Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0458200 |
| Transcript ID | LotjaGi3g1v0458200.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein phosphatase-2c, putative; TAIR: AT4G03415.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q8GY60|P2C52_ARATH Probable protein phosphatase 2C 52; TrEMBL-Plants: tr|A0A0S3SBJ6|A0A0S3SBJ6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0458200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87245420..87248465) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTTGTTGTGTCTCAACAAGAAGTAAAAGCACTTGTAGCAGCAGGAGCAATGGAGAGAGGGTCTCTCCATCTTGCTT GGAAGTTGGATTCTGTGGGCAAAAGAGAGCAACAAGGAGAACATTTTCTGATCATGTTATTTCTCTACACCATTTACCCT CCTTACCCAGCAGAATTTTCGCTAATGGAAAGAGCCGCGGGTCCTGCATATTCACGCAGCAAGGCCGCAAGGGTATTAAT CAGGACGCCATGATTGTGTGGGAAGTAAGTATGTTCATCTTATTACGGGTGATGCATGAGCATTGCTCATGAGTGATTGA AGGAGTGACTAACATACTAATTTGAATCTGTGCTTTGCAGGATTTCATGTCTGAAGATATGACCTTTTGTGGTGTCTTTG ATGGCCATGGTCCACATGGTCATCTTGTTGCACGCAAAGTGAGGGATACCTTGCCATTGAAACTGCTTTCATTTTTGCAT TCTGGTGAATCAAAGAGAAATGGGTCGGGTAAAGGTTGCTTCAAAGGGAACATAAAACCTGACAGTGGAGAGTCTGAGAA TGATTGTTCTGCCGAGGATAAACTGAACTCGACATGGAGAGAAGCTTTAATGAAGGCATACAAGGCTATGGACAAAGAAC TCAGGTCTCATCCAAATCTAGACTGCTTCTGTAGTGGGAGCACAGCCGTGACTATAATAAAGCAGGTAGCAGATCTGAAC TCTTGTTTTCCATAACTTTACTGTGTTTGGATGTACAATTCAAAATTTCAAGAAAATAATAACTTGGTTTATTTTGATTA TTGTCATTTTTTGAGTCTTTTGTCAGGAATTAAGAAATTTGGTGGAGAATATTTGATAGGTTGAGGGTGAGGGGTAAAGG AGGAGAGTTTGAGGGAAGGGATTTTCAAAAATTCCTTCTAAAAAGGATGGAATTTTAAATCTTTTATTTTGAGTTAGGAA ATTACCCTATAAAATTACCTTAATTTTCAAGATACTCTGATTTGATATCCTGTATTTTGGATTAAGCAATGTAAAATCCC CTCAACAAATTTATTCTCTCAATTAAATCCCCATCCAAACACATTGAGTTTTTATAATTTCTTATCTCAACAGGGTTCAA ATCTGTTCATGGCCAGTATCGGGGATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACTCCATGGTGGCAGTTCAG TTGACTGTTGATTTGAAGCCTGATTTGCCAAGTATGTCTTATGCCATCGTCATTTATTCTCTGTTGAATATATGCTTTTC TGTTGATATTGACACCAACTTGGATGGAAACTCTTATAGGGGAAGCAGAAAGAATTAAGCGATGCAAAGGTAGGGTATTT GCTTTACAAGATGAGCCAGAAGTGCCGAGGGTGTGGTTGCCTTTTGATGATGCACCAGGGTTAGCAATGGCTAGAGCATT TGGAGATTTCTGCTTGAAGGAGTATGGTGTGATTTCCATACCAGAATTTTCTCACCGGCAACTTACAGACAGAGATCAAT TCATTGTAATTGCCTCAGATGGGGTAAGATTAAGAATTTTCAATGTCATATCAATTTCTTTAGTACTTTGTTTAATTATG CTTTGCCATTTCAGAAATTGTGTTATGATTTTTATCCCTGTCCGACTAGGAAATTTTAGCATACATGATCTGCAATTTCA AGGTTGGTTTCTGTTGGTTAATATGGCTTTGTTGCTGCCTTGAAGAAATCATCTTACAAGGTCGAGCTGTGATATTGAAA TAAGAAAATGTGGTCAGTGTAGGCAAATATCTAGGCTAGCATAGCATGAACCATATGGTCATAAGGAAACTGAGAAGTGT CTTTTCGAAACTAACCATTGAGTGGAAATAGAGTGTTTAGCAATTTGACTGAACCAGTAACTTCTCGGGCTGTTTGTCAA TCTGCACCATTACAGTTAAATTAGCTGGCATTCTGACAACTCAGACGGCGGTATTTCTTAAGCAATAAGCTCTCTTCAAT ATGAAGAAATATATAAATTCTGTTCATAATGCAAGCTTTCTCATTCTGGCCTGTTATTGAATTATTCTTATCTTTTTTTC TTTTGGGGTACAAGAGTGAAGTGCTGATATCTGATTTTTCATGAGTTGAACGGAAGATAAACAAAGAGCCTCTCTTTGGG TTGCCAAATAGAGTTATCTTCTTTTCATTCGTGGGATAAGTTTGTTTTAGCATGAACATTATATGACCTACATTTTTTGC AACACCTTTCATGTAGAGCTGTAAATTAACTTGGCTTATATACAATCTACGCAGAAAATATTTTCTACGTGAAAGGTGTT GCAAAAAATGTTGGTCATATACCAATTCGTTCATTTGAAAGGCACAAGAGCTGTAAAGTAACTTTGTTTATATACAATCT ACGTAGAAAAACATTTCCGCTACATAATAATGCTATTCATTGAAATATCTAATATGGAAAAGAAAATAGTAAGTTCTTTG AATGTGCAAGTATAAGGGAAGTGGACGTAACTTAGAGGATATCGACTTTTGAGTTTCCATCTTCCACTGAATGATATTGA TTCTCTTAATGCTTTGTTCAGGTCTGGGATGTTTTAAGCAATGAGGAGGTGGTTGAGATTGTATCTTCATCCCCAACGCG AGCATCAGCAGCTAGAACAGTGGTAAATTCCGCTGCTCGGGAGTGGAAACTTAAATATCCAACTTCAAGGATGGATGACT GTGCTGTTGTGTGCTTATTTCTGGATGGGAAAATGGACTCAGAATCAGATTATGATGAACAAGGCTTTTCTTCTGCAACC ATCCAGAGCAACCATTCAGGCAACCCAATTGAGTCAGATGATGGACAAAAATCAGAGCCATGTTTGCAGAGGAACTTCAC AGTGAGATCCTCGGAAGAAGATGAGACTAATGGAGCAGTACCTGTCGATGTTGAAGATGCAACATCATACGCTGATGATC AAAACTGGTCAGGTTTGGAGGGGGTAACTCGGGTAAACTCGCTTGTTCAACTTCCTAGATTTTCTGAGGAAAGGCCAAAT TCATGA
CDS sequence (LotjaGi3g1v0458200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTTGTTGTGTCTCAACAAGAAGTAAAAGCACTTGTAGCAGCAGGAGCAATGGAGAGAGGGTCTCTCCATCTTGCTT GGAAGTTGGATTCTGTGGGCAAAAGAGAGCAACAAGGAGAACATTTTCTGATCATGTTATTTCTCTACACCATTTACCCT CCTTACCCAGCAGAATTTTCGCTAATGGAAAGAGCCGCGGGTCCTGCATATTCACGCAGCAAGGCCGCAAGGGTATTAAT CAGGACGCCATGATTGTGTGGGAAGATTTCATGTCTGAAGATATGACCTTTTGTGGTGTCTTTGATGGCCATGGTCCACA TGGTCATCTTGTTGCACGCAAAGTGAGGGATACCTTGCCATTGAAACTGCTTTCATTTTTGCATTCTGGTGAATCAAAGA GAAATGGGTCGGGTAAAGGTTGCTTCAAAGGGAACATAAAACCTGACAGTGGAGAGTCTGAGAATGATTGTTCTGCCGAG GATAAACTGAACTCGACATGGAGAGAAGCTTTAATGAAGGCATACAAGGCTATGGACAAAGAACTCAGGTCTCATCCAAA TCTAGACTGCTTCTGTAGTGGGAGCACAGCCGTGACTATAATAAAGCAGGGTTCAAATCTGTTCATGGCCAGTATCGGGG ATTCTCGAGCAATCATGGGATCCAAGGACAGCAATGACTCCATGGTGGCAGTTCAGTTGACTGTTGATTTGAAGCCTGAT TTGCCAAGGGAAGCAGAAAGAATTAAGCGATGCAAAGGTAGGGTATTTGCTTTACAAGATGAGCCAGAAGTGCCGAGGGT GTGGTTGCCTTTTGATGATGCACCAGGGTTAGCAATGGCTAGAGCATTTGGAGATTTCTGCTTGAAGGAGTATGGTGTGA TTTCCATACCAGAATTTTCTCACCGGCAACTTACAGACAGAGATCAATTCATTGTAATTGCCTCAGATGGGGTCTGGGAT GTTTTAAGCAATGAGGAGGTGGTTGAGATTGTATCTTCATCCCCAACGCGAGCATCAGCAGCTAGAACAGTGGTAAATTC CGCTGCTCGGGAGTGGAAACTTAAATATCCAACTTCAAGGATGGATGACTGTGCTGTTGTGTGCTTATTTCTGGATGGGA AAATGGACTCAGAATCAGATTATGATGAACAAGGCTTTTCTTCTGCAACCATCCAGAGCAACCATTCAGGCAACCCAATT GAGTCAGATGATGGACAAAAATCAGAGCCATGTTTGCAGAGGAACTTCACAGTGAGATCCTCGGAAGAAGATGAGACTAA TGGAGCAGTACCTGTCGATGTTGAAGATGCAACATCATACGCTGATGATCAAAACTGGTCAGGTTTGGAGGGGGTAACTC GGGTAAACTCGCTTGTTCAACTTCCTAGATTTTCTGAGGAAAGGCCAAATTCATGA
Protein sequence (LotjaGi3g1v0458200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGCCVSTRSKSTCSSRSNGERVSPSCLEVGFCGQKRATRRTFSDHVISLHHLPSLPSRIFANGKSRGSCIFTQQGRKGIN QDAMIVWEDFMSEDMTFCGVFDGHGPHGHLVARKVRDTLPLKLLSFLHSGESKRNGSGKGCFKGNIKPDSGESENDCSAE DKLNSTWREALMKAYKAMDKELRSHPNLDCFCSGSTAVTIIKQGSNLFMASIGDSRAIMGSKDSNDSMVAVQLTVDLKPD LPREAERIKRCKGRVFALQDEPEVPRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDRDQFIVIASDGVWD VLSNEEVVEIVSSSPTRASAARTVVNSAAREWKLKYPTSRMDDCAVVCLFLDGKMDSESDYDEQGFSSATIQSNHSGNPI ESDDGQKSEPCLQRNFTVRSSEEDETNGAVPVDVEDATSYADDQNWSGLEGVTRVNSLVQLPRFSEERPNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 22 | 22 | - | – | |
| PANTHER | 9 | 421 | 413 | 3.6E-196 | – | |
| PANTHER | 9 | 421 | 413 | 3.6E-196 | ||
| SMART | 51 | 369 | 319 | 7.1E-73 | ||
| SUPERFAMILY | 62 | 373 | 312 | 3.4E-58 | ||
| Gene3D | 63 | 379 | 317 | 1.8E-78 | ||
| CDD | 66 | 371 | 306 | 6.87592E-72 | ||
| ProSiteProfiles | 67 | 371 | 305 | 45.669 | ||
| MobiDBLite | 131 | 158 | 28 | - | – | |
| Pfam | 156 | 345 | 190 | 1.5E-39 | ||
| MobiDBLite | 381 | 409 | 29 | - | – | |
| MobiDBLite | 382 | 409 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. |
Expression pattern of LotjaGi3g1v0458200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…