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LotjaGi3g1v0448100.2

Overview

Field Value
Gene ID LotjaGi3g1v0448100
Transcript ID LotjaGi3g1v0448100.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Zinc finger family protein; TAIR: AT1G03840.1 C2H2 and C2HC zinc fingers superfamily protein; Swiss-Prot: sp|Q9ZWA6|IDD3_ARATH Zinc finger protein MAGPIE; TrEMBL-Plants: tr|A0A176WC35|A0A176WC35_MARPO Uncharacterized protein; Found in the gene: LotjaGi3g1v0448100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86129191..86129714) extracted from Lotus japonicus Gifu genome v1.2.

ACAGATCCTGAAGCTGAAGTGATAGCCTTATCACCAAAGACTCTGATGGCCACCAACAGATTCGTGTGTGAGATTTGTCT AAAGGGTTTCCAAAGGGATCAGAATCTCCAACTGCACCGACGCGGCCATAACCTTCCATGGAAGCTCAAGCAGAGGACAA GCAAAGAAGTGAGGAAGAGAGTTTACGTGTGCCCGGAGAAGACGTGCGTCCACCATCACCCTTCAAGGGCTCTGGGGGAC TTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGGGAGAAGAAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGC TGTGCAGTCAGACTGGAAAGCACATTCGAAGACCTGTGGGACTAGAGAATACAAATGTGACTGTGGGACTGTATTTTCAA GGTAGTTTTATATATCTATCTCATCTTGTAGCTAGATCATAACTGTTATTCTTACAGCCCGTTTGGATGCAGACGAAAGA AAGAGCACTAGCTGAAATTTATCTTATTATTACAAAAGCTCTAG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0448100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCACCAACAGATTCGTGTGTGAGATTTGTCTAAAGGGTTTCCAAAGGGATCAGAATCTCCAACTGCACCGACGCGG CCATAACCTTCCATGGAAGCTCAAGCAGAGGACAAGCAAAGAAGTGAGGAAGAGAGTTTACGTGTGCCCGGAGAAGACGT GCGTCCACCATCACCCTTCAAGGGCTCTGGGGGACTTAACTGGGATCAAGAAGCACTTCTGCAGGAAGCACGGGGAGAAG AAGTGGAAGTGCGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGACTGGAAAGCACATTCGAAGACCTGTGGGACTAG AGAATACAAATGTGACTGTGGGACTGTATTTTCAAGACGAAAGAAAGAGCACTAG
Download CDS Sequence

Protein sequence (LotjaGi3g1v0448100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHPSRALGDLTGIKKHFCRKHGEK KWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTVFSRRKKEH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10593:SF120
1 120 120 2.8E-102 –
PANTHER
PTHR10593
1 120 120 2.8E-102 –
Gene3D
G3DSA:3.30.160.60
2 29 28 2.1E-5 –
SUPERFAMILY
SSF57667
5 102 98 2.73E-6
IPR036236
ProSiteProfiles
PS50157
6 28 23 10.305
IPR013087
ProSitePatterns
PS00028
8 28 21 -
IPR013087
Gene3D
G3DSA:3.30.160.60
39 124 86 2.2E-5 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0448100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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