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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0460200 |
| Transcript ID | LotjaGi3g1v0460200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin family protein; TAIR: AT4G03270.1 Cyclin D6;1; Swiss-Prot: sp|Q9ZR04|CCD61_ARATH Putative cyclin-D6-1; TrEMBL-Plants: tr|K7KY76|K7KY76_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0460200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87480464..87482627) extracted from Lotus japonicus Gifu genome v1.2.
GAGTGGCAACTAGCAGGCACTCAAGCAACAACAAAAGAAAACTATCAAAGTTGTTGAAGAACTGAAGGGACTGCACATTG TTCATTAGAAGAAAGTTGAAAACTCCCTCTGCAGCTTTACCTATCACTTTGCCTCTTCTCATCAATGCCTGTCCTTGTCT TTTATCACAGATGAGTGACTCATCCACATACAAATCATCCATGGAGTTTGACCTTGAAAACCCTTTAGAAAACCTCCAAG ACCTCCACTCTGATGCTCTCTCCTCCCTCTTCCTTATTGAATCTGACCACATCCCACAACAAAGCTTCTTTCAGATTCTC AAAGCAAGAGATCTTGACATATCTTCTAGAACAGAAGCCATCTCTTTAATCTCACAGGTAAGTGTCAATCCCAATTCAGG TCCTTCTCTGAGAAATAGTACATTGATTATTATTTGAAAAAAGAACAAAAAATTAAATGTCTTCACATAATCTTAATGTG GGTTATTTTTTTCTTTTTTCAGTTATCCTGCACTTGGGATCCAATTTTGTCTTACCTTGCCATCAATTATTTCGACCGGT TCCTGGTCAATCAAGGGATATTGGTAAAGAAAGCAATTGCACTATTTGTTTCTAGATCATTTATTTCTTTTGTTCATTGT TCTTCTCAATCAAAATAATTGCATAGGCCTTCTTTGTAATTTATAAATGTATCAACTCATGTTCTTATTTGTCATTATGA ACAAATGTAGAATAGTATAAGGTGGACTCTACTCTAATAAGATCTTACTCATGTTTTGTATGTAACAGCAACCAAAGCAA TGGGTCCTCAGGCTTATTTCAATCTCATGCTTTTCTTTAGCTGCCAAGATGATGAAAACAGAGTACTCTGCTTCTGATTC CCAGGTAAAAACTCTAGTCACCACCATAAATATCATGTGTTAGAAAAATGCTTAGGCTTTATAATCATTCATTGAAGCTC ATGTTAACAGGCCCTTATGTCACAATGTGATGGTGGCATGATATTTGAGAAGCAAGCAATACAGAAAATGGAAGCACTCG TTTTGGGAGCTCTAAAATGGAGAATGCGCTCGATCACCCCCTTCTCTTTTCTGGCTTTCTTCATTACACTGTTTAAGCTC AAAGACCCATCCATGGAAACTGTCCTGAAAAACCGAGCAGCTCAAATCATTTTCAAGTGCCAAAGAGGTTTTATATGATT AAACTACATAACGGGTTGATTAGATTAATAATAAAGATTCATTTTCAATGATCATTGTCCTTTTTCATTGCAGAAATAAG GTTCTGGGAATTCAAGCCATCTAATGTTGCTGCATCAGCACTTCTAAGCGCTTCTCATGAGTTGTTTCCTCTTCAATATC CATGCTTCTTAGCAGCATTATCTGAATGTTCATACGTGAATAAAGTACAAGTTCTTCCTTTAAACTTAGTGCTTGCTTAA AAACTCTTTGAAAATTGCACTTGAAAAGCCAAAATTACGGTGAATATAAGCAACATTCTTTAGTTTTTGCCACTTCTCAC CATCATTTTGACTTTATTGTGATTTTTGAACGAGTTTACAAACAATAATTGGTTTGTGTTAGTTGTTATGTTTTTTTATT AATGAATTGATTAATAAATGGTGCCGTAATTTTGCTGCAGGAAAGCGTGCTGCAGTGCTATAGTGTGATACAAGATATGG CTACAGGTGAGGAGAATGGGTATGTTTTCAATGCGGTTCCAAGTTCAGACACACCAGTTAATGTGTTGGACCATCATTTT CTGAGTTCAGAGAGTGAAAAAACCACCGAAATCTCCATTGCTGTTTTTCCTCAGAGAGGGAAAATCACTGCATCTAGTAA CGATTCAATGAGTCAGAACACTCAGATTAAACAATGCTGAAAGTAGGGATTATGTAATAGGATCTTGATCTAGTTAACAA GAAAAATTGAAAAATGGGACAAGGAAAGAAAATGATGGATATCTTTCTGGGACAAAATGGTTGTAATAGGATCTTGGCAC GACCCTCCCTCGTTACATTAAAGGGACTGACATGGGAAGATAAAATGCTTGGATTTATGTTTTCTTAAAGACCAAACAAA ATGACAAAAGATGACTTTGAATTATTAATTTCTTTTTGTTGAATTTCGTGTTTGTTTTTTTGTGGTTCATCAAGTGAGAT TGTG
CDS sequence (LotjaGi3g1v0460200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGTGACTCATCCACATACAAATCATCCATGGAGTTTGACCTTGAAAACCCTTTAGAAAACCTCCAAGACCTCCACTC TGATGCTCTCTCCTCCCTCTTCCTTATTGAATCTGACCACATCCCACAACAAAGCTTCTTTCAGATTCTCAAAGCAAGAG ATCTTGACATATCTTCTAGAACAGAAGCCATCTCTTTAATCTCACAGTTATCCTGCACTTGGGATCCAATTTTGTCTTAC CTTGCCATCAATTATTTCGACCGGTTCCTGGTCAATCAAGGGATATTGCAACCAAAGCAATGGGTCCTCAGGCTTATTTC AATCTCATGCTTTTCTTTAGCTGCCAAGATGATGAAAACAGAGTACTCTGCTTCTGATTCCCAGGCCCTTATGTCACAAT GTGATGGTGGCATGATATTTGAGAAGCAAGCAATACAGAAAATGGAAGCACTCGTTTTGGGAGCTCTAAAATGGAGAATG CGCTCGATCACCCCCTTCTCTTTTCTGGCTTTCTTCATTACACTGTTTAAGCTCAAAGACCCATCCATGGAAACTGTCCT GAAAAACCGAGCAGCTCAAATCATTTTCAAGTGCCAAAGAGAAATAAGGTTCTGGGAATTCAAGCCATCTAATGTTGCTG CATCAGCACTTCTAAGCGCTTCTCATGAGTTGTTTCCTCTTCAATATCCATGCTTCTTAGCAGCATTATCTGAATGTTCA TACGTGAATAAAGAAAGCGTGCTGCAGTGCTATAGTGTGATACAAGATATGGCTACAGGTGAGGAGAATGGGTATGTTTT CAATGCGGTTCCAAGTTCAGACACACCAGTTAATGTGTTGGACCATCATTTTCTGAGTTCAGAGAGTGAAAAAACCACCG AAATCTCCATTGCTGTTTTTCCTCAGAGAGGGAAAATCACTGCATCTAGTAACGATTCAATGAGTCAGAACACTCAGATT AAACAATGCTGA
Protein sequence (LotjaGi3g1v0460200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSDSSTYKSSMEFDLENPLENLQDLHSDALSSLFLIESDHIPQQSFFQILKARDLDISSRTEAISLISQLSCTWDPILSY LAINYFDRFLVNQGILQPKQWVLRLISISCFSLAAKMMKTEYSASDSQALMSQCDGGMIFEKQAIQKMEALVLGALKWRM RSITPFSFLAFFITLFKLKDPSMETVLKNRAAQIIFKCQREIRFWEFKPSNVAASALLSASHELFPLQYPCFLAALSECS YVNKESVLQCYSVIQDMATGEENGYVFNAVPSSDTPVNVLDHHFLSSESEKTTEISIAVFPQRGKITASSNDSMSQNTQI KQC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 100 | 100 | - | – | |
| PANTHER | 12 | 295 | 284 | 1.2E-108 | ||
| PANTHER | 12 | 295 | 284 | 1.2E-108 | ||
| SUPERFAMILY | 23 | 160 | 138 | 1.02E-19 | ||
| Gene3D | 30 | 252 | 223 | 1.1E-34 | – | |
| Pfam | 37 | 160 | 124 | 5.9E-14 | ||
| Gene3D | 43 | 161 | 119 | 1.1E-34 | – | |
| CDD | 59 | 153 | 95 | 3.56072E-7 | ||
| SMART | 61 | 154 | 94 | 0.006 | ||
| Phobius | 101 | 118 | 18 | - | – | |
| Phobius | 119 | 157 | 39 | - | – | |
| SUPERFAMILY | 144 | 259 | 116 | 1.77E-9 | ||
| Phobius | 158 | 178 | 21 | - | – | |
| Pfam | 163 | 261 | 99 | 2.9E-11 | ||
| SMART | 163 | 298 | 136 | 0.0099 | ||
| Phobius | 179 | 323 | 145 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. | ||
| Biological process | Regulation of cell cycle | Any process that modulates the rate or extent of progression through the cell cycle. |
Expression pattern of LotjaGi3g1v0460200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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