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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0454500 |
| Transcript ID | LotjaGi3g1v0454500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Riboflavin synthase; TAIR: AT2G20690.1 lumazine-binding family protein; Swiss-Prot: sp|A5DB51|RISA_PICGU Riboflavin synthase; TrEMBL-Plants: tr|A0A0L9V5H5|A0A0L9V5H5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0454500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86779379..86784545) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTATCTCAAATTCATCTCTACCAAATCACACATAATGGTGTATCTCACATTTATCACTATGTTCTTTCTATCTATAT CATTTTTTTTTTGGTAAATAAAAGTATAAAACACATGGGTTGACCAAAACATTAACCTCTCCAAAAGCTTCAACCCACTG TTCCGGACCACCTGACACAGAGTAGCAGCAATCTGCAGACTCCACCAACCAAATGACAGCTTCAACTTCCTCTCTTCTCA CCTTCACACTCACCACAACCCCAAACATCGCTGCAAATCGCCACCATTCCACATTCACCAATCTCCGATTCAACCCCATA GCCAAACCTTCCCCTCTACGCTTCTTCCTTCCCCTAACTCCTCAAAACCCGCACCACCACCGCCGCCGCAGCGCCGTCGT CACAAACATGTTCACCGGCCTAGTTGAAGAATTGGGCACCGTCAAGCAGCTGGGCATGGCCTCTCACGGCGGCTTTGACT TGAACGTTGAGGCCAAGACTGTCCTGGAGGGTGTCATCCTCGGCGACAGTATTGCTGTCAATGGTACTTGCCTCACGGTG ACGGAGTTTGACCTGGAGGGTTCGAACTTTACGGTTGGGTTGTCGCCGGAGACGCTGAGGAAGACTTCTCTTGAGGAATT GGAACCTGGGTCGGTGGTGAATCTGGAGCGGGCTTTGTTGCCCACGACCCGGATGGGTGGGCATTTTGTGCAGGGTCACG TGGATGGCACGGGGGTGATTGTGTCCATGGATGCTGAAGGGGATTCTTTGTGGGTGAAGGTGAAGGCTGAGAAGGAGGTG CTCAAGTATATTGTGCCAAAAGGGTTTATTGCTGTGGATGGGACTAGTTTGACTGTGGTTGATGTGTTTGATGATGAAGG GTGCTTCAATTTCATGTTGGTGGCTTATACTCAGCAGAAGGTGGTCATTCCTTTGAAGAAGGTTGGGCGGAAGGTGAATC TTGAGGTGGATATCCTTGGAAAGTATGTGGAGAGGCTTCTCAGTAGTGGTTTTGTTCAGTCCATTGCAAATACAAATTCT TGATGCTCTCTGAGGTAACAACACATCTAATGTTCACTATTGTTCTTTGTGCCAGATTACCTTGTTTTCATTTTACTCAT CATGTAAATCCTTATACTCTAACAAATTTGTAATTCATAAGTATTAGATACAGTTATAAACAACTAAAATATTTGAACAG AACTTTTTTCTTTCATATTAATAGATTTATCTTGTTAAAGGCAGAATTTTTTTTTTAGCAATTTTTCCTCTTATTGTAAA AGTTACTTTTTGTTTTGTTGTGAAGACAAGTCTTGATCATTTTCATTGTAGAAAACTTCATGTTGTAGATGTTGTTGAAA CTGGAAGTGTTAGCGTTAGACATAACAAGTTATCGATTAGTGGAAATGTCAATGTTTTTTCACTTTAGAATAACTCCCAG ACAGATTAGTTATTTTTCCTGAATTAGGATATCCACTTTCTATAGGATAAATGATCCAGGAATGAGCATGGTGGTTTTAA TCTGACAAGTTTGACTGCCAAAGATTGAACATATGTTGTGTGATTTACAAGTTACAATAGCTATTGACAACTTTAATTGG AGGATCATCTCAGCAACAGCAAGCAATAACAGCTTGCATTGATATTTGATTGTGAATATTGTACCTTAATCCTAAAATTG TCGAACTCTGCAGGCCTTGTACTGCTCTACAATGCTGCTGGTGAAATCTCAGTGAGACTGAAAGATAATAATACTTGATC TGTTGAAGATCATTGAAAATGTGTATGTGACTGTCATTTCAGCTCCATTATTTTTATATTATGAAACTGCTAGAAGAAAC CTCAGTGTTGGATGATAAACATACTGTGCGATGAAGAGATTGCACTTTGTTCTTTAATTTGAACCCTTCTCCTGAACTTG GTTTAGATCATGCTTGTTCTGAGGGGTTGTGACTTGCGAGCGAGAAGTATCTTTCTCGTTTATTTTCTTCTTTTAATCTC TGCTCCAGGCCAACCACTCTGATAAATTTCAATGGCATTTATCTTTGACAAGGAGCCCTAGGAAATTATTGTGTTAGTGT ATTTGTATTCTAAACAACCAAAGTTTTCCCGTTGAGTATGGCTTAGCTAATCTGCAACAAGGCAGTTTCTCTTAAGCTTA TCTTTTGTCTTGTTTACAAGCACCTAACTCCTCACATCATTTTCTAGGATCGTGCTCTTTTGTCATGTATAAATGAATAC ATGATAATGGGCACTTCTTTTGGTCAACCGTTGTAATTTGGGAAAATTTGTAAAAACTTTGAAAAATCGGCCATGAAACC ATTCAAGTAGTTTGTTGTAGGTGATGGATAAGGCTTTACTTGATTAAAATGATTTCAATTTAGCCCTGCAATCAAATTGG GGGTCCAACATACATGGGATTGGTTGTTGAATAAAGAATCAAAGGCCTGATTTAGAATTTTTGGTGTATTTTTTGCGATT TTTTTAGAATGATGTTTGGGGTTCACTGTTCACCAATCCGGCTCGGACTGGCCACAACTCAGCCATACCACTGGTTCACA TTTGTTTCTCATTCCTACGGTAGTAACTTTCGTTTGTTTGTTTCCCTTGCATCTCTCGCAGCAGCACCCTCTGTGCAGGG CAAGCTTTCTTGATGGAACAACTTCCATTGGTTTTTCCTTAATTGCAATGATAATTTCTCACGCATCCATATTGGATGGT ATGAGAGTTTCAACTCTGATTGGCAATATAATCTGAAAGTAAGTTTTTGCTAGAATCATTTCTTTTGTTGTTGGACTTTC AAAGGTCGTTGGATTTTTCCATGAACTTGTTGATAGGAAAGGAAACCAAAGGTTCATTGAGTCTTTGTTAGGATTACGGA GTCTATCGTTCATTTGGTTGAATGATTGGATAGTTTTGTTTGACTTTAGTGGATTTGGGAGCTGCTTACAAGGTGATACG CAAAACTGATCTAAAGATAGCTCTTTCTAGTGACAGATCTGATAATATTCCAGGAGTTAATGGAATTGAAGATATGCATG CTATCAATTGATTAGTTAATTTGGCACATTGGAGATATTCTTAGAATTTGTCAGCCAAATTTAAGAAGTCCTGTTTTAAT TTGAGGCTAGTTGTGATGATGGAGATCAGTTCTTTCCAAATACCTCAATTGATATTGAAAGTGCTCTTAGTTTTTTTGCC ATCAATGTTAATTCTATTGAATATAGGCATGTGACCCTGATTCCTCGCACTTTTGAGTGTTTGCCCCGAAGAATTAACCA TGCAAGTTTCTTGCTTGCAGTTCACATGGCAGCTGAAGCAGGAAATTCATATCTTTGATTGGGTTACAATAGTTTGGGTG CATTTGCCCCTATTCCTCTAGTTTAACACATATAATCTGGTTTTGTCTTTTCCAAATAAGAAGGCTCCTCTTAAAAGGAT GGCAAAATTAACTGATGCATATTATATGAGCTTCTGGACACCAAAGTTAATCCTGTTGTGTGGAAATTGATGCATCTGTT GAGATGGATGGTAGGTCTCAGTGTGTAGATGAAGTTCATGCAGTTAGCTCCTCAAGCACTTAGACCGGTTCTACTCTCAC GTTAGTTGTGTTAATGCTTACAACTTTCAACCTGCGGGGGATATTAGAAGTTTTTAGGGTCAATTAAACAAAAAACAAAA GAAAAATTATTACTTAGATGATTAGTTAGTTGTGAGTTGGTCATTAGTTAGATTAGAGCTTACACCTAGACAAAATAAGG TGTCCTCAGCTTTGCCACGATCAAATCCAGACTTTTTTCCCCCTAAACTTCCAGGGTCCTAAGCTCATAGGGTAAATCAC TAAACTCAGGTGTTGGATTAGCATTAGAGTAAAGATGTATTTCACTTGGTTCTATGTGTCCTTTTATAAGTCCCTTTATT GTCTCTTGATTTGTTAGAAGTTTTGCTATCATTATGTGCTTTATTGCATATTAAAAGTGATGGAGATGTTCTTAATTGCT TTTGGGGATTACTTACAACTACGTATCATCAGGATTTATTCCCATGGGATCCCTGGTTCTAGACTTCTAGTCAGTTACCT AATGGCATTTACCATCAAGGTGTTTTGAGGAGCGGCGTCTGGGAGTACAATTGACATAAAGATAAACTTTTCTTACTAAC TGCGTTATAATTGTAAGATAACTCAAGGAGACCAAACCCTCCAATTTCAAGTGGTTTGGCAGTTTAAAGGACCACCTCGA GGCCAATTTTTCCTGTGGAAAACAGCCCACTGCAAACTTCTTACAAACATCAAAAGAATGAAGAGGAAGATGACTGACAA TAATCTGTGCCCTCGATGCCTTAGTGCAGAAGAAACAATTATGCATGCCATAAGAGATTGTGAGGCAGTTAAGGAAGTAT GGGAAGGCCTCATTGAAGATCACAACTGGAGCAGATTCTTTAGCCATGGAATTTCATATTGGCTCTGTTATAACCTTGAG AAAGACTTTGTCCATAACAGAGGTTTTAGCTGGCCCTTACTCTTTGGTATCACGATTTGGTACCTCTGGAAAGACCGATG TGACTTGATCTTTAATAACAGATATGTTGTAGCTAATACAATCATGATCCTGATCACTAGCTTCACCTCCCAAATGGTGC ACAATCTCCTTTTTCCAGACAGACAAATCAAAGAAACTCGTACTGAACAACTAATCGGCTGGGGTAAGCCTAGACAAAAG AGCAGCTTGCGGAGGCATCATCAGAGATAGCTCAGGTAAAGTTTATGCTGGCTTCTTCTCTTCCTGGGGGTGTGCAACGC GGTAAGAGTTGAACTTTGGGAAGTTCTCAAAGACCTTAGACTAGTTACATCCCTCATTCCAGCGACGATTATGATTGAAT TGAACTAAAAAACAGCCTATAATCTCATCACAGTTAGATGTCCCATTGATCATCCTTGCGCGGACCTGATTTGGGACACT CAGTACCTAGCTTCCCTGAATTGAGAGGTGAGTTTCAAGTGGATCTATTGAGAGGCCAATCGATGTGCCGGCCACCTTGC TAAGCTTGGACACAACTCTTCGGAAGAGTTTTTTGGACATGGTAATGTTCCCAACTCTCTTATTCCTATTCTAAGAGATG ATATTGTAGGGGTTGCCCAAAATGGTTCCTTAGCTTGTGTTTCCCTG
CDS sequence (LotjaGi3g1v0454500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGCTTCAACTTCCTCTCTTCTCACCTTCACACTCACCACAACCCCAAACATCGCTGCAAATCGCCACCATTCCAC ATTCACCAATCTCCGATTCAACCCCATAGCCAAACCTTCCCCTCTACGCTTCTTCCTTCCCCTAACTCCTCAAAACCCGC ACCACCACCGCCGCCGCAGCGCCGTCGTCACAAACATGTTCACCGGCCTAGTTGAAGAATTGGGCACCGTCAAGCAGCTG GGCATGGCCTCTCACGGCGGCTTTGACTTGAACGTTGAGGCCAAGACTGTCCTGGAGGGTGTCATCCTCGGCGACAGTAT TGCTGTCAATGGTACTTGCCTCACGGTGACGGAGTTTGACCTGGAGGGTTCGAACTTTACGGTTGGGTTGTCGCCGGAGA CGCTGAGGAAGACTTCTCTTGAGGAATTGGAACCTGGGTCGGTGGTGAATCTGGAGCGGGCTTTGTTGCCCACGACCCGG ATGGGTGGGCATTTTGTGCAGGGTCACGTGGATGGCACGGGGGTGATTGTGTCCATGGATGCTGAAGGGGATTCTTTGTG GGTGAAGGTGAAGGCTGAGAAGGAGGTGCTCAAGTATATTGTGCCAAAAGGGTTTATTGCTGTGGATGGGACTAGTTTGA CTGTGGTTGATGTGTTTGATGATGAAGGGTGCTTCAATTTCATGTTGGTGGCTTATACTCAGCAGAAGGTGGTCATTCCT TTGAAGAAGGTTGGGCGGAAGGTGAATCTTGAGGTGGATATCCTTGGAAAGTATGTGGAGAGGCTTCTCAGTAGTGGTTT TGTTCAGTCCATTGCAAATACAAATTCTTGA
Protein sequence (LotjaGi3g1v0454500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTASTSSLLTFTLTTTPNIAANRHHSTFTNLRFNPIAKPSPLRFFLPLTPQNPHHHRRRSAVVTNMFTGLVEELGTVKQL GMASHGGFDLNVEAKTVLEGVILGDSIAVNGTCLTVTEFDLEGSNFTVGLSPETLRKTSLEELEPGSVVNLERALLPTTR MGGHFVQGHVDGTGVIVSMDAEGDSLWVKVKAEKEVLKYIVPKGFIAVDGTSLTVVDVFDDEGCFNFMLVAYTQQKVVIP LKKVGRKVNLEVDILGKYVERLLSSGFVQSIANTNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 20 | 20 | - | – | |
| PANTHER | 59 | 274 | 216 | 2.4E-103 | – | |
| PANTHER | 59 | 274 | 216 | 2.4E-103 | ||
| SUPERFAMILY | 65 | 156 | 92 | 2.89E-21 | ||
| CDD | 66 | 255 | 190 | 9.2989E-91 | ||
| TIGRFAM | 66 | 266 | 201 | 1.0E-63 | ||
| Gene3D | 66 | 156 | 91 | 3.3E-30 | ||
| ProSiteProfiles | 66 | 164 | 99 | 26.312 | ||
| Pfam | 68 | 154 | 87 | 9.2E-22 | ||
| SUPERFAMILY | 160 | 264 | 105 | 5.27E-29 | ||
| ProSiteProfiles | 165 | 263 | 99 | 22.52 | ||
| Pfam | 167 | 253 | 87 | 7.1E-21 | ||
| Gene3D | 169 | 272 | 104 | 4.8E-32 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0454500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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