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LotjaGi3g1v0450600.1

Overview

Field Value
Gene ID LotjaGi3g1v0450600
Transcript ID LotjaGi3g1v0450600.1
Lotus japonicus genome version Gifu v1.2
Description DUF538 family protein (Protein of unknown function, DUF538); TAIR: AT5G46230.1 hypothetical protein (Protein of unknown function, DUF538); Swiss-Prot: sp|Q9M015|Y5161_ARATH Uncharacterized protein At5g01610; TrEMBL-Plants: tr|A0A1J6JUD2|A0A1J6JUD2_NICAT Uncharacterized protein; Found in the gene: LotjaGi3g1v0450600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86414327..86414737) extracted from Lotus japonicus Gifu genome v1.2.

ATGGCCGAAAGGGAAGGAGGGATTGTGAAGAAAGGGCATGAAGAAGGCCTGAAAATGGCTGTTTCCCTGCTGCAAGAGTT TGAACTTCCAGCAGGGCTTCTACCTCTGGCTGACGTGATCGAAGTTGGTCATGTGAAAGCCACAGGTTACATGTGGATCG CACAGAAGAAGAAGGTGGAGCACCAGTTCAAGATGGTGAGCAAGCTCGTGAGCTATGACACCGAGATCACAGGGTTCATT TCAAAGAAAAAGATCAAGAAGCTCAAGGGTGTGAAGGCTAAAGAGCTCATGCTATGGCCCCCTGTGAGTGAGATCACTGT TGATGACCAACCAACTGGGAAGGTTCACTTCAAGAGTCTTGCTGGTATCACCAAGACTTTCCCAGTTGAGGCCTTTGCTG CAGGCCAGTGA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0450600.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCCGAAAGGGAAGGAGGGATTGTGAAGAAAGGGCATGAAGAAGGCCTGAAAATGGCTGTTTCCCTGCTGCAAGAGTT TGAACTTCCAGCAGGGCTTCTACCTCTGGCTGACGTGATCGAAGTTGGTCATGTGAAAGCCACAGGTTACATGTGGATCG CACAGAAGAAGAAGGTGGAGCACCAGTTCAAGATGGTGAGCAAGCTCGTGAGCTATGACACCGAGATCACAGGGTTCATT TCAAAGAAAAAGATCAAGAAGCTCAAGGGTGTGAAGGCTAAAGAGCTCATGCTATGGCCCCCTGTGAGTGAGATCACTGT TGATGACCAACCAACTGGGAAGGTTCACTTCAAGAGTCTTGCTGGTATCACCAAGACTTTCCCAGTTGAGGCCTTTGCTG CAGGCCAGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0450600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEREGGIVKKGHEEGLKMAVSLLQEFELPAGLLPLADVIEVGHVKATGYMWIAQKKKVEHQFKMVSKLVSYDTEITGFI SKKKIKKLKGVKAKELMLWPPVSEITVDDQPTGKVHFKSLAGITKTFPVEAFAAGQ
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR31676:SF95
1 136 136 8.3E-76 –
PANTHER
PTHR31676
1 136 136 8.3E-76
IPR007493
Gene3D
G3DSA:2.30.240.10
2 135 134 2.7E-26
IPR036758
SUPERFAMILY
SSF141562
8 133 126 2.22E-36
IPR036758
Pfam
PF04398
21 133 113 1.8E-33
IPR007493

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0450600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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