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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001487
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 89 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.524s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0059669.1
n.a. PREDICTED: transcription factor GTE1-like [Cicer arietinum] gi|502086469|ref|XP_004488228.1| chr0 19780187 19787830 -
7 domain predictions
1 GO term
Lj0g3v0178029.1
n.a. Bromodomain-containing RNA-binding protein [Medicago truncatula] gi|357518619|ref|XP_003629598.1| chr0 86207817 86208215 +
6 domain predictions
1 GO term
Lj0g3v0196249.1
n.a. Global transcription factor group [Medicago truncatula] gi|357472985|ref|XP_003606777.1| chr0 95702645 95703645 -
2 domain predictions
1 GO term
Lj0g3v0224219.1
n.a. PREDICTED: transcription factor GTE1-like isoform X1 [Cicer arietinum] gi|502154173|ref|XP_004509610.1| chr0 115737561 115745447 -
7 domain predictions
1 GO term
Lj0g3v0246099.1
n.a. PREDICTED: bromodomain and WD repeat-containing protein 1-like [Cicer arietinum] gi|502155569|ref|XP_004510122.1| chr0 127454659 127456680 +
7 domain predictions
1 GO term
Lj0g3v0253079.1
n.a. Bromodomain-containing protein [Medicago truncatula] gi|357494567|ref|XP_003617572.1| chr0 131389125 131394499 +
7 domain predictions
1 GO term
Lj0g3v0253079.2
n.a. Bromodomain-containing protein [Medicago truncatula] gi|357494567|ref|XP_003617572.1| chr0 131389967 131394499 +
7 domain predictions
1 GO term
Lj0g3v0263869.1
n.a. Bromodomain adjacent to zinc finger domain protein 2B [Medicago truncatula] gi|357478061|ref|XP_003609316.1| chr0 136789566 136790673 +
4 domain predictions
1 GO term
Lj0g3v0309539.1
n.a. PREDICTED: transcription factor GTE4-like isoform X1 [Cicer arietinum] gi|502143906|ref|XP_004505511.1| chr0 161594799 161601052 +
7 domain predictions
1 GO term
Lj0g3v0344449.1
n.a. Bromodomain adjacent to zinc finger domain protein 2B [Medicago truncatula] gi|357478061|ref|XP_003609316.1| chr0 180741218 180742353 +
4 domain predictions
1 GO term
Lj1g3v0271590.1
n.a. PREDICTED: transcription factor GTE10-like [Glycine max] gi|356508786|ref|XP_003523135.1| chr1 3322601 3328095 -
7 domain predictions
1 GO term
Lj1g3v0271590.2
n.a. PREDICTED: transcription factor GTE10-like [Glycine max] gi|356508786|ref|XP_003523135.1| chr1 3322601 3328095 -
7 domain predictions
1 GO term
Lj1g3v2682530.1
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31209960 31217614 +
4 domain predictions
1 GO term
Lj1g3v2682530.2
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356568407|ref|XP_003552402.1| chr1 31212558 31217614 +
4 domain predictions
1 GO term
Lj1g3v3384650.1
n.a. bromodomain-containing protein [Ricinus communis] gi|255539242|ref|XP_002510686.1| chr1 38928232 38932260 -
7 domain predictions
1 GO term
Lj1g3v3768350.2
n.a. PREDICTED: transcription factor GTE8-like [Glycine max] gi|356560519|ref|XP_003548539.1| chr1 43330644 43338569 -
7 domain predictions
1 GO term
Lj1g3v3768350.3
n.a. PREDICTED: transcription factor GTE8-like [Glycine max] gi|356560519|ref|XP_003548539.1| chr1 43336589 43338569 -
7 domain predictions
1 GO term
Lj1g3v4450300.1
n.a. PREDICTED: histone acetyltransferase GCN5-like [Cicer arietinum] gi|502109822|ref|XP_004493735.1| chr1 52153115 52160779 +
7 domain predictions
1 GO term
Lj2g3v1014400.1
n.a. PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cicer arietinum] gi|502090713|ref|XP_004489317.1| chr2 15598802 15614731 -
5 domain predictions
1 GO term
Lj2g3v1549760.1
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
7 domain predictions
1 GO term
Lj2g3v1549760.2
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like [Glycine max] gi|356529777|ref|XP_003533464.1| chr2 24400353 24418825 +
7 domain predictions
1 GO term
Lj2g3v1549760.3
n.a. PREDICTED: transcription initiation factor TFIID subunit 1-A-like isoform X3 [Cicer arietinum] gi|502162054|ref|XP_004512374.1| chr2 24411638 24418825 +
7 domain predictions
1 GO term
Lj3g3v0730070.1
n.a. Global transcription factor group [Medicago truncatula] gi|357472985|ref|XP_003606777.1| chr3 8162280 8163650 +
6 domain predictions
1 GO term
Lj3g3v0916990.1
n.a. Bromodomain protein [Medicago truncatula] gi|357451009|ref|XP_003595781.1| chr3 10850397 10856515 -
6 domain predictions
1 GO term
Lj3g3v2341100.1
n.a. PREDICTED: ATP-dependent helicase BRM-like [Glycine max] gi|356560792|ref|XP_003548671.1| chr3 29460340 29466945 +
4 domain predictions
1 GO term
Lj3g3v2848820.1
n.a. PREDICTED: transcription factor GTE4-like [Glycine max] gi|356546972|ref|XP_003541893.1| chr3 35055318 35059462 +
7 domain predictions
1 GO term
Lj3g3v3312800.1
n.a. PREDICTED: ATPase family AAA domain-containing protein At1g05910-like [Cicer arietinum] gi|502148941|ref|XP_004507330.1| chr3 40362934 40366261 -
7 domain predictions
1 GO term
Lj4g3v0409420.1
n.a. PREDICTED: transcription factor GTE7-like isoform X1 [Cicer arietinum] gi|502142265|ref|XP_004504873.1| chr4 5179078 5181977 -
7 domain predictions
1 GO term
Lj4g3v0409420.2
n.a. PREDICTED: transcription factor GTE7-like isoform X1 [Cicer arietinum] gi|502142265|ref|XP_004504873.1| chr4 5179078 5181977 -
7 domain predictions
1 GO term
Lj4g3v1388950.1
n.a. PREDICTED: transcription factor GTE8-like [Glycine max] gi|356513665|ref|XP_003525531.1| chr4 21486628 21494059 +
7 domain predictions
1 GO term
Lj4g3v2628810.1
n.a. PREDICTED: transcription factor GTE8-like [Glycine max] gi|356549150|ref|XP_003542960.1| chr4 35808741 35812194 +
7 domain predictions
1 GO term
Lj6g3v0857780.1
n.a. Bromodomain-containing protein [Medicago truncatula] gi|357459703|ref|XP_003600132.1| chr6 8570037 8576346 +
7 domain predictions
1 GO term
Lj6g3v1559380.1
n.a. PREDICTED: PH-interacting protein-like isoform X2 [Cicer arietinum] gi|502084839|ref|XP_004487773.1| chr6 17801938 17818769 -
4 domain predictions
1 GO term
Lj6g3v1966360.1
n.a. PREDICTED: transcription factor GTE10-like isoform X1 [Cicer arietinum] gi|502078499|ref|XP_004485965.1| chr6 22512707 22516868 -
7 domain predictions
1 GO term
Lj6g3v1966360.2
n.a. Bromodomain-containing factor [Medicago truncatula] gi|357447117|ref|XP_003593834.1| chr6 22513955 22516868 -
7 domain predictions
1 GO term
Lj6g3v2078010.1
n.a. Bromodomain protein [Medicago truncatula] gi|357446403|ref|XP_003593479.1| chr6 24402325 24406558 +
6 domain predictions
1 GO term
Lj6g3v2078020.1
n.a. n.a. chr6 24404045 24406800 -
6 domain predictions
1 GO term
Lj6g3v2192090.1
n.a. PREDICTED: transcription factor GTE11-like [Glycine max] gi|356554838|ref|XP_003545749.1| chr6 25203817 25206365 +
7 domain predictions
1 GO term
Lj6g3v2275090.2
n.a. Bromodomain-containing protein [Medicago truncatula] gi|357445295|ref|XP_003592925.1| chr6 26733126 26737971 -
7 domain predictions
1 GO term
LotjaGi1g1v0027400.1
n.a. Bromodomain-containing protein, putative; TAIR: AT5G55040.1 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|Q9ULD4|BRPF3_HUMAN Bromodomain and PHD finger-containing protein 3; TrEMBL-Plants: tr|A0A0L9UUY7|A0A0L9UUY7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0027400 LjG1.1_chr1 3321857 3327987 +
5 domain predictions
1 GO term
LotjaGi1g1v0235400.1
n.a. Transcription factor GTE10; TAIR: AT5G63320.1 nuclear protein X1; Swiss-Prot: sp|Q9FGW9|GTE10_ARATH Transcription factor GTE10; TrEMBL-Plants: tr|V7AWA8|V7AWA8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0235400 LjG1.1_chr1 55630124 55640810 +
5 domain predictions
1 GO term
LotjaGi1g1v0478100.1
n.a. ATP-dependent helicase BRM; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr|I1N3S1|I1N3S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478100 LjG1.1_chr1 98986383 98999939 +
2 domain predictions
1 GO term
LotjaGi1g1v0478100.2
n.a. ATP-dependent helicase family protein; TAIR: AT2G46020.2 transcription regulatory protein SNF2; Swiss-Prot: sp|Q6EVK6|BRM_ARATH ATP-dependent helicase BRM; TrEMBL-Plants: tr|I1N3S1|I1N3S1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0478100 LjG1.1_chr1 98986976 98999231 +
2 domain predictions
1 GO term
LotjaGi1g1v0566700.1
n.a. Bromodomain-containing protein; TAIR: AT1G20670.1 DNA-binding bromodomain-containing protein; Swiss-Prot: sp|O95696|BRD1_HUMAN Bromodomain-containing protein 1; TrEMBL-Plants: tr|K7KHM0|K7KHM0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0566700 LjG1.1_chr1 109982899 109989187 -
5 domain predictions
1 GO term
LotjaGi1g1v0619600.1
n.a. Transcription factor GTE8; TAIR: AT3G27260.4 global transcription factor group E8; Swiss-Prot: sp|Q9LK27|GTE8_ARATH Transcription factor GTE8; TrEMBL-Plants: tr|A0A0S3RVN8|A0A0S3RVN8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0619600 LjG1.1_chr1 116653053 116659816 -
5 domain predictions
1 GO term
LotjaGi1g1v0619700.1
n.a. Transcription factor GTE8; TAIR: AT3G27260.4 global transcription factor group E8; Swiss-Prot: sp|Q9LK27|GTE8_ARATH Transcription factor GTE8; TrEMBL-Plants: tr|I1MLM9|I1MLM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0619700 LjG1.1_chr1 116661317 116669820 -
5 domain predictions
1 GO term
LotjaGi1g1v0714400.2
n.a. Histone acetyltransferase GCN5; TAIR: AT3G54610.1 histone acetyltransferase of the GNAT family 1; Swiss-Prot: sp|Q9AR19|GCN5_ARATH Histone acetyltransferase GCN5; TrEMBL-Plants: tr|I1JNY5|I1JNY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0714400 LjG1.1_chr1 128249547 128257382 -
5 domain predictions
1 GO term
LotjaGi1g1v0714400.3
n.a. Histone acetyltransferase GCN5; TAIR: AT3G54610.1 histone acetyltransferase of the GNAT family 1; Swiss-Prot: sp|Q9AR19|GCN5_ARATH Histone acetyltransferase GCN5; TrEMBL-Plants: tr|I1JNY5|I1JNY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0714400 LjG1.1_chr1 128249866 128257313 -
5 domain predictions
1 GO term
LotjaGi2g1v0101800.1
n.a. Transcription factor GTE1; TAIR: AT2G34900.1 Transcription factor GTE6; Swiss-Prot: sp|Q84XV2|GTE1_ARATH Transcription factor GTE1; TrEMBL-Plants: tr|V7C0T4|V7C0T4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0101800 LjG1.1_chr2 33858008 33872668 +
5 domain predictions
1 GO term
LotjaGi2g1v0248100.1
n.a. Methyl-CpG-binding domain-containing protein 9; TAIR: AT3G01460.1 methyl-CPG-binding domain 9; Swiss-Prot: sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9; TrEMBL-Plants: tr|I1M022|I1M022_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0248100 LjG1.1_chr2 71364106 71383994 -
3 domain predictions
1 GO term