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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0461900 |
| Transcript ID | LotjaGi3g1v0461900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | LINE-1 reverse transcriptase like; TAIR: AT4G29090.1 Ribonuclease H-like superfamily protein; Swiss-Prot: sp|A2C5B5|TILS_PROM1 tRNA(Ile)-lysidine synthase; TrEMBL-Plants: tr|A0A1B5Z791|A0A1B5Z791_TRISU Uncharacterized protein; Found in the gene: LotjaGi3g1v0461900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87697357..87702889) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGCCATGACAAGAACAGTTGAAAACTACATGCCTAACAATCACAATTCACAACTTCTATTTTCTAACAGGAGGAC TATGATTAAAAATGCTAATTAACAGTGTACAAACATAGGCATCGTGAATATCTCTAACTCAGTAGTTCCCTACATAAAGT ACGGGGAAAGTGAACTGTCCATGTAAATTTCAGTGGCCTATTTCAATGCTAGGCCGAATCCAAACTTGGGATAATTTGCT TAAGAGACAAGTAATTCATACTGCTGATGAAGCTCTTTGTCCGCTGTGTGGCCTGGTGGAGGAGTCGTGCTCTCACTTGC TTTTTACGTGCCCTACTGTACTGCTGATATGGTATGACTGCTACGCTTGGCTGGGTATATCCACAGCCCAGGTTACTGAT CCAGAGGTCCATTTACTGCAATTTGCCTCAATTGGGAGTGATAAAGCTCAAAAATTAGGTGTAATTGCAATCTGGTTGGG AGTAGTTTGGTCACTATGGTGTATGCGTAATAGAGTTATTTTTAATGGAGGAGAGGTGGATAAAGCCCAAGTTCTGGAGC AGGTTCAGATTAAATCGTGGCAATGGCTCAGCCCCCTCACGGGGCTTTCCAAATCTCTTTGGATTTATTTTTCGTACTTT GCTTCCGCTTGTTAGTTCTAGCCGTTTTCTTATGGCCTTGTTTCTTTCTGATTATGGCTCCCTTTCTCTTGGAACCCTAG TGATCGTTGTCACGTTCTTGGCAGTCACCATTAACGTTCAACACTGTCAACGTCCTTCTACCGCCGTTTTCCGAAGTTGC TCATAACAGATCAAAGACACCTCCATCTTTTCCCTGAAGCGCCGCCGCCTGTATCTTGAGCAAGGTTGCTCCTTGAGCGG GCAAGTCTCATTGATTAGTGAACACTAAAAATCTGTGGTAGGAATATCTTTGTCTCTCCCACGGTACCCCCGTTCATAAT TTTGTGGTGACTGATATTATTTTTCACATACTTTTTCTCTACATGGTGTAGTTTATTCAATTTGTACAATTTGGAAAGAT GCCACATTACTACGGTTATTGGACTTGGCAATTGTGGTATTTTGAGTATGGAATGAGTATGATTGATTTCTCGTGAGCAG TAGTGATGTTTGTGGCTGGCTAAGTACAAGAGAGTTTCATGTTGGTTACTTAGCTGGTGCAATCATCATCGATGCGTTTT TTCATGAAACTGTGTCTAACTTTTCATCTGGCTACACCAAGGGATGAATTGGAATTGAATTTGAAGACTTGGGCTGTTGG TTCAATAGCTTTAAGAACAAATATTTGTTACAAGCTATGCATAACAATGGTTCTAGACTTGTAGTAAACAACCATGAATA TCAATCATGATAAATGTTAAAACTTGATAGGAAAATTATCTGCAGGAAGCTTTTTGCCACTTTGCTTCTGCACAAAGGGG TATAAACCGGTCAATGTGAGTGAAAGAAACAGAATTTATGAAGTGGAGAAAATATATTGCTCTCTACCTTCTCCATTGGT GCGGCTGCAATATTGCGGAGAATTGCAGTGTAAACGGAATTCAGACGGAATAGCTGTTACAAAACCCCAATTTCACCGTA TCACTGCCGCTCCGGTGGCCGCAACAGGCGTTCCGTGTTTCTTCAGTCTGATCTGCTTCAGCATTCCTTGACGAGCTCGA GAGCGATCTTCAGGTAACTGACTTTGATTGAATTCTTCTCTGATTATTTTGTGTTTCAATTCTTCTCTAGGGGGTTTGGC CCATACTTTAACAGGTAATTAATTTTGAATGAATTCTTACTTTTTCTTTAACGAATCCACCACTCCTATTTCTCTCTTTG ATAGGTTTGGTGAAGGTAAAGAGCAATTTCTTTAGGAATGAATAGAGAAGAGATGGATGTGACATGTCGTTGCTTCCACT GCAAATTGCAATCTCACCGCAGCTTTCACTCTTCCATTTCATCTATCGGAAAAGTAATTTCTTTCACTCTAATCCTTCTC TATCAATAGGCAATTTCCTACCCCTTCACAGCTTTCCCTTTCACTCTCGAAATCTCCAGATCCCCTCCTCCCTTCACAGC TTTGATGACTGTTCAATTTCCAGACAGAACCATCATAGTCACCTCCTCCTTCTTACCTCCATCAATAGCCACCTCCTCAC CTTTCCATATGCACCCTGTCTGTCGAGAGCTTCCATCAAGCCGGGCACGACAGAAGCAACTCCACCGTGCGGTTGTTCCA TGACGCCACTTTGGCCGTTGCCCCATAGACTTTTCTAGGTGATTTTTATGATTACTGTTTTCATAATTTTGTCTCTCCTT TTTACATTGTTCTTTATGCTGTCTGTTTATTTTTACACAAATTAAATTCATTGTTTTATTTAATTTTATCTTGATAGAGT TGTCCTATCTATTTCCAAATGTCCGGGTGTTGTAATATTGCTTTTCTTTTGCTTCTTTTGGTGGCTTATTGGTTTACAGT GTCTGCAGGGTATGTTTCACACCATTTTTGTGTTAGTTAAATCCTGTTGTCCCTTTGGTCTTGGATTGCATATCTAACTG TTGCAATTGCAACTTTAGGATTTTAGACACCAATCAAAATGATTGTTTTATGATTTGGGTAGATAGTGGTTCAATTCCTT AAAAATCAAACTCATTTAGAATTTAAGATACTGCTTTTCTTATAGGATTCAAGAACACTTCTACCTCTTCTTTCATGCCA TCCATATCTGGCTCTTCTGACATAAAATTTAGCTCCCTGCCATAAGTTTGAGGACAAATGTAAATATGCTGCAGTTGGCT AAAGGTTATGTAGATGAACACAGACATACAACTTTTATTTATAATATACATTTCTTTGTACTTTCACATATTGCATACTG ATGTGGTCCTTTATCCCTTCATTATAACTGTAAAGAGAAAGTTGAGCGTCCTTTCAGCCTATTTATAAATTATTGTCTCT TTTTTTTTGATGAAAAAGTATCATCTCCTTACTTTCATGACACCATGATGATAAATGAACTTGCATAACTAATCCACATC AATGCAGGTATCGTTCTAGAAGCAACACTTTTGCCATTTAAGAAATTCTATGGAGATGTCATTTGTGCTTTATAAGGATT GGATTTTCCCAAGCAAGTACTGATCACAAATCTTCTGAAGAGGTAAACTACACATGCAATGACCATTTGATACATATGCG CTAAGTTACCTATTTCACGCCTTCGTTTTCAAATGCAGCATTTACTGTATTGGAGTTTGTGAGTCGAAGTTGCGAATTAT TTTTCTTTCTAATATTGCAAGCAATTAAATACATAACTGATTAGAAAATCTTAGGATTCCTGCAGACAAATAAATAGAAT GTACTCTCAGTATCCCTTAATCTAGATAAATATAACTCTTCTATCTATGTAATCAATTAGAGCTAGCATAACATGAGGCA GATTTGAGAGATTTAACATTGGAATTTTGAAATCTATTTGTATATTGTCTAAAATATATAGATAACTGTATAGGAGAAAA TTTTGAAAAATAAGAGATTGAAGAACGGAAAAGGGAGATACTCTTGAATAAGAGGAACAACAACCTCATTGTATAATTAA CGCCCAAAGAAGAGTGATTTTAGTATTGAGAAAATGTCGAGAATAAAAAAAAATTTACAGTTTGAACTAGAGTTGAAATC TTTAAAAGTGACCAATGGAATACTTGAGGATCAAATAAGATATCAGAAATAGAAAAGTTCAAATGTATGTACAAAGCTGA ATTGAAATAGGCTCATCACAAAGTTTTGGCATTAAAATCATGAAAATAACGAGAAAGATAGAAGCTGATTATGACTAGAA TGATAGGAAGAAAAAACTAAGTGAGTAATATTTCTCAAAGTGACTAATTTTAAGGCTACATACTAATTTATATTTAATAG TTTTGATGTCTAATTATGACTAGAAGCATGTGTTTTAAACAAGGATGATATATGCACCTGACATGTGCAAGTCTTTGAAG GTCTGATATAAACCTGATATGCTTTTTATTGTTATTACGTAGTTTGCTTTCCATTTGCCTCTTTAATTATGTTGGTTGAC AAGCATATGTCTTGCAGAACGCTAGCGAGGCTTTCTAAATTGGCTTATACCTTGATGAGGTGATTTGCCTTTTTTTCCTT CTCTATTTGGCACTTTATTGCTCACCTTTGCTCGAAGTGACTAATTTTAAGGCTACATATTGATTTTGCTCACCTTTTCC GTCTTTGTTCTCCTTGCTTTTTTACTACTTTGTTCTTACACAATGTGTTGTTTTGTCGACTATGTTCTTCTAGGATTTCA GTGTCATAAGCTTTGCTCTTCTGCTGTGCCGTTTCCCGTTTCTCGAATTCATCTGTCTGTAGCCTTTTGTTTTTTGGTGA GTAGAAAGACTTATTTCCTTCTTTGGTCTACATAATCTATGAATCATTGATACATGTGTTTCCTTCATGTATTCGTATTC ATATAGGATACAAGTTCTCTTCAGGGATGTTAATTAGATCCTTACGACATGTATTCATATCTTCTTCATGTTAATTAGTT CTATTATTTCGACGCACTTAAAAAGCCTTATTTAGTGTATAGAGGATAATAAACTGAGCAAATTATGAACAAAAGACCTT TTATGGTAGCAACAACGATGTCACTACCCAATTATTGTCCTGAAAGCTCATGTGGCCAGTGTAAGTTCGAGGCTCATATA TACATATATCTTCAAGAATTAAGAAAATCAGCTTTGTTTCTCTTCTTCCGTTTAAAATAGTCATGATATTTAATCATTTT TCAGCTTCTGTTTTGAGCACTATTAAATCACTTAAATGGGAGTTACTGTTAGTAATAAAGTCACTTTTAATTAAAGGTTT GACAGTTACAGAAACGAATGGTCATGAGTTATTATGCATTAAGTGCGTTTAAGGGTCATCATTATTTGTTAGCTAACCAC TACGCATTAGCTTTATGTCTATTTAGTATTTTTCATTGAGGAGTATCATGTCATGTAGCATGTCCAAATCTACCTTCTCA TGTAGCATGCACCAATTGAGGAAATGATAAAGTTTCTTTCTGGATTAAATGATGATTCATAAGGGAACATGAAGAACTTC ATTTTTGTCTATGTGGCTGTGGGCCTAATGTTCCACTTTATTTAGCACCAATTAGTTTGGATGGGCTACTAAAATGTTGA CAGAAGAATGAGACTTGAAACACTTCTCACCCCAGGTTGGAAGTAGAAGAAAGCGTATATTGTTTTGATAACTAAAATAT GTTCTGTGAGCTATTTGCCAAAAGAAACAAAAGAACTCTGCCATGTAATATGCATCCTCTTACAATACGACCATTAGACC CCTTTATATAAACTAAACAAAAATGTTACTAGCATAAAAAAAAAACAAAAATGTTACTGAGGACAAGTCTTATCACAACT TTCCAAAAACTTGAGCCAATTTTTTTATAATTTGATTCTGAAAGTACCTCATTTGATAGATAAGAGTTTTAGTTTTCAAG CTGAAGAAGTCCA
CDS sequence (LotjaGi3g1v0461900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTAGGCCGAATCCAAACTTGGGATAATTTGCTTAAGAGACAAGTAATTCATACTGCTGATGAAGCTCTTTGTCCGCT GTGTGGCCTGGTGGAGGAGTCGTGCTCTCACTTGCTTTTTACGTGCCCTACTGTACTGCTGATATGGTATGACTGCTACG CTTGGCTGGGTATATCCACAGCCCAGGTTACTGATCCAGAGGTCCATTTACTGCAATTTGCCTCAATTGGGAGTGATAAA GCTCAAAAATTAGGTGTAATTGCAATCTGGTTGGGAGTAGTTTGGTCACTATGGTGTATGCGTAATAGAGTTATTTTTAA TGGAGGAGAGGTGGATAAAGCCCAAGTTCTGGAGCAGGTTCAGATTAAATCGTGGCAATGGCTCAGCCCCCTCACGGGGC TTTCCAAATCTCTTTGGATTTATTTTTCGTACTTTGCTTCCGCTTGTTAG
Protein sequence (LotjaGi3g1v0461900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLGRIQTWDNLLKRQVIHTADEALCPLCGLVEESCSHLLFTCPTVLLIWYDCYAWLGISTAQVTDPEVHLLQFASIGSDK AQKLGVIAIWLGVVWSLWCMRNRVIFNGGEVDKAQVLEQVQIKSWQWLSPLTGLSKSLWIYFSYFASAC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 131 | 131 | 8.0E-20 | – | |
| PANTHER | 1 | 131 | 131 | 8.0E-20 | – | |
| Pfam | 3 | 49 | 47 | 5.1E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0461900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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