Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0453100.3

Overview

Field Value
Gene ID LotjaGi3g1v0453100
Transcript ID LotjaGi3g1v0453100.3
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Dihydroorotase; TAIR: AT4G22930.1 pyrimidin 4; Swiss-Prot: sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial; TrEMBL-Plants: tr|A0A0R0JV11|A0A0R0JV11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0453100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86646755..86649588) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAGCTCACTATTGTTCAACCTGATGATTGGCATCTTCACCTCCGTGATAGGGCCCTCCTTGAAGCTGTCATCCCTCA CAGGTCATTTCGCTTGTTATAGGAAAAACACTCCATGATATTCTGTTATTTCCTAATTTTTTGTGGGGTCAATGTAAGGA ATACTTGCACACATCACATTTTTATAGTTTGGTGTTCATTTTTTTACTGCATTCTCAATGATATTTACAAGTATTCTGAT TCATAACTATCACTCCCACAGTGCAAAGCATTTTGGAAGGGCTATAGTAATGCCGAATTTGAAACCACCCATCACCACCA CAGCTGCTGCTATTGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAAAAATAGCAACTTCACTCCTCTGATGACACTT TACCTAACAGATATGACAACTCCTGATGAGATTAAACTTGCAAGTGAGTCTAATAAGTGGGTTAGGCAAATTTAAGAAAT ATTACCAATGAAATATGAAAAGGAGAAAACTTTAGCTGTGTCAGTAAATTTAATTTGTCTAATATACTTTTATATTTGTA AGTTTTGCTCTGAATCCAGTTAAATGAAAATTCTGTTATCTTCTTTTACCTTGTAGGCTGTAGCTTTTACTTCTTTTTGA CCAGTCTGTATTTATTGTGTATGATGATGTCCGTTCAATCCACTTACAAATTTCTTTCCTGTTGGCAATGACAATCAATA ATCATTTATCATTTTATTAGATCACACTCTCTTTGTCAATCCACCTTTGACCATTTTTATTGCGTAGTAATATAGTGCAC TACTTAACGATGGTGCTTGCATTTACAGAAAAAAGTGGAGTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCAACAAC AAACTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTCTTCATGAAATGGTTGAGCAAGATTTGCCAT TATTGGTAATTTATTTATTTTTAATTGTAGCTCTGTTATGTTTCTTTCTTTATATTGTCTCTCCTTTCCCCAATTTTTCA TTTGTTAGTGTGTGTGAGAGATTATATTTAATGTTCCTGACTAATGTATGAAAATCTATTTCATGCTTTATGTCGCCATG CTTGTCGTGATTAAAGATTCTTGATTCGGAATCATTTATGACGAGTTAAATTGTTCATGAATCAATCGTTACACCTTTGT AGTAGAACGTATTATTTTGGACACAGATTTCAGAGCTGGTCCAAATGAAAATATATACAACTCTTCAATTCTTAACTATG AGCTGGGCGGTGCTCATGGCAAGCCAACCATGGCCCACTGACATGTTTCCTTCTTTATGTATGTTCTTATTTATATATAT CTACTCAAAACTTGTATTGTGCATTTTTTATTTTTTATATGTGAATCAATATCCGTGACAGGTTCATGGAGAGGTTACAA ATCCAGAAGTTGATGTTTTTGACCGGGAAAAGGTCTTCATTGAAACTATCTTAGAGCCTTTAGTTCAAAGGCTTCCACGG CTGAAGGTTGTGATGGAGCATATTACCACCATGGATGCTGTTAAATTTGTAGAATCTTGCAAAGAAGGTATTGTAATAAA ATACATGTGAGAGCCTGTGTCATAGTATTCTACTGGCCAGATGTAAAATCCTCATGATTTGCTATTTTTTTAGGTTATGT TGCAGCAACTGTGACACCACAGCATCTTTTTCTCAATCGTAATGCTTTGTTCCAAGGTGGCTTACAACCTCACAATTACT GTCTTCCAGTGCTCAAAAGAGAGATCCACAGTATGTAATTTTGATTTCTTTCCCATACTGCCTAGAAAGTTTCAAGTTTC AACATATTGTAGGTTTTCTATTGAACTTTTTGGTTGAGATTTTGAAATAATGATTCAGTGACAAATTTTAAAAACTTGAA GTAATGATTTAAAAGTTATGAATTAGATTTCTCTTCTGGTGTTACGTTGTCTTAAGTAAATTAATCAGATCCCTGATTTA TCTGACTTGTATGGGAAAAGAGAAATATGTTTTTAGCACATTGAATGGTCTTTGAAGTTTGAGCATCATTATTCTTCTGT AAATTTTAACTTGGCTGCAGAGAATACACAATCTGATTGAATAGTTTTAGACTTGATTGACTAATTCTAAGTTAGTTTAA ATAAATGTCACTGAGGAATGAGGACAAGGATCATCTTTTAGACAAGTCTGTTACCGAACTGTACATGTCTTGTCATCTTA TCTTGAAGCTTACTTTCTTTAGTTCTTTTTTAGGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGTACACGGTTTTTC CTCGGAACTGATAGTGCTCCACATGATAGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATACAACTCCCTGGT TGCTCTATCCATATATGCGAAGGTTTTTGAAGAGGTAACACTTATTGTAATGCTTGTAATATAATATGCCAAAGTTGGTA TTAGTGTATTCTTTTCACAAGAGCGCATTTGGGTGGTTGAACTGGGATATATGCTTGAGTTTTCGAGATTAATCAGCATT TAGAATCTTATTTTGGATGTTTCCTTCTGAAAGTGTGAGGAGTTTAATCTGTATGTCTTATGAAATTGTTGTTTTATAGG CTGGTGCACTTGATAAGCTGGAGGCTTTTACAAGTTTTAATGGACCTGACTTCTACGGCCTCCCCAGAAACAAGCTAAAG ATTAAACTGAGGAAAGCTCCTTGGAGAGTACCTGAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGG TCAAACACTTGAATGGGAGGCGTTGCTTAATTAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0453100.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGCTCACTATTGTTCAACCTGATGATTGGCATCTTCACCTCCGTGATAGGGCCCTCCTTGAAGCTGTCATCCCTCA CAGTGCAAAGCATTTTGGAAGGGCTATAGTAATGCCGAATTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTT ATCGAGAGTCCATTTTGAAAGCAATACCTAAAAATAGCAACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACA ACTCCTGATGAGATTAAACTTGCAAAAAAAAGTGGAGTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCAACAACAAA CTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTTCTTCATGAAATGGTTGAGCAAGATTTGCCATTAT TGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGGGAAAAGGTCTTCATTGAAACTATCTTAGAGCCT TTAGTTCAAAGGCTTCCACGGCTGAAGGTTGTGATGGAGCATATTACCACCATGGATGCTGTTAAATTTGTAGAATCTTG CAAAGAAGGTTATGTTGCAGCAACTGTGACACCACAGCATCTTTTTCTCAATCGTAATGCTTTGTTCCAAGGTGGCTTAC AACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCACAGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGT ACACGGTTTTTCCTCGGAACTGATAGTGCTCCACATGATAGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATA CAACTCCCTGGTTGCTCTATCCATATATGCGAAGGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTGGAGGCTTTTACAA GTTTTAATGGACCTGACTTCTACGGCCTCCCCAGAAACAAGCTAAAGATTAAACTGAGGAAAGCTCCTTGGAGAGTACCT GAGTATTTGTCATTTCCATTCGGAGATATTGTTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGGCGTTGCTTAATTA A
Download CDS Sequence

Protein sequence (LotjaGi3g1v0453100.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MELTIVQPDDWHLHLRDRALLEAVIPHSAKHFGRAIVMPNLKPPITTTAAAIAYRESILKAIPKNSNFTPLMTLYLTDMT TPDEIKLAKKSGVVYGVKLYPAGATTNSQDGVTDIFGKCYSVLHEMVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEP LVQRLPRLKVVMEHITTMDAVKFVESCKEGYVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGS TRFFLGTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPRNKLKIKLRKAPWRVP EYLSFPFGDIVPMCAGQTLEWEALLN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43137:SF2
1 343 343 8.2E-215 –
PANTHER
PTHR43137
1 343 343 8.2E-215
IPR004721
PIRSF
PIRSF001237
1 345 345 2.9E-145
IPR004721
Hamap
MF_00219
1 344 344 45.99
IPR004721
Gene3D
G3DSA:3.20.20.140
2 344 343 2.2E-108 –
SUPERFAMILY
SSF51556
2 342 341 6.81E-140
IPR032466
TIGRFAM
TIGR00856
2 342 341 4.3E-142
IPR004721
CDD
cd01294
3 341 339 0.0
IPR004721
Pfam
PF01979
10 307 298 3.9E-25
IPR006680
ProSitePatterns
PS00483
246 257 12 -
IPR002195

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004151
Molecular function Dihydroorotase activity Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+).
Subterm of
GO:0016787
Molecular function Hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
Subterm of
GO:0016812
Molecular function Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide.
Subterm of
GO:0019856
Biological process Pyrimidine nucleobase biosynthetic process The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0453100.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…