTATTCGTGCACACTCCATAA AAGCTCTGTTTTCTGAACTTGAGAGAGCGAGCGGAAGATTATTCATTGGTTCTCATGGCTGAAGCTGATCACAACACTCG CAAGGTTACAAAGATGGGTGAAAGCCAAGATTGGGAGATTCAAAAGGGAAAATTTGAAGATTCCATTGCCCATAACAGGC CTCTCAAGAAGATTCAACGTCGAAATCCAAACCAACAACAACAGCAGCAGCAGCAACCTTCTCCCTCCTCTGTTCCTTCC TCCACAGCTTCCAGAATCGTATTTCCTTTCGCCTTTGACACTTCCCAACAACCTCCAATGCAATTCCCAAACCAGTTAAC TCCTAACTTACCTTATCTCCATCCACCAATGCAATTGCAAACCACACAGCAGCAGCAACAACAGATGATATCTTTCGGTT CCCAACAGCAACAGAACATAGCATATCCACCACTCATAGCCAGAGATTCAACACTGCCACAGCAAAATCAGCAGCAGCAG CAATATCAGCAACATCTTCTTCAGTATTGGAGTGACGCCCTGAATCTAAGTCCAAGAGGAAGGATGATGATGATGCTGAA CAACAACAACACCAGGTTTGGACCACATGGTAGTACTATTAGGCCACCACAACCGATTCAACCAATAAACACAACCAAGC TCTATAGGGGAGTGAGGCAACGCCATTGGGGAAAATGGGTAGCTGAAATTCGTCTTCCTCGCAACCGGACTCGTCTCTGG CTAGGCACGTTCGACACGGCGGAAGACGCTGCCATGGCCTATGACCGTGAGGCCTTCAAGTTGAGAGGGGAGAATGCCAG GCTCAATTTCCCTGAACTGTTTCTCAACAAGGATAAAGACAAAGACAAAGATAAAGATGATAAGGAACCTTCTTGTTCCA CACCAGCTCATACAACAACCTCATCTGCTTCTTCTCCTCCTTCCGGCCACAGCGCCGCCGCCAAGAAGAAGAAGCAGATT GAACCTGCAATTGAAAGCTCTGATGTGCAGCAGCTGCCGCCAACAGAAGAAGAGTCTAATGAGAATGACTCTGGAGTTGG GTCCAGTGGTGATGCCACGGTGATGAGTGATGAGGGTCAAGCAGTTTCACAGGAATTTGTTTGGGGAGAAATGTCAGCAT GGTTCAATGCAATTCCAGCTGCTTGGGGTCCAGGTAGTCCTGTTTGGGATGATAATGATCTTTTTTTACATTCTCACCTT CCTTTTGCTACCAATCCCAATCAACAAGAATTCAATGATGCTGTTGATCATCAAAGACAAGATCATAACATGGGAATGGC ATCAGGTTCTTCCATGAGGCCCTTCTTCTGGAAGGATCAGGATTAAGTTTACTTCAAAACCAGGAAAGGATTTGCTTCTT TCTTAGCTTTCAATTTTCCTCACTGGTTGCAGATATTTTCAGCAAACAACCTGTGAATTGAACTTTGAAGTAGTAGATTC ATTTCCTTGAAATTCTTGTCTGAATTAGATTCAGTCAGGAAGTTTCTTCAGCTGAAATAAGGCTCCAATTATTTCTGGAC CTTTCAGCATCAGGCTCATACTTCATGGGTCTTTTTTACTTTTTTTCTTTTTTAACTCTTATGGTCTGTTTTGTTGGTTG AAGTTATGCAGTTGCAAAGGTAGGTTAGCTAATTAGAATGACCAGAGAAGAAGGAGACAGTTTTGTGATTTCCTTCTTCT CAGTGGTCCATCCGTTCATGAGCTATGTTTTTCAGCTCCAAGGGTGGATTTATATTATGACTTTTCCATTTGTAGTTTGT TCATTTGTATTGTTGTCATGTAATGTATCTATGCTTTCTAAATATTTTATAGAACTTTGCAGTATCGCAGCGTATTCCAT TGTAATTATCATACTTTGATTATGGTTCCCATTTCACCATTCTATTGTTTTGTCCTATTAATATGCTGTTGTTTTGGTAT TATGCTTCCATGGCCAACAGAAGAAAATTTGAAATAGAAAAGAAGGAAGATATTTATATGCAGACCCTACCAATAGTCCC TACCTTAGTGCAGATAATGTGGATTCACGGCAATATATACCAAGTCACCACCGTCTTTGTGAAGCACTAAGAATTTCAAG TTCCCAAAAGTTTGACCACTCACTTTCGCATTATGACACATAAACCAAACCAACTATATTAACATTGCATTCACTATTTC TCTTTGTTCTCTCTTTTTCTCTTTTTGAGTGTCTAAACACTTCAATAGTCTGTCAAATAGTATTTCCTTTCGCGCATATG ATCCATATTGTCAATTGGCATTTTTATTTCCAAAGAGAGAAATAATGTGTGTTTTTAAATTCAAAACCAACTCATATTCA AACATGCTCAAGCATAACTTCATCAATGTGCATTCATCAAGTGCCAATTACAATGAGAAGATTTTGG
CDS sequence (LotjaGi3g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGAAGCTGATCACAACACTCGCAAGGTTACAAAGATGGGTGAAAGCCAAGATTGGGAGATTCAAAAGGGAAAATT TGAAGATTCCATTGCCCATAACAGGCCTCTCAAGAAGATTCAACGTCGAAATCCAAACCAACAACAACAGCAGCAGCAGC AACCTTCTCCCTCCTCTGTTCCTTCCTCCACAGCTTCCAGAATCGTATTTCCTTTCGCCTTTGACACTTCCCAACAACCT CCAATGCAATTCCCAAACCAGTTAACTCCTAACTTACCTTATCTCCATCCACCAATGCAATTGCAAACCACACAGCAGCA GCAACAACAGATGATATCTTTCGGTTCCCAACAGCAACAGAACATAGCATATCCACCACTCATAGCCAGAGATTCAACAC TGCCACAGCAAAATCAGCAGCAGCAGCAATATCAGCAACATCTTCTTCAGTATTGGAGTGACGCCCTGAATCTAAGTCCA AGAGGAAGGATGATGATGATGCTGAACAACAACAACACCAGGTTTGGACCACATGGTAGTACTATTAGGCCACCACAACC GATTCAACCAATAAACACAACCAAGCTCTATAGGGGAGTGAGGCAACGCCATTGGGGAAAATGGGTAGCTGAAATTCGTC TTCCTCGCAACCGGACTCGTCTCTGGCTAGGCACGTTCGACACGGCGGAAGACGCTGCCATGGCCTATGACCGTGAGGCC TTCAAGTTGAGAGGGGAGAATGCCAGGCTCAATTTCCCTGAACTGTTTCTCAACAAGGATAAAGACAAAGACAAAGATAA AGATGATAAGGAACCTTCTTGTTCCACACCAGCTCATACAACAACCTCATCTGCTTCTTCTCCTCCTTCCGGCCACAGCG CCGCCGCCAAGAAGAAGAAGCAGATTGAACCTGCAATTGAAAGCTCTGATGTGCAGCAGCTGCCGCCAACAGAAGAAGAG TCTAATGAGAATGACTCTGGAGTTGGGTCCAGTGGTGATGCCACGGTGATGAGTGATGAGGGTCAAGCAGTTTCACAGGA ATTTGTTTGGGGAGAAATGTCAGCATGGTTCAATGCAATTCCAGCTGCTTGGGGTCCAGGTAGTCCTGTTTGGGATGATA ATGATCTTTTTTTACATTCTCACCTTCCTTTTGCTACCAATCCCAATCAACAAGAATTCAATGATGCTGTTGATCATCAA AGACAAGATCATAACATGGGAATGGCATCAGGTTCTTCCATGAGGCCCTTCTTCTGGAAGGATCAGGATTAA
Protein sequence (LotjaGi3g1v0443000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEADHNTRKVTKMGESQDWEIQKGKFEDSIAHNRPLKKIQRRNPNQQQQQQQQPSPSSVPSSTASRIVFPFAFDTSQQP PMQFPNQLTPNLPYLHPPMQLQTTQQQQQQMISFGSQQQQNIAYPPLIARDSTLPQQNQQQQQYQQHLLQYWSDALNLSP RGRMMMMLNNNNTRFGPHGSTIRPPQPIQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREA FKLRGENARLNFPELFLNKDKDKDKDKDDKEPSCSTPAHTTTSSASSPPSGHSAAAKKKKQIEPAIESSDVQQLPPTEEE SNENDSGVGSSGDATVMSDEGQAVSQEFVWGEMSAWFNAIPAAWGPGSPVWDDNDLFLHSHLPFATNPNQQEFNDAVDHQ RQDHNMGMASGSSMRPFFWKDQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 36 | 36 | - | – | |
| MobiDBLite | 1 | 64 | 64 | - | – | |
| PANTHER | 13 | 395 | 383 | 2.6E-123 | – | |
| PANTHER | 13 | 395 | 383 | 2.6E-123 | – | |
| MobiDBLite | 41 | 64 | 24 | - | – | |
| Gene3D | 195 | 255 | 61 | 8.1E-31 | ||
| CDD | 195 | 255 | 61 | 6.45977E-34 | ||
| ProSiteProfiles | 196 | 253 | 58 | 22.998 | ||
| SUPERFAMILY | 196 | 254 | 59 | 6.54E-23 | ||
| SMART | 196 | 259 | 64 | 1.5E-40 | ||
| Pfam | 197 | 246 | 50 | 3.8E-12 | ||
| PRINTS | 197 | 208 | 12 | 7.2E-11 | ||
| PRINTS | 219 | 235 | 17 | 7.2E-11 | ||
| MobiDBLite | 259 | 274 | 16 | - | – | |
| MobiDBLite | 259 | 336 | 78 | - | – | |
| MobiDBLite | 275 | 291 | 17 | - | – | |
| MobiDBLite | 306 | 336 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0443000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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