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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0451700 |
| Transcript ID | LotjaGi3g1v0451700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ethylene-responsive transcription factor; TAIR: AT5G44210.1 erf domain protein 9; Swiss-Prot: sp|Q9FE67|ERF80_ARATH Ethylene-responsive transcription factor 9; TrEMBL-Plants: tr|I3SGY0|I3SGY0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0451700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86515007..86516361) extracted from Lotus japonicus Gifu genome v1.2.
CTCAACAAAGCAAGCACCACTACCTCACACACGTACCTGCATTCTCTCATCAAATCAATCATCATGCGAAAGGCACCCTC ATCGACCACCGTTACGAAGGCGAGAAACACCGCCGCCGCAACCACCGCCGTGAGCGCCAAGAGCAAGATACACAAGCCTT CCAATAATGCAACCGAGGTTCATTTCAGAGGCGTTCGTAAGAGGCCATGGGGCCGTTACGCCGCCGAGATCAGAGATCCC GGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTAGAGCCTACGACGCCGCCGCCCGCCA GTTCCGCGGCCCTAAAGCCAAAACCAACTTCCCCCAATCACCCTCCCCGGACAACAACACCGGACCCAACGACGTCGTCG TCGCTAACGTCAAGGCCAACCAGAGCCCAAGCCAGAGCAGCACCGTGGAATCCTCAACCCCGGAGCGTGACATCACGCGC GGCGGTGGTGTGGTCGTCGACCGCTTCCCCTTCCTCCCGCTGCATCCACAACAACTGATGCCTTTCTCCGGCGGCGGTGA CGTTGTTTACACTGCTCCGGTCCGCCCGGTGATTTTTCTAGATCCGGCTTCTCAGGCCGAGTTTTTCGCCCAGCGGTTCC CTGTCCGATTCGAATCAGGACCGGTCGATTTTACCGGCATGTTTGGCGGTGGTATCCAGAGCGATTCCGATTCGTCCTCC GTCGTGGATTGCCGGCCAAAACCTACACTCAATCTCGATCTTAACCTTGCTCCGCCGAATGAAGCTTAATTTAATTTAAC CCCTTTTTTTAGTTTACTTAAAAAAATTACACACCGTATGTAGTAGCAGAAAGTGAAAAGATGAAGAGCAGAAGCTAGAA AGTAAATTACTGTTGTTTTTTAACGGAAGATTAATCTTCCATTATTTTGAGGAAGATAAGCTGTTAATTAATTGCATCGA TCCTTTGATGTAAATAAATTAATTTTCTGTTTTTAGTTAGTTCTTTTCCATTAACTAGCTTAAAGAGTAAAGACTATGGA TCTGAAATTCTCTGAGATCTGTTGTGACCTTTTGTAACCTCTTAATTTGCAGTAATTCTAGTAGCTGATGTCAATTTTCT CTATTTTTTAATTTCACTTTTTTGCTACTTCAGGTTGCTTTTAATTTACACAATACTATTGGGAAATATACTAATTTTGG TTATCAACTGTATTAAAATATAGTAGTGGGAAAGAAAGTTCGTTTTCCTGAACTAGGTTTGAAATTAATGGAAAATTTAA CGCGTTATCAAACTATGGAAATTTCCGTGGTAGTTGTCATAAAGCATAACAATAAAATATTTGAATTAGCATAGG
CDS sequence (LotjaGi3g1v0451700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAAAGGCACCCTCATCGACCACCGTTACGAAGGCGAGAAACACCGCCGCCGCAACCACCGCCGTGAGCGCCAAGAG CAAGATACACAAGCCTTCCAATAATGCAACCGAGGTTCATTTCAGAGGCGTTCGTAAGAGGCCATGGGGCCGTTACGCCG CCGAGATCAGAGATCCCGGCAAGAAGAGCCGCGTCTGGCTCGGCACCTTCGACACCGCCGAGGAAGCCGCTAGAGCCTAC GACGCCGCCGCCCGCCAGTTCCGCGGCCCTAAAGCCAAAACCAACTTCCCCCAATCACCCTCCCCGGACAACAACACCGG ACCCAACGACGTCGTCGTCGCTAACGTCAAGGCCAACCAGAGCCCAAGCCAGAGCAGCACCGTGGAATCCTCAACCCCGG AGCGTGACATCACGCGCGGCGGTGGTGTGGTCGTCGACCGCTTCCCCTTCCTCCCGCTGCATCCACAACAACTGATGCCT TTCTCCGGCGGCGGTGACGTTGTTTACACTGCTCCGGTCCGCCCGGTGATTTTTCTAGATCCGGCTTCTCAGGCCGAGTT TTTCGCCCAGCGGTTCCCTGTCCGATTCGAATCAGGACCGGTCGATTTTACCGGCATGTTTGGCGGTGGTATCCAGAGCG ATTCCGATTCGTCCTCCGTCGTGGATTGCCGGCCAAAACCTACACTCAATCTCGATCTTAACCTTGCTCCGCCGAATGAA GCTTAA
Protein sequence (LotjaGi3g1v0451700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRKAPSSTTVTKARNTAAATTAVSAKSKIHKPSNNATEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAY DAAARQFRGPKAKTNFPQSPSPDNNTGPNDVVVANVKANQSPSQSSTVESSTPERDITRGGGVVVDRFPFLPLHPQQLMP FSGGGDVVYTAPVRPVIFLDPASQAEFFAQRFPVRFESGPVDFTGMFGGGIQSDSDSSSVVDCRPKPTLNLDLNLAPPNE A
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 34 | 34 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 25 | 25 | - | – | |
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 26 | 240 | 215 | 3.0E-69 | – | |
| PANTHER | 26 | 240 | 215 | 3.0E-69 | – | |
| Gene3D | 39 | 99 | 61 | 4.2E-32 | ||
| SMART | 40 | 103 | 64 | 1.5E-40 | ||
| ProSiteProfiles | 40 | 97 | 58 | 23.894 | ||
| Pfam | 40 | 89 | 50 | 4.5E-14 | ||
| SUPERFAMILY | 40 | 99 | 60 | 7.85E-23 | ||
| CDD | 40 | 99 | 60 | 7.79057E-20 | ||
| PRINTS | 41 | 52 | 12 | 5.0E-11 | ||
| PRINTS | 63 | 79 | 17 | 5.0E-11 | ||
| MobiDBLite | 91 | 140 | 50 | - | – | |
| MobiDBLite | 92 | 134 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0451700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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