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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0448300 |
| Transcript ID | LotjaGi3g1v0448300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT1G03870.1 FASCICLIN-like arabinoogalactan 9; Swiss-Prot: sp|Q9SIL7|FLA6_ARATH Fasciclin-like arabinogalactan protein 6; TrEMBL-Plants: tr|I3SS63|I3SS63_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0448300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86158045..86160324) extracted from Lotus japonicus Gifu genome v1.2.
GTGGTTAATGGCATCCCGCATATGCCAAGTTTACATTGTCCATTTCTGGTTCATTTGTTAACTAAGGGAATATAATCAAA GGTATGCAAGCCTTGAGCCAGCTCATGCCAACAAAGTCTCAACCTAACACCCTATCCAAATAAAAAACCCACTTCACTTT CTCCACAAACACACCATCCATCTCACTCCACACAAACATGGCATTCTCCAAACCTCTTGCTCTCATTCTCCTCACATTCC TCTCCCTCTTCGCTTCTAAAATCCAAGCCCAAGCCCCGGCACCGGCTCCCTCCGGCCCGGTGAACTTAACCGCAATCCTC GAAAAAGCCGGGCAATACACCACCCTCATCCGCCTCCTCAAGGAATCCCAACAACTCACCCAAATTGAGAGCCAACTCAA CTCCACCACCCAAGGCTTCACCCTCTTCGCCCCGACCGACAACGCCTTCCAAAACCTCAAGTCTGGCGCCATCAATGACC TCACCGATGACCAGAAAGTGAAGCTCATTCTCTACCATGTCACGCCAAAGTACTACTCCCTCTCCGATCTCCAAACAGTG AGCAACCCCGTGAGGACACAGGCTTCTGAGAAAGAAGGCTCTTGGGGGCTTAACTTCAAGGGTCAAGGGAACCAAGTGAA TGTGACCACCGGGGTGGTCACTACTTCTATCAACAACGATTTGAGGCAACAGTTCCCTCTGGCGATTTACCAAGTGGACA AGGTGTTGTTGCCATTGGAGCTTTTTGGAGCCAAGTCTCCATCTTCAGCTCCATCTCCTAAGTCATCTGAAACAACTCCC TCTGATGAGACACCGAGCTCCGGAAAGAAGGGTGGAGCTCCGTCGCCGGCGGCTAGCCAGAAGGATAATGGTGTGGCTGG GAGGAATGTGGGTTTGGGATTGGTTCTTGGGCTTGGATTCATTTGCATGGGAGCTCTCTCTTGATCTCATCATGAGAATT ATAAATTTCTGTTTCATGTTGGTTGTTTCTCTTACACTTTTGTTCTTGTCTCATTTTTCCCGTACAGTCAAAGGGAATTT GGGTTGTGTTTCATACGAGCTTATTCTTTGTGTTTCATTACATTATGAAATCTCGTGTTATAAGGAGTTTCAATTACCTC ACACTTCCAATTTCTCTTCGATTTCATTTCTACTTATTTTTATATTTCTTTTCTTTTTCTTTTTATATCTCTTTTATTTT TGTACATCACACATTTTTCTCTTTTAAGCTTTTCGCTACCCAACTACTTTCAGGAAGTGGAGGTGAATATGAATTGTGAA GATAAAAATTTTCTTATTTTGAATCAAATGAGTTTTAAGGCACACACTCTAGAGTTCAAAACATTAACCATGACAATTGA GTTTTTGTTATGAATTACATGTGATACTAGTTATTAGTTCTCTCACACCAGAGTTTTCTTCTATTCTCTTAAAAAAAAAC ATTAATCGTGATTGTTTTTCATGATTGATATAAATGATCTCTTACTCCATTGTTAATAAGTGCCTGTTTGACGTTGGGAT TGATGTTCCTCCTAAAAGAAGTTACAATTGGGATCGTTGGGATCCAACATGTGAATACACGCGTTTTGACCGTTCAAACA CTCACCCAAACATATCTTAAGAAATTAACATTGACTTATATGGCTAGCGGTGATTTTTAAAATTACCGTAAAATAAATGT GTAATTTTTACGACAGTATGTGTAACTGTTCAAAACCGCTAAAAATATTTTTATCTCTTTTTTTGTATACTTTGCATATT ATTGCGATTTTTTACCGATACAATTTATGTATGTCAATTGATGGTCGACCTTCATGAGCTGGTCCCAATACATTTTCCAT AGCTTAATTGTAATTGTGAGAGTGACACTCAAATGTCAATGATACACCTGACCAGAGCATACATAGTGCAAAACAGCATA TGATCTTCACATTATTTGATTATTTTTAGTTGTGAATGGTATCCCACATGCTATCCCATACACCAGGCTGCCACCACAGT TTTACAACTGTTGTTTGTCCAAACTCTCAACTTGTACATCGACTATAGTATAAAATATTTTCTCCAACGCCCCTCTGGCA TCATCATCACATATGTAACAAAGAAGTATTAATCTCTATGGCTCTTTAATTTCAATATATTACTCACTTAAAAAAAACAA AGAAGCACATAAAATTCCGGTAAAAAAAAAAGCACATAAAAGAACATAATGTATGTTATATAAATTAAAGGGCTTAATTC CACTTTTCGTCCCTGATGTATCACGATTGTGCGATTTGGG
CDS sequence (LotjaGi3g1v0448300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCATTCTCCAAACCTCTTGCTCTCATTCTCCTCACATTCCTCTCCCTCTTCGCTTCTAAAATCCAAGCCCAAGCCCC GGCACCGGCTCCCTCCGGCCCGGTGAACTTAACCGCAATCCTCGAAAAAGCCGGGCAATACACCACCCTCATCCGCCTCC TCAAGGAATCCCAACAACTCACCCAAATTGAGAGCCAACTCAACTCCACCACCCAAGGCTTCACCCTCTTCGCCCCGACC GACAACGCCTTCCAAAACCTCAAGTCTGGCGCCATCAATGACCTCACCGATGACCAGAAAGTGAAGCTCATTCTCTACCA TGTCACGCCAAAGTACTACTCCCTCTCCGATCTCCAAACAGTGAGCAACCCCGTGAGGACACAGGCTTCTGAGAAAGAAG GCTCTTGGGGGCTTAACTTCAAGGGTCAAGGGAACCAAGTGAATGTGACCACCGGGGTGGTCACTACTTCTATCAACAAC GATTTGAGGCAACAGTTCCCTCTGGCGATTTACCAAGTGGACAAGGTGTTGTTGCCATTGGAGCTTTTTGGAGCCAAGTC TCCATCTTCAGCTCCATCTCCTAAGTCATCTGAAACAACTCCCTCTGATGAGACACCGAGCTCCGGAAAGAAGGGTGGAG CTCCGTCGCCGGCGGCTAGCCAGAAGGATAATGGTGTGGCTGGGAGGAATGTGGGTTTGGGATTGGTTCTTGGGCTTGGA TTCATTTGCATGGGAGCTCTCTCTTGA
Protein sequence (LotjaGi3g1v0448300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFSKPLALILLTFLSLFASKIQAQAPAPAPSGPVNLTAILEKAGQYTTLIRLLKESQQLTQIESQLNSTTQGFTLFAPT DNAFQNLKSGAINDLTDDQKVKLILYHVTPKYYSLSDLQTVSNPVRTQASEKEGSWGLNFKGQGNQVNVTTGVVTTSINN DLRQQFPLAIYQVDKVLLPLELFGAKSPSSAPSPKSSETTPSDETPSSGKKGGAPSPAASQKDNGVAGRNVGLGLVLGLG FICMGALS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 24 | 24 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| PANTHER | 8 | 245 | 238 | 2.3E-99 | – | |
| PANTHER | 8 | 245 | 238 | 2.3E-99 | – | |
| Gene3D | 16 | 180 | 165 | 2.7E-17 | ||
| Phobius | 19 | 24 | 6 | - | – | |
| Phobius | 25 | 248 | 224 | - | – | |
| SUPERFAMILY | 30 | 180 | 151 | 3.53E-28 | ||
| ProSiteProfiles | 34 | 177 | 144 | 18.439 | ||
| Pfam | 46 | 179 | 134 | 7.2E-22 | ||
| SMART | 75 | 180 | 106 | 1.4E-24 | ||
| MobiDBLite | 186 | 226 | 41 | - | – | |
| MobiDBLite | 189 | 209 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0448300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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