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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0447900 |
| Transcript ID | LotjaGi3g1v0447900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC domain-containing protein; TAIR: AT4G28500.1 NAC domain containing protein 73; Swiss-Prot: sp|O49459|NAC73_ARATH NAC domain-containing protein 73; TrEMBL-Plants: tr|A0A072VM12|A0A072VM12_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0447900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86117897..86119912) extracted from Lotus japonicus Gifu genome v1.2.
ATGACAGCTGAGTGCAGTTACCCTGAAGACAATGATAGCATCATTGTGGAGAGGCGCAAAGATAGCTTAATCAGAACTTG TCCTACATGTGGGCACCATGTCAAGTACCAAGATCAGGTTCAGTACTCAACATTTATCATTTTCTTTTTTTCTTTGGTGA AGTTAATGATCTTAGGGTGTCTATTTATAATTTCTTGTCGGGGCGGGTTCACACATAAGATCGAAACCATCTGTCCTCCG TTTGATGTACTCTTTCCTGTTCCACCAATAAATTATGTCTTGTCATTTAGAAATCAACTATGTAAGATTGTAAGGTTATA ACTGTCGTGTCTATACTTTTTTATTGGTGGGATCAGAAAGAAGACACGAAACGGGGACAAAAGGTCTTAACTCTTAATCC GAATAAATATGAAGTGTTAATGTATGTGGTGTTAATTTATTAGGGTGGTGGAATTCATGACTTACCTGGACTGCCTGCTG GAGTGAAGTTTGATCCAACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTTCGCTCTGATATTCACATGCTTCAC CCTTTAATTGATGAGTTCATTCCTACTCTTGAAGGAGAGAATGGAATCTGTTGTACCCATCCAGAGAAGTTGCCAGGTAA ATTAAATAATACAAACCACAAAATACCTGCATGTTGTTGATTTTCCATGTCTTGAACTGAACTGAATTTCTGATAAGGAA TTTCATACATCTTGGTTTTCATTATATATTGATTTCAAACGAAACTGAAGTGTGATTACGGAAAAATAACAGATCGGAGA CACTTTGTTGAAGTAATGCTACTTCAACAAAAAAATGTCTTGGGATGTATTACTTTTCCGTTTTCATATTTTCTAATAGT AGATTAAACTCAGTCAAGATGTTTGGTTTCATGTTTAAACCTTTTAAAATTACTACTTCCCAAAAGTTATCTCTAATAGC TTCTTCAAGAATTACTTCTTCCTCAACATGGATTCAAACACACATTTAATTAATCCAATGGTGATATTATAAATGCATGC CCTCAAAAGTTCCTTCAACCAAACCTTCCATTACAGGAATTCGGATTTCTTGCGGTTAGTAAATTTCAAATTCACTGAAG TCAGGGAACCTCAACCATTTGATCCATCACGGACACTAACTTCAGTGAATTCGAGTTTTCTTAACAGTAAGGACTCTGAG TCCTCCATTAAACATGCTACATTTCACATTTCTTAACATCTGCCATAATAAAACTCTTCATTCATAACATATTCTTAGAA TCCTTTCACGTGAAATCAGGTCCATGTTTCCTCATGTTATCTCGTTCTTTAGGTGATACCGTTTTATCATGTGACATGAG AGAATGTAATACAGGAGGATCCTAATCCTAATTCTAATTGGTTTTATTGTATTCTTTGATATGAATATCTAACATCCAAA CGATGGCTTTCAATAAATTTTACTGCAGGAGTTGGCAAAGATGGCCAGATTCGCCATTTCTTTCACCGGCCATCGAAAGC CTACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACACAGATTCCGATGGGAGCGAGACCCGGTGGCATAAGACAGGGA AGACTAGGCCAGTCTATATCAGTGGCAAGCTGAAAGGTTACAAGAAAATTCTGGTGCTTTACACTAACTACAGAAAGCAG AGAAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAAGAGAAGGAAGGGGAGTTGGT GGTCTCCAAAGTATTCTACCAAACACAGCCTAGACAATGTGGTGGTTCTGGTTCACTTATAAAAGACTCATTTCCTGCAA AAGTACTAAATGGTCACGATCAGGTAGCTAATCATAATCATAATAACAGTGGCTATGTTGAGTACTACAGTAATGCTTCT TCTTTCATATCCTTTGATCAAGGGGAACAGCAACATAGGTCTAACAATGCTCAAGTAATTTCGCATTTTGATGGTGCTCC TTTCATTAATCCTTGA
CDS sequence (LotjaGi3g1v0447900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTGGGCACCATGTCAAGTACCAAGATCAGGTTCAGGTGGTGGAATTCATGACTTACCTGGACTGCCTGCTGGAGTGAA GTTTGATCCAACTGATCAGGAGATTCTTGAACATTTGGAAGCGAAGGTTCGCTCTGATATTCACATGCTTCACCCTTTAA TTGATGAGTTCATTCCTACTCTTGAAGGAGAGAATGGAATCTGTTGTACCCATCCAGAGAAGTTGCCAGGAGTTGGCAAA GATGGCCAGATTCGCCATTTCTTTCACCGGCCATCGAAAGCCTACACAACAGGAACAAGGAAAAGGAGAAAGGTGCACAC AGATTCCGATGGGAGCGAGACCCGGTGGCATAAGACAGGGAAGACTAGGCCAGTCTATATCAGTGGCAAGCTGAAAGGTT ACAAGAAAATTCTGGTGCTTTACACTAACTACAGAAAGCAGAGAAAGCCTGAGAAAACAAACTGGGTCATGCACCAGTAC CACCTTGGCAACAATGAAGAAGAGAAGGAAGGGGAGTTGGTGGTCTCCAAAGTATTCTACCAAACACAGCCTAGACAATG TGGTGGTTCTGGTTCACTTATAAAAGACTCATTTCCTGCAAAAGTACTAAATGGTCACGATCAGGTAGCTAATCATAATC ATAATAACAGTGGCTATGTTGAGTACTACAGTAATGCTTCTTCTTTCATATCCTTTGATCAAGGGGAACAGCAACATAGG TCTAACAATGCTCAAGTAATTTCGCATTTTGATGGTGCTCCTTTCATTAATCCTTGA
Protein sequence (LotjaGi3g1v0447900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MWAPCQVPRSGSGGGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHMLHPLIDEFIPTLEGENGICCTHPEKLPGVGK DGQIRHFFHRPSKAYTTGTRKRRKVHTDSDGSETRWHKTGKTRPVYISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQY HLGNNEEEKEGELVVSKVFYQTQPRQCGGSGSLIKDSFPAKVLNGHDQVANHNHNNSGYVEYYSNASSFISFDQGEQQHR SNNAQVISHFDGAPFINP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 23 | 23 | - | – | |
| PANTHER | 13 | 256 | 244 | 1.8E-145 | – | |
| PANTHER | 13 | 256 | 244 | 1.8E-145 | – | |
| SUPERFAMILY | 18 | 181 | 164 | 4.05E-37 | ||
| ProSiteProfiles | 22 | 181 | 160 | 32.704 | ||
| Pfam | 23 | 162 | 140 | 4.7E-23 | ||
| Gene3D | 31 | 186 | 156 | 2.0E-24 | ||
| MobiDBLite | 95 | 117 | 23 | - | – | |
| MobiDBLite | 101 | 117 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0447900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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