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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0449000 |
| Transcript ID | LotjaGi3g1v0449000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | TCP family transcription factor TCP4; TAIR: AT1G53230.1 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3; Swiss-Prot: sp|Q9MAH8|TCP3_ARATH Transcription factor TCP3; TrEMBL-Plants: tr|K7M2K4|K7M2K4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0449000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86218398..86222071) extracted from Lotus japonicus Gifu genome v1.2.
ATTGCTGATTACTTGATTGGTTAAAGTCATTAAACCATTTTCCACTCTTTCCATAATTTGTTAATGCTTCATAAGCACCA AGCTCATCAATGCACCCCTTCTTCTAGCTCAGCAAAAGTTCCTCTCTTTTTAACTGAATGATTCAAGAAGCATGATTTTT ATTTGGTGGAAAGGGTTAGCAGTGTAATGAGAATCCACAGTGAGGTAGAGGGTGAATGTCGTTCCTTTTATCGAAATAAA CACAGTTCTTAATAGTGAAATCACATAGTACAGATAGGAAAGGAACCAAAAAAGCTGTTAGATGTCATTATCAGAGGCTT CAAAAAGGTGTGGGTAGAACTGTGGAAGAGATGGCCATTGAGAGTTACCTCTTTATCATCCACAACCTTAATCATAGTTC AACACTAGCACCAACTAGGGTCATTAAACTAAACAGCTTCAACTCAAGGGTATATATTATTACTATTAGATAGGAGAAAG TTGAGGACTTGGTTAAACTCCAAAGAGTTGGAGTTTGTGTCAAAGTCTTCTTCTTACATTTGCGTTTGTGGGGCTAAAAA ACGACCAAAAGATCTTTAATCTCTTCACTCTGCCACACTTTGCAGAAGCATCAACAAGCTCTCATAGGCCAAAGGTACCA TTTTTTTCTCCCTCACTCTCTTTCTTGCAACCCTTCTGAACCCATGTGACATCTCCTCAGCTCTATCAAAAGCTAGATAG ATCACAGAGTTCAATGTCCTATTGTAGTTTGTGTTTTTACCCTCCCAGTACAATCAGTAGTTCAGAGTAACTCTGCATAT TTTTCTGAATTTTTTTTTTGGGATGTCCACTTAAAGAATACCTACCAATAGTCTACTCATTTACTCTGTCCTTTTACTCT TGTAGATAAAAGGCCAGACACATGTGTTGCATATAAATCCCATAAAGAAAGCGTTGAGTAATTTCACTTTTGTTTCTGTG TGTTCATTCTTATATAGTTTTTGGAATGCTACTGCAAGTGTTATTGGATAGGGAATCTTGGGAGATTGCAATTGCAGGTT TTGGTTTTTTGGGATCAGCAAGAGTGGCAGAGTTAAGAGCTGTTTGCAGCTGCAGATGGAGCTGAACAAGCACCAACAGT GAAAAGTAACAGGAAGCATAGCCAAAAACCAAAACCAAAGAGTATCCAAAGTAAAAATTCCATTAGAATAGCAAAAGCAG AAAGCCAGAGATAAAAAGAAGGCCACCAGAAAAGGGAAAAAAAGAAGAATCTGAATCTCAGTGGTAGTCATCATCAGCCA CACATCTAGCAAGAGCACAAAAATCACAAGACAAAGAACAAGTTTTGATCATTCACAACCATATCAGTATGCATATGAAG CAGAAGGTGCAAACACAGGACTAATGAGAATGAAGAGCACTGGGGGAGAAATTATTCATGTTGAAGGAGGCCACATTGTT CGATCCACAGGTAGAAAAGATCGGCATAGCAAGGTTTACACTTCAAAAGGTCCTCGTGACCGCAGGGTTCGGCTATCAGC ACACACCGCCATTCAATTCTACGACGTTCAAGACCGTCTCGGCTACGACCGACCGAGCAAGGCCGTCGACTGGCTCATCA AGAAGGCGAAGTCCGCCATTGACAAGCTTGCTGAGCTTCCTCCATGGCAACCACCTTCTAATCTTGAACAAGTCCAAGAG GCAGAGCAGAATGCAGGGTCAAGTGAGATGGGAATTGCAGAGCAATCTGAGTCCTCTGGCTACAATTTTCACCTCCAGAG ACAACTAGCTGAGGACCCAGATAACCACCACCATAACCAGCAGCACAACCACCAGAACTCAGCATTCATTCCATCATCTA TTGACAATGATGCCATAGCCTTCTTCCCCACAACCACTGCTGCTTCCTCCATAAACTTTCAGAGCTACCCTGCACAGGAC CTTGGCCTTTCTCTTCACTCTTTCCAAGACCATGGTCTCATTCACGCACAATCTCAAACAGGTGGTGGGCAAACTTCCAG TGACCAAACCCTTTTCTCTGGCTCAACTCCCTCTGGGTTTGACACCAATTATCACAGGATTGTTACATGGAACAATGATT CAACCACCACTGACATGAACAGAGGTGGGTTCATGGTGAATTCACCAGCAATTCTAGGCCATGGTACTTCTGCTTATTCC CACAGGGGGACCCTTCAGTCCAGTTTTTCACCATCACTTCGTCCTTGGAATGAGATTCCAATGGCTTCCTCAGATAATCA CAATCACAAGGCAATTCACCAGGCTTCAATCTTTGGCAGCAGGTTTCTCTCTGATGCAATACCTGGGTTCTGCATTCCAG CTAGGATTCAAGGAGAGGATGAGAGCCATGGAGTTTCTTCTGACAGGCCATCCTCTCCTTCACCTAACTCTCATCATCAC TGACCACAAACATGAACTGCACAATGCTGCACTCTTCCCATATCTATCAGGTACACACTGATTTCCCTCTTTGTTTTATT TCTTGGACCATTTACAGCAAACAATATCACTGGGAAAAGGAAATATGGGGTAAGGGACCACTTCATTGGATTTGGCATTT TCACAAACTTGTTATCTTCTGTTTTTAATGGAACTAGGAATGAAAACTCATCAAAGCAATTCCCCATGCAATGGTGCAAA TTAAGTAACCAAGTTATTGCCTTGTGATGCAGGAGCATTGTCTAGCAGATATGATAAAGTGGGAAGATTAGAGAGATGAA CACTATAGAATTTGTCTGGTTGGGTCAAACTTTTTTTATGGCTTTCTTTTCCCTCCCTGTTGCAGCCATTTTCATTGGTG TTTTATGTATTTCTAATTAATGTGAGACTCATCAGCATTTAACTTACATTAGATGTGAGAAGTTTATGTTAGTCTACAAT CCCTTTGAGTAATGTGAGATTGGTGATACATTCATATAATGTAACCTAATCTGATTAATTGTGCTTGCTTTGGAGTTTTA AGCAATATGAGATTAGTGATTTCCAAAAAAGTGTGTAAGTGAGAACAAAATGCCCTGGAAAAATTTCATGTTATAGTGGA GACGGTCCTCAGATTGGTAGGTTATATTAAATTAGGATTAAACTAGATTTTAAACTGTGTTCCAATGTACTCTATAATAT TATTAATTAATTGCTATGCATTATTTGCCTGCATGATTTGGTTTGAGTTGAGTTGGCCATTGGTTTGTGTCTTTTGTAAA TAATACGGACAAACCTCCTCCATGCGACAATAATCCTTAAAGGGAACCCCAATAATGACTAGCTAGAAAATCCCAACTGA AATTCAACAACCTAGCTAGATTCTGACCAAAGCAAAATAAATAATCTTCCCAGGCAAATCCTGCTACAAATGAAAGAACA GTGTGACCCAAACCATTAAGATCCTACCTTTGTCAAACAAACACAAACAATGACCAGAAAGGAAAGGTATGAAAAATGAA ACCGGTAATGTATTAACACTATTTCATTCAATATGGAAGCTGCTTGTTATAGCTTGAGCGGGGCAATTTTTTTCTCACAC ATTTTTTTTGGGATGAAAGAATCACACAATTTTTTTTTCAAAGATCAATTGCAAAGTTAGATCAAGCCCAATAATGGGAT GGAACTAACTCAGTTACAACCTTCTGAACAAAACTATCTTAGCAAAAACAATGAGCAATCTAAGTATACAGGTT
CDS sequence (LotjaGi3g1v0449000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAATGAAGAGCACTGGGGGAGAAATTATTCATGTTGAAGGAGGCCACATTGTTCGATCCACAGGTAGAAAAGATCG GCATAGCAAGGTTTACACTTCAAAAGGTCCTCGTGACCGCAGGGTTCGGCTATCAGCACACACCGCCATTCAATTCTACG ACGTTCAAGACCGTCTCGGCTACGACCGACCGAGCAAGGCCGTCGACTGGCTCATCAAGAAGGCGAAGTCCGCCATTGAC AAGCTTGCTGAGCTTCCTCCATGGCAACCACCTTCTAATCTTGAACAAGTCCAAGAGGCAGAGCAGAATGCAGGGTCAAG TGAGATGGGAATTGCAGAGCAATCTGAGTCCTCTGGCTACAATTTTCACCTCCAGAGACAACTAGCTGAGGACCCAGATA ACCACCACCATAACCAGCAGCACAACCACCAGAACTCAGCATTCATTCCATCATCTATTGACAATGATGCCATAGCCTTC TTCCCCACAACCACTGCTGCTTCCTCCATAAACTTTCAGAGCTACCCTGCACAGGACCTTGGCCTTTCTCTTCACTCTTT CCAAGACCATGGTCTCATTCACGCACAATCTCAAACAGGTGGTGGGCAAACTTCCAGTGACCAAACCCTTTTCTCTGGCT CAACTCCCTCTGGGTTTGACACCAATTATCACAGGATTGTTACATGGAACAATGATTCAACCACCACTGACATGAACAGA GGTGGGTTCATGGTGAATTCACCAGCAATTCTAGGCCATGGTACTTCTGCTTATTCCCACAGGGGGACCCTTCAGTCCAG TTTTTCACCATCACTTCGTCCTTGGAATGAGATTCCAATGGCTTCCTCAGATAATCACAATCACAAGGCAATTCACCAGG CTTCAATCTTTGGCAGCAGGTTTCTCTCTGATGCAATACCTGGGTTCTGCATTCCAGCTAGGATTCAAGGAGAGGATGAG AGCCATGGAGTTTCTTCTGACAGGCCATCCTCTCCTTCACCTAACTCTCATCATCACTGA
Protein sequence (LotjaGi3g1v0449000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRMKSTGGEIIHVEGGHIVRSTGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAID KLAELPPWQPPSNLEQVQEAEQNAGSSEMGIAEQSESSGYNFHLQRQLAEDPDNHHHNQQHNHQNSAFIPSSIDNDAIAF FPTTTAASSINFQSYPAQDLGLSLHSFQDHGLIHAQSQTGGGQTSSDQTLFSGSTPSGFDTNYHRIVTWNNDSTTTDMNR GGFMVNSPAILGHGTSAYSHRGTLQSSFSPSLRPWNEIPMASSDNHNHKAIHQASIFGSRFLSDAIPGFCIPARIQGEDE SHGVSSDRPSSPSPNSHHH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 40 | 40 | - | – | |
| PANTHER | 4 | 338 | 335 | 3.7E-102 | – | |
| PANTHER | 4 | 338 | 335 | 3.7E-102 | ||
| MobiDBLite | 18 | 40 | 23 | - | – | |
| Pfam | 22 | 145 | 124 | 7.1E-34 | ||
| ProSiteProfiles | 24 | 82 | 59 | 32.979 | ||
| MobiDBLite | 84 | 118 | 35 | - | – | |
| MobiDBLite | 91 | 118 | 28 | - | – | |
| MobiDBLite | 318 | 339 | 22 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. |
Expression pattern of LotjaGi3g1v0449000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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