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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0456400 |
| Transcript ID | LotjaGi3g1v0456400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heat shock 70 kDa protein; TAIR: AT3G12580.1 heat shock protein 70; Swiss-Prot: sp|Q9LHA8|MD37C_ARATH Probable mediator of RNA polymerase II transcription subunit 37c; TrEMBL-Plants: tr|A0A151S7N6|A0A151S7N6_CAJCA Heat shock cognate 70 kDa protein 2; Found in the gene: LotjaGi3g1v0456400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:86983962..86987422) extracted from Lotus japonicus Gifu genome v1.2.
GTCACATGATTTTCATCTTATCAATAAAAAGAAGTTGATAAAAAAGAGTGTTAAAGTGAGCGTGGAGTAGCAATTTTTCT TTAAGCTAATTGGCAGCGCGCTGTTTCTGCAGGCAATTCAAATCGCAGCTTTCATTTTGCTCCGTGCAACTCAAGCATGT AAGGGTTTTGATGTTTTTCACTATGCCACAGTTCCTTCTTCCTAACCCTAACTTTAGCTTCTTCTCCCTGTTCTTGTTTG CAGTTGATGGCTGGAAAATATGAAGGAATTGCAGTGGGAATCGACCTGGGCACCACCTATTCATGCGTTGGAGTGTGGCA GGAAACTCACAGCAGAGTAGAGATTATCCACAACGACCAAGGCAACAAGACAACACCATCTTTTGTTGCTTTCACTCAAA ACCAACGCTTGATTGGTGATGCTGCTAACAATCAAGCTTCTGCTAACCCTGAAAACACTGTCTTTGGTGAAGTTTCTACT TTATTTTCTGCTTATTTGCTTAAAGTTTCTATTTTTATTTGACTATAGTGCATGAATGATAATACATTGTTGTACTATAT TTCTTCAGATGCAAAGGGATTAATTGGTAGGAAATTTAGTGACCCTGTGGTTCAAAAAGATTTAATTTTGTGGCCATTCA AGGTCATTGCTGGTGTTAATGACAAGCCTATGATCCTTGTTAAGTACCAAGGTCAGGAGAATCGCCTTTCAGCTGAGGAA ATCTCGTCGATGGTCCTCACCAAGATGCGCGAGAGTGCGGAGGCGTATTTGGAATCGCCGGTGAAGAATGCTGTCATTAC TGTGCCTGCTTACTTCAGTGATTCGCAGCGAAAAGCCACGATAGATGCTGGTACCATTGCTGGCCTGAATGTTATGCGGG CAATCAATGAACCTACTGCTGCAGCTCTTGCGTATGGTCTTGACAAGAGAAGTAACTGTGGTGTTGAAGAGCGGAATATT TTTGTGTTTGATCTTGGTGGAGGTACTTTTGATGTGTCTATCCTTACAATTAAGGATAACGTTTTCAAAGTTAGGGCCAC GGCATGAAACACTCACCTCGGGGGAGCCGACTTTGATAACAGAATGGTGAACTATTTTGTAAAGGAGTTCAAGAACAAGA ACAAAGTGGGACATAACTGGAAATCCAAGAGCTTTGAGAAGGTTGAGAGCCGCATTTGAGAGGGCGAAAAGGACACTTAG TTTTGCTGTTGATACCACCGTTGAGATAGATGCTCTAATCCAAGGCATTGATTTCTGTTTTTCAATCTCTCGTGGAAGGT TTGAGAAAATGAATATGGAACTTTTTGAAGAGTGTATGGAGACTGTAGATAAGTGTCTTAATGATGCTCAGATGGCCAAG AGTAGTATACATGATGTTGTCCTTGTTGGTGGCTGTTCTAGGATTCCAAAAGTGCAGCAACTATTGCAGGATTTTTTCAA TGGGAAGGATCTGTGCAAGAGCATTAATCCGGATGAGGCTGTTGCTTGTGGTGCAGCTGTCCAGGCTGCTCTGTTGACTG AAGGCATTAAAAATGTTCCAAAATTGAAGCTGTTGGATGTTACACCGCTATCTCTTGGTATAGCGGTAGGTATAAATTTA ATGAGTGTGGTAATTCCTAGGAACACTACCATTCCTGTCAAGAGGCAAAAAATATTCACTACACCTAAAGATAACGTAGA TACTGTCTCAATTAATGTTTATGAGGGCGAGAGAGCAAGAGCGAGTGATAACAATAAGCTTGGTATTTTTTGGCTTTCTG GTTTTCCTCCAGCTCCTCGTGGCCATCCGCTAGATGTATGCTTTGCTATAGATGAAAATGGCATTCTAACTGTTTCTGCT GAGGAAAAAGTCACTGGTAATAAGAATGAGATTACCATTACCAATGACAAAGAAAGAATGTCACTTGAAGAAATTGAAAG ATTGATTAAAGAAGCTGAGATATACCAGGCTGAAGATAACAAGTACCTTGTTAAGTTCAATGCAATGAAAGCTTTGGATG ACTATGTTTATGATATGAGGCATACTTTGAAGAACTAGAATATCTATGCAAAGCTCTCATCAGAAGAGAAGGAGAAGATC AATTCTGCAATTGCGAAAGCCAGAAATTTGCTTGATGATGATTATCAGCAAGATGAAGATGTGTTTGTGGATTGTTTGGA GGATCTTGAGAGCATCTTTGAACCCATTATAGCCATGGATGGCTAGTTCTTATCAGTCCTAAGTTTTTATTGTGTTGAAT TGTCATTTTGTTTGGGCTAAATAAAAACCTTTATGATCATATTAACTATAAATATTTTAGTTGAACTATTTTGTGTTGGA CATGTTTTAATTTTTACTGTGCTTGACTTAGACAGTTGCTAGGATTTCTGGAATTTATCCCTGAACTCAAAATCTATCAC TTGCTAAATAGTATACTAGTGATCTATCAGTTCATGAATTTATCTGGGTTTGGGTGTTGGATGATTGAGTACATATCTTT GACTTTTTTTAAAGAAATAAGATGTTATTCACTACAATAACATTCACATTAGGAGGATACTGTTAACTGGATGTGATCAA TCTTTGCCAAAATTTAGAAGATAGCCAATCTTGTTGGTAAGCGGAATGTTTTCATCTTTGATCTTGGTGGAGGCACTTTT GGTGTGTCACTTCTCACAATGAAGGGTGACAGCATTGAAGTGAAGATTTGTTCCTAATTGTATCAATTAAATAAATTACG ACTTTGTGTCTTGTGTGTTTGATCTGTTTCTAATGTTTCACTCAGTTGCTTACTGAGGTTAGGTTCGATATTTTTTAGTT TATTTTTGTGGTACGAATCTTCAATCTGGAAAAATTCAGCGATGGATTTTCTCCATGCTTAGTTGTTCAACCTATTTGTG CGCGAGTTGTTGTTGCACATACAGTTTTTCAACTCCTGTATACGAATTTTAAAAGATTGTTCTTTTGCATATTAGATGTT TAAAAAATGGCCAAGGTAGGGAGAGATCTTAGCATGAAATAGCAGAGTCACATACTTGGAAATTAGAGGCATCTCACTGG TTTATTTTGTGGTCAATGTGCTTCTACTAATTGTAGGTGAGCCGGTGAGGGCAAGGCTGTGGAAAAAGAGCTTAAAACTA CGACAACAACAAATGCTGTAAACCAAGACAACACAAATATTCTGTTCTCGGTATGATTGTTCCATCCTTTGTTCAACCTC ATGGCTGATTAGCTTTAAGGACTGTTTTTAAGACTATATAATGGTTTGAATATTTTCAATCCAATTTGTGTATGAGGGGA TACTGTCTCATTCCCTCTTTGTGTATATATAAAAATTGTTGAGATCATTGAAGCTACTGCATTACCCTGAAGTCCTGAAT TCGAAGATAAGAACAGAAAGTAATGAACGTAGTTCATTTAACATTGTAACTTAAATAGTCTCATTCTCTTGTATTCTCCT TAAATCATTCTTGTCAATGTC
CDS sequence (LotjaGi3g1v0456400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATATGGAACTTTTTGAAGAGTGTATGGAGACTGTAGATAAGTGTCTTAATGATGCTCAGATGGCCAAGAGTAGTAT ACATGATGTTGTCCTTGTTGGTGGCTGTTCTAGGATTCCAAAAGTGCAGCAACTATTGCAGGATTTTTTCAATGGGAAGG ATCTGTGCAAGAGCATTAATCCGGATGAGGCTGTTGCTTGTGGTGCAGCTGTCCAGGCTGCTCTGTTGACTGAAGGCATT AAAAATGTTCCAAAATTGAAGCTGTTGGATGTTACACCGCTATCTCTTGGTATAGCGGTAGGTATAAATTTAATGAGTGT GGTAATTCCTAGGAACACTACCATTCCTGTCAAGAGGCAAAAAATATTCACTACACCTAAAGATAACGTAGATACTGTCT CAATTAATGTTTATGAGGGCGAGAGAGCAAGAGCGAGTGATAACAATAAGCTTGGTATTTTTTGGCTTTCTGGTTTTCCT CCAGCTCCTCGTGGCCATCCGCTAGATGTATGCTTTGCTATAGATGAAAATGGCATTCTAACTGTTTCTGCTGAGGAAAA AGTCACTGGTAATAAGAATGAGATTACCATTACCAATGACAAAGAAAGAATGTCACTTGAAGAAATTGAAAGATTGATTA AAGAAGCTGAGATATACCAGGCTGAAGATAACAAGTACCTTGTTAAGTTCAATGCAATGAAAGCTTTGGATGACTATGTT TATGATATGAGGCATACTTTGAAGAACTAG
Protein sequence (LotjaGi3g1v0456400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNMELFEECMETVDKCLNDAQMAKSSIHDVVLVGGCSRIPKVQQLLQDFFNGKDLCKSINPDEAVACGAAVQAALLTEGI KNVPKLKLLDVTPLSLGIAVGINLMSVVIPRNTTIPVKRQKIFTTPKDNVDTVSINVYEGERARASDNNKLGIFWLSGFP PAPRGHPLDVCFAIDENGILTVSAEEKVTGNKNEITITNDKERMSLEEIERLIKEAEIYQAEDNKYLVKFNAMKALDDYV YDMRHTLKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 248 | 248 | 5.8E-109 | – | |
| Pfam | 1 | 248 | 248 | 1.7E-77 | ||
| PANTHER | 1 | 248 | 248 | 5.8E-109 | ||
| SUPERFAMILY | 3 | 76 | 74 | 8.19E-21 | ||
| Gene3D | 3 | 61 | 59 | 4.2E-27 | – | |
| PRINTS | 27 | 43 | 17 | 2.4E-26 | – | |
| ProSitePatterns | 30 | 44 | 15 | - | ||
| PRINTS | 59 | 79 | 21 | 2.4E-26 | – | |
| Gene3D | 62 | 74 | 13 | 4.2E-27 | – | |
| Gene3D | 76 | 249 | 174 | 1.5E-61 | ||
| SUPERFAMILY | 82 | 232 | 151 | 1.7E-45 | ||
| PRINTS | 85 | 104 | 20 | 2.4E-26 | – | |
| PRINTS | 165 | 181 | 17 | 2.4E-26 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0456400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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