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LotjaGi3g1v0456200.1

Overview

Field Value
Gene ID LotjaGi3g1v0456200
Transcript ID LotjaGi3g1v0456200.1
Lotus japonicus genome version Gifu v1.2
Description Transcription factor GTE12; TAIR: AT5G46550.1 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|Q9LS28|GTE12_ARATH Transcription factor GTE12; TrEMBL-Plants: tr|A0A072TEL6|A0A072TEL6_MEDTR Bromodomain protein, putative; Found in the gene: LotjaGi3g1v0456200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:86979553..86980807) extracted from Lotus japonicus Gifu genome v1.2.

TCACATTTCACTGATTACGTTATTCCTTTCTCTCTTGCACAAAACACAAGCTCTCTCCAATGGCATCAATGGCAATGTCA GCAGAGTCATCCCAACCCAGAAAATCACTCATCATTAAGCTTCATTATCCTCGTTCTCTACAGCGTAGTCCTTCTTCTTT TTCTTTATCCTCTGATCAGGCTATGGATTCTCATGCCAAGAAGAGGAAACTACTGGATGATGATTCTTCAAAGCAATCAA GTAAAATCTTCAAGACTCATTCAAGAAGAAACGTGTATGGAGATCAGTTGGAGATGAAGGATTCTCACCGCAAGAACGTT GTTTCCAATGATGATTTTTCTGCAGTGACTACTGCCACAAGGTGTACTGGAACAAGAACTGAAAGAACAGAGCAACCTGC GAAAAACCGAGGAACCAAGTTGGCCTCAAAATCAAGAACTTCAAGAACAGGGTCTGAGGAAGAGTTTGAGTTGTTCAAGG ATTCTACTTGCATGAGTGTTTCTTCTTCTGTGGATACAACTGCAAGGAGTAATGGAACAAGACCCAAATGGATCAAAACA GAGCAACCTGCGAATGATTCAAGAACAGGGTCTGAGGAGTCGGAGAAGAAGATGGAGCTTTATAAAAAGATGCAGTTGTG GGTGATTTTGAAGCGGATGATGATTGGAAGAGATGGTTGGGCTTTCAAACACCCTCTTGATCCATTTGACTCTGAGAGTC TATTAATGGAGAAGAACAAGAAAAAGAAGCCAATATTGGGATTTGTGGACATTGAATCCAAATTGAAGAACTGGTTGTAC TCAGAGCCTGAACAATTTGTTGATGATATGCGGAATGTGTTCTCTCATGCATTGATGTACCCTTCCAGGAGTGAAGTTCA CATAATTGGAAGGAGGCTTAGTGACAACTTTGAGCACAATTGGACAACTTTGAAGAAAAAGTGGGCCTCTGAGGACAGAA AACAAAAGAGATCGAAGAAGGTTTGATCCAGGGAACTGAATGCAAAAGCAATGTCTTGGACAACAATTGATGATGTTTTC ATTCTTGTCAATGTAATTAATACCATATGATTTGGTTAATTAGTTTCAATTTTCATGTTTTTCCTAGTGTTCTGGAACTT ATATGTAGCATTAATATTGATTATATATGCTCAATTTTGTCAGTGTAATTTTGTTTCTCAGATCTTATTCTCCATGATCA TTTGTTTCTCTGATTTTATTCTCAATGATCACTTCAAGAAAACAAACATTATTGC
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0456200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCATCAATGGCAATGTCAGCAGAGTCATCCCAACCCAGAAAATCACTCATCATTAAGCTTCATTATCCTCGTTCTCT ACAGCGTAGTCCTTCTTCTTTTTCTTTATCCTCTGATCAGGCTATGGATTCTCATGCCAAGAAGAGGAAACTACTGGATG ATGATTCTTCAAAGCAATCAAGTAAAATCTTCAAGACTCATTCAAGAAGAAACGTGTATGGAGATCAGTTGGAGATGAAG GATTCTCACCGCAAGAACGTTGTTTCCAATGATGATTTTTCTGCAGTGACTACTGCCACAAGGTGTACTGGAACAAGAAC TGAAAGAACAGAGCAACCTGCGAAAAACCGAGGAACCAAGTTGGCCTCAAAATCAAGAACTTCAAGAACAGGGTCTGAGG AAGAGTTTGAGTTGTTCAAGGATTCTACTTGCATGAGTGTTTCTTCTTCTGTGGATACAACTGCAAGGAGTAATGGAACA AGACCCAAATGGATCAAAACAGAGCAACCTGCGAATGATTCAAGAACAGGGTCTGAGGAGTCGGAGAAGAAGATGGAGCT TTATAAAAAGATGCAGTTGTGGGTGATTTTGAAGCGGATGATGATTGGAAGAGATGGTTGGGCTTTCAAACACCCTCTTG ATCCATTTGACTCTGAGAGTCTATTAATGGAGAAGAACAAGAAAAAGAAGCCAATATTGGGATTTGTGGACATTGAATCC AAATTGAAGAACTGGTTGTACTCAGAGCCTGAACAATTTGTTGATGATATGCGGAATGTGTTCTCTCATGCATTGATGTA CCCTTCCAGGAGTGAAGTTCACATAATTGGAAGGAGGCTTAGTGACAACTTTGAGCACAATTGGACAACTTTGAAGAAAA AGTGGGCCTCTGAGGACAGAAAACAAAAGAGATCGAAGAAGGTTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0456200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MASMAMSAESSQPRKSLIIKLHYPRSLQRSPSSFSLSSDQAMDSHAKKRKLLDDDSSKQSSKIFKTHSRRNVYGDQLEMK DSHRKNVVSNDDFSAVTTATRCTGTRTERTEQPAKNRGTKLASKSRTSRTGSEEEFELFKDSTCMSVSSSVDTTARSNGT RPKWIKTEQPANDSRTGSEESEKKMELYKKMQLWVILKRMMIGRDGWAFKHPLDPFDSESLLMEKNKKKKPILGFVDIES KLKNWLYSEPEQFVDDMRNVFSHALMYPSRSEVHIIGRRLSDNFEHNWTTLKKKWASEDRKQKRSKKV
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Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46136:SF7
9 307 299 9.9E-48 –
PANTHER
PTHR46136
9 307 299 9.9E-48 –
MobiDBLite
mobidb-lite
20 80 61 - –
MobiDBLite
mobidb-lite
26 41 16 - –
MobiDBLite
mobidb-lite
42 80 39 - –
MobiDBLite
mobidb-lite
102 135 34 - –
MobiDBLite
mobidb-lite
149 172 24 - –
MobiDBLite
mobidb-lite
149 182 34 - –
Gene3D
G3DSA:1.20.920.10
151 308 158 1.7E-15
IPR036427
SMART
SM00297
182 293 112 0.0023
IPR001487
SUPERFAMILY
SSF47370
184 298 115 3.14E-10
IPR036427

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0456200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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