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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0453100 |
| Transcript ID | LotjaGi3g1v0453100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dihydroorotase; TAIR: AT4G22930.1 pyrimidin 4; Swiss-Prot: sp|O04904|PYRC_ARATH Dihydroorotase, mitochondrial; TrEMBL-Plants: tr|A0A0R0JV11|A0A0R0JV11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0453100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86647044..86649588) extracted from Lotus japonicus Gifu genome v1.2.
ATGCCGAATTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAA AAATAGCAACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACAACTCCTGATGAGATTAAACTTGCAAGTGAGT CTAATAAGTGGGTTAGGCAAATTTAAGAAATATTACCAATGAAATATGAAAAGGAGAAAACTTTAGCTGTGTCAGTAAAT TTAATTTGTCTAATATACTTTTATATTTGTAAGTTTTGCTCTGAATCCAGTTAAATGAAAATTCTGTTATCTTCTTTTAC CTTGTAGGCTGTAGCTTTTACTTCTTTTTGACCAGTCTGTATTTATTGTGTATGATGATGTCCGTTCAATCCACTTACAA ATTTCTTTCCTGTTGGCAATGACAATCAATAATCATTTATCATTTTATTAGATCACACTCTCTTTGTCAATCCACCTTTG ACCATTTTTATTGCGTAGTAATATAGTGCACTACTTAACGATGGTGCTTGCATTTACAGAAAAAAGTGGAGTTGTTTATG GTGTGAAGTTGTATCCTGCTGGTGCAACAACAAACTCCCAAGATGGTGTTACAGATATTTTTGGAAAATGTTACTCTGTT CTTCATGAAATGGTTGAGCAAGATTTGCCATTATTGGTAATTTATTTATTTTTAATTGTAGCTCTGTTATGTTTCTTTCT TTATATTGTCTCTCCTTTCCCCAATTTTTCATTTGTTAGTGTGTGTGAGAGATTATATTTAATGTTCCTGACTAATGTAT GAAAATCTATTTCATGCTTTATGTCGCCATGCTTGTCGTGATTAAAGATTCTTGATTCGGAATCATTTATGACGAGTTAA ATTGTTCATGAATCAATCGTTACACCTTTGTAGTAGAACGTATTATTTTGGACACAGATTTCAGAGCTGGTCCAAATGAA AATATATACAACTCTTCAATTCTTAACTATGAGCTGGGCGGTGCTCATGGCAAGCCAACCATGGCCCACTGACATGTTTC CTTCTTTATGTATGTTCTTATTTATATATATCTACTCAAAACTTGTATTGTGCATTTTTTATTTTTTATATGTGAATCAA TATCCGTGACAGGTTCATGGAGAGGTTACAAATCCAGAAGTTGATGTTTTTGACCGGGAAAAGGTCTTCATTGAAACTAT CTTAGAGCCTTTAGTTCAAAGGCTTCCACGGCTGAAGGTTGTGATGGAGCATATTACCACCATGGATGCTGTTAAATTTG TAGAATCTTGCAAAGAAGGTATTGTAATAAAATACATGTGAGAGCCTGTGTCATAGTATTCTACTGGCCAGATGTAAAAT CCTCATGATTTGCTATTTTTTTAGGTTATGTTGCAGCAACTGTGACACCACAGCATCTTTTTCTCAATCGTAATGCTTTG TTCCAAGGTGGCTTACAACCTCACAATTACTGTCTTCCAGTGCTCAAAAGAGAGATCCACAGTATGTAATTTTGATTTCT TTCCCATACTGCCTAGAAAGTTTCAAGTTTCAACATATTGTAGGTTTTCTATTGAACTTTTTGGTTGAGATTTTGAAATA ATGATTCAGTGACAAATTTTAAAAACTTGAAGTAATGATTTAAAAGTTATGAATTAGATTTCTCTTCTGGTGTTACGTTG TCTTAAGTAAATTAATCAGATCCCTGATTTATCTGACTTGTATGGGAAAAGAGAAATATGTTTTTAGCACATTGAATGGT CTTTGAAGTTTGAGCATCATTATTCTTCTGTAAATTTTAACTTGGCTGCAGAGAATACACAATCTGATTGAATAGTTTTA GACTTGATTGACTAATTCTAAGTTAGTTTAAATAAATGTCACTGAGGAATGAGGACAAGGATCATCTTTTAGACAAGTCT GTTACCGAACTGTACATGTCTTGTCATCTTATCTTGAAGCTTACTTTCTTTAGTTCTTTTTTAGGACAGGCCATTGTTTC AGCTGTCACTGGTGGAAGTACACGGTTTTTCCTCGGAACTGATAGTGCTCCACATGATAGGCGTAACAAGGAATGTTCGT GTGGATGTGCTGGCATATACAACTCCCTGGTTGCTCTATCCATATATGCGAAGGTTTTTGAAGAGGTAACACTTATTGTA ATGCTTGTAATATAATATGCCAAAGTTGGTATTAGTGTATTCTTTTCACAAGAGCGCATTTGGGTGGTTGAACTGGGATA TATGCTTGAGTTTTCGAGATTAATCAGCATTTAGAATCTTATTTTGGATGTTTCCTTCTGAAAGTGTGAGGAGTTTAATC TGTATGTCTTATGAAATTGTTGTTTTATAGGCTGGTGCACTTGATAAGCTGGAGGCTTTTACAAGTTTTAATGGACCTGA CTTCTACGGCCTCCCCAGAAACAAGCTAAAGATTAAACTGAGGAAAGCTCCTTGGAGAGTACCTGAGTATTTGTCATTTC CATTCGGAGATATTGTTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGGCGTTGCTTAATTAA
CDS sequence (LotjaGi3g1v0453100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATTTGAAACCACCCATCACCACCACAGCTGCTGCTATTGCTTATCGAGAGTCCATTTTGAAAGCAATACCTAA AAATAGCAACTTCACTCCTCTGATGACACTTTACCTAACAGATATGACAACTCCTGATGAGATTAAACTTGCAAAAAAAA GTGGAGTTGTTTATGGTGTGAAGTTGTATCCTGCTGGTGCAACAACAAACTCCCAAGATGGTGTTACAGATATTTTTGGA AAATGTTACTCTGTTCTTCATGAAATGGTTGAGCAAGATTTGCCATTATTGGTTCATGGAGAGGTTACAAATCCAGAAGT TGATGTTTTTGACCGGGAAAAGGTCTTCATTGAAACTATCTTAGAGCCTTTAGTTCAAAGGCTTCCACGGCTGAAGGTTG TGATGGAGCATATTACCACCATGGATGCTGTTAAATTTGTAGAATCTTGCAAAGAAGGTTATGTTGCAGCAACTGTGACA CCACAGCATCTTTTTCTCAATCGTAATGCTTTGTTCCAAGGTGGCTTACAACCTCACAATTACTGTCTTCCAGTGCTCAA AAGAGAGATCCACAGACAGGCCATTGTTTCAGCTGTCACTGGTGGAAGTACACGGTTTTTCCTCGGAACTGATAGTGCTC CACATGATAGGCGTAACAAGGAATGTTCGTGTGGATGTGCTGGCATATACAACTCCCTGGTTGCTCTATCCATATATGCG AAGGTTTTTGAAGAGGCTGGTGCACTTGATAAGCTGGAGGCTTTTACAAGTTTTAATGGACCTGACTTCTACGGCCTCCC CAGAAACAAGCTAAAGATTAAACTGAGGAAAGCTCCTTGGAGAGTACCTGAGTATTTGTCATTTCCATTCGGAGATATTG TTCCCATGTGTGCTGGTCAAACACTTGAATGGGAGGCGTTGCTTAATTAA
Protein sequence (LotjaGi3g1v0453100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNLKPPITTTAAAIAYRESILKAIPKNSNFTPLMTLYLTDMTTPDEIKLAKKSGVVYGVKLYPAGATTNSQDGVTDIFG KCYSVLHEMVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEPLVQRLPRLKVVMEHITTMDAVKFVESCKEGYVAATVT PQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGSTRFFLGTDSAPHDRRNKECSCGCAGIYNSLVALSIYA KVFEEAGALDKLEAFTSFNGPDFYGLPRNKLKIKLRKAPWRVPEYLSFPFGDIVPMCAGQTLEWEALLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 307 | 307 | 3.0E-97 | – | |
| TIGRFAM | 1 | 305 | 305 | 3.0E-124 | ||
| Hamap | 1 | 307 | 307 | 36.255 | ||
| CDD | 1 | 304 | 304 | 0.0 | ||
| PANTHER | 1 | 306 | 306 | 1.6E-193 | ||
| PIRSF | 1 | 308 | 308 | 3.2E-127 | ||
| PANTHER | 1 | 306 | 306 | 1.6E-193 | – | |
| SUPERFAMILY | 1 | 305 | 305 | 3.04E-123 | ||
| Pfam | 2 | 270 | 269 | 3.3E-18 | ||
| ProSitePatterns | 209 | 220 | 12 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Dihydroorotase activity | Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+). | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. | ||
| Molecular function | Hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides | Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide. | ||
| Biological process | Pyrimidine nucleobase biosynthetic process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. |
Expression pattern of LotjaGi3g1v0453100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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