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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0455400 |
| Transcript ID | LotjaGi3g1v0455400.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tetraspanin family protein; TAIR: AT2G20740.1 Tetraspanin family protein; Swiss-Prot: sp|Q940P5|TET19_ARATH Tetraspanin-19; TrEMBL-Plants: tr|I1LS12|I1LS12_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0455400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86882885..86885402) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTGAGGGTTCTGAGAAGCTGCATGCAATCGATATTGAAGCTGGTTAACTCGGTGATTGGAATGGCTGGGCTAGCCAT GATTCTATACTCGGCTTGGATGATTAGGGTTTGGCAGAGGCAGATGGGCGAGCTTCCATTTGGTCATGATTCTGATTACC CACCTCCATGGTAAAAAAAAATCTCCTTTTTTTTATTGCCCCTTTTTCCTTGTGTTGATGAATGAAAATCCTGGACTTTG ATTGAGCCGTGAAAAATAATAAAGGTGAAAGTTGATTGGAGCAATGAATTAGTATTCGATTTTATGAGATTAATTTATTT TTATTGCCTCTGTTTAACAATTTATTGAATGAAGTTGAAAGATAATGTTATAGATAACCAAGGGAATTATTAGTGTGAGA GTGAATTGTTTGTATGTAACTTGTGTTTGGCATGGTAAAGCTGTTGAGTTCCAAAGTTGCATTCTGTTCACTTGCGAATT GTTAATGGAAAGAGAACCAGTGATTTTAATGTAGTTATGTATAACCTGGATTGTTTGAATGCTGATTTTGTTTGTATTCA TTTTGAGATTTAAACTCGTTTGCACCTATAACTTGTATGCTTTCTATGTTTGAACACATGCATGCATGATGTTTTTGTAA ATTATTGAGTTCTTCTGAACTTTATCTGTATGGATATATTGTGAATAAATTGCTTTTTTCTGCAATCAGGTTCATTTACA CGTTTCTTGGCCTTGGAGTTACGTTCTGTGTAATCACTTGTTCAGGCCATGTTGCTGCTGAAACTGCTAATGGCTGTTGC TTGTATTTGGTATCCTTTTCTTATGACATCCTTAAGCAATATGTTATAATCTAAATTCGATAATTCCAATATTAGACGCT AAAGGTATAGAATATAGAAGATAAAATATTATTTTTTTATGAAATGAATAATGCAATATTAAGGTAGCTGTAATCAGTTA ATAGTTTAAATAAGGAAATACCTTATTATTTGGTCTTTATGCCATTAAAGCGCTGTTGACCTTGATTGCTTTCACTTCAG TATATGGTTTTTGTGGTTTTGCTTATCATGCTGGAGGCTGCAGTTACTGTTGATGTATTTTTAAACCGGGAATGGGAGGA GGTATATTATTTATAATAACACTTCCTCATTAATTCTTTCTGGTAAATCAATTCTTTTGTAGCATTCTCTTCGTTTGACA CGGTCTAACCCATTTTAACTTGAAAATCGGAATCAGGACTTCCCTAAGGACCCCTCTGGGAATTTTGATCAGTTCAAGGA TTTCATCAGGTCAAACTATGAGATGTGTAAATGGGTAGGCCTATCACTTGTTTCTGTACAGGTAAATCTCCCTCCATCCC TCCCTGCGTATGACACTTAACAATTTATGACACAATCACCAATGAAGCCTGATTATGAAATGGTAGGATTTCTCACTATG GGTTTCAGGATGATTCCAAAGTTCTCCACACAAATAAGTTATTCCACACAATGGAACTCTGTCTTCAGTTTTTCTAATTG TCTCAGTAGTTCCGTCATTCTTTTCTGTGAATAGAACATAGAAAGCTTTGTCTCCAAAGTTTGCCAAGTAGAGAAATTTA AGAAGTATTACTGCTGCCCAGGATATGACTGGGGCATCTGTAAAACTAGCAGAGACAAGATAAGCGCTGTACAGCAGCAA CAACTTTTGCACTTATTTTACATAAACAAAAATGAAGAAGAGGGGAATTATTTCTTTTTAACTTGATTCATGTATTTCAC CCTTCTGTAGAAACAATCACTGATTGAAATTTGCAAATTCTAAGATATACAAACTTATATGACAGATACCTAATTACTAA TTAGCATAAGTCTTTGCTATTTTTAACGCAAAGCAGATTGTAAAGCACTTTTGCATGAACTCCCTTTTTTCGCATTGTCA TGACCAGCTTATATCTTCTATACAAAAGAAAGAATGAAAGATCAGTATATATAATTTTTTCCTAACTGTATCCTGCTATG TTTGTTCTTTTTTATACTTAAGCCTGTTTGCCCTGTTACCGGCATTCTGAATGCATATTGAATGACTGAGAGATTGGTGT ATATGATACTCAATCAGTCTGAAACTATTATTCTGTGCATATAATAAGCAAGTAAAAAATGGGGAATTGGTAAACTATTC ACTGTTCGTCTAATCCCTTTGATATGTCGGTGAAATGCATGATTTCTTGTTCTTGGTTACCTATTTCAACTGACTACAAC TGATTTTGAAAATAGAGGATGAAGTTAATTTTGGGATTTGCAATTTCGGCAAATGAATGATGCACTCATGGATGGCTTCC TGTGCCCTTCATTTGCAGGGACTCTCTCTATTGTTGGCAATGATACTCAAAGCTCTTGGGCCACATCAATATTATGACAG TAGTGATGATGAATATTCTCCTGACAGGGTACCACTTTTGAAGAATGCACCTCCATATGTTGTTATTGATCCAGTATATG GCCATGGCCCCAAAAAATGACGCATGCATCAGGATTAG
CDS sequence (LotjaGi3g1v0455400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAGGGTTCTGAGAAGCTGCATGCAATCGATATTGAAGCTGGTTAACTCGGTGATTGGAATGGCTGGGCTAGCCAT GATTCTATACTCGGCTTGGATGATTAGGGTTTGGCAGAGGCAGATGGGCGAGCTTCCATTTGGTCATGATTCTGATTACC CACCTCCATGGTTCATTTACACGTTTCTTGGCCTTGGAGTTACGTTCTGTGTAATCACTTGTTCAGGCCATGTTGCTGCT GAAACTGCTAATGGCTGTTGCTTGTATTTGTATATGGTTTTTGTGGTTTTGCTTATCATGCTGGAGGCTGCAGTTACTGT TGATGTATTTTTAAACCGGGAATGGGAGGAGGACTTCCCTAAGGACCCCTCTGGGAATTTTGATCAGTTCAAGGATTTCA TCAGGTCAAACTATGAGATGTGTAAATGGGTAGGCCTATCACTTGTTTCTGTACAGGGACTCTCTCTATTGTTGGCAATG ATACTCAAAGCTCTTGGGCCACATCAATATTATGACAGTAGTGATGATGAATATTCTCCTGACAGGGTACCACTTTTGAA GAATGCACCTCCATATGTTGTTATTGATCCAGTATATGGCCATGGCCCCAAAAAATGA
Protein sequence (LotjaGi3g1v0455400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRVLRSCMQSILKLVNSVIGMAGLAMILYSAWMIRVWQRQMGELPFGHDSDYPPPWFIYTFLGLGVTFCVITCSGHVAA ETANGCCLYLYMVFVVLLIMLEAAVTVDVFLNREWEEDFPKDPSGNFDQFKDFIRSNYEMCKWVGLSLVSVQGLSLLLAM ILKALGPHQYYDSSDDEYSPDRVPLLKNAPPYVVIDPVYGHGPKK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 3 | 201 | 199 | 5.9E-100 | – | |
| PANTHER | 3 | 201 | 199 | 5.9E-100 | – | |
| Phobius | 12 | 37 | 26 | - | – | |
| Pfam | 12 | 115 | 104 | 5.9E-10 | ||
| TMHMM | 13 | 35 | 23 | - | – | |
| Phobius | 38 | 56 | 19 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| Phobius | 57 | 76 | 20 | - | – | |
| Phobius | 77 | 87 | 11 | - | – | |
| Phobius | 88 | 111 | 24 | - | – | |
| TMHMM | 88 | 110 | 23 | - | – | |
| Phobius | 112 | 142 | 31 | - | – | |
| TMHMM | 143 | 165 | 23 | - | – | |
| Phobius | 143 | 162 | 20 | - | – | |
| Phobius | 163 | 205 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi3g1v0455400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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