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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462100 |
| Transcript ID | LotjaGi3g1v0462100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Calcium-binding family protein; TAIR: AT5G54490.1 pinoid-binding protein 1; Swiss-Prot: sp|Q9LSQ6|PBP1_ARATH Calcium-binding protein PBP1; TrEMBL-Plants: tr|I3SNX6|I3SNX6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0462100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87725509..87726474) extracted from Lotus japonicus Gifu genome v1.2.
GCTTATTACTTATAGGATAAGGCATGCAAATTGTCTAAGATGCCCCTGATAAACTTTCTGGGAAACAGGAAAGCAGGTGC GGTTTCTTGTCCAGAATCAAAGCTGACGAGCGAATATTTCCCTGTTTCTTTGCTGTCATCCGTGGATGGATGGATCATTA CTTCTTTCCTTTCCAACCTCTCCCTCTCCTACCTTGAACTTCAACCATCTTTACCATTCTTCTTCTACTTCACAAGTATA AATAGGACTCCTACTCCAACCTCACCAAAACAAACTCACATTACACACATTCAACACATTCTTAATTGTTGTTCTCTTAT GACACAATCATCAAACAATGGCTGGAACTGGAACTGTCAATGGCAAAGGTCTTGAGTTTGAAGACTTGCTTCCGGTGATG GCGAACAAGCTAGGTGGGGAGGGTCTGATAAAGGAACTATGCAACGGGTTCGATATGCTGATGGACAAGGACAGAGGGGT CATCACACTCGAGAGCTTGAAGACCAACGCTGCTGTTCTTGGCCTGCAGGACATGAAGGAAGACGAGCTTGTGAGCATGA TTAGAGAAGGGGATCTAGATGGAGATGGTGCTCTTACCCAGATGGAGTTCTGCGTTTTGATGTTCAGGTTGAGCCCTGAG TTGATGGAAGAGTCATGGATTTGGCTTGAAGAGGCTCTGCAACATGAACTTGACAACAATTATTCACTCTAGTTTCTAGG AATAACAATTCTGATAGTGGTTTCTCTTCTCCTTAGTTGTGTTAAGAGCTTCTGTTCTGTTGTTACTATTCTTCATCCTG TTGCCTATATTGGAAAGAATTGAATTAACCATTTTTTGTACTCTGCTTTTGATGTTCTTTTACTTGATGCGCATGAGAAA TTGAGATAGAACTGAAAATGCATTGGCTAATTGATTGTATGGTTTTTGTTGATTCATAAATTGTGGCATGACAAAGGCTA TAAGGA
CDS sequence (LotjaGi3g1v0462100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGGAACTGGAACTGTCAATGGCAAAGGTCTTGAGTTTGAAGACTTGCTTCCGGTGATGGCGAACAAGCTAGGTGG GGAGGGTCTGATAAAGGAACTATGCAACGGGTTCGATATGCTGATGGACAAGGACAGAGGGGTCATCACACTCGAGAGCT TGAAGACCAACGCTGCTGTTCTTGGCCTGCAGGACATGAAGGAAGACGAGCTTGTGAGCATGATTAGAGAAGGGGATCTA GATGGAGATGGTGCTCTTACCCAGATGGAGTTCTGCGTTTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAAGAGTCATG GATTTGGCTTGAAGAGGCTCTGCAACATGAACTTGACAACAATTATTCACTCTAG
Protein sequence (LotjaGi3g1v0462100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAGTGTVNGKGLEFEDLLPVMANKLGGEGLIKELCNGFDMLMDKDRGVITLESLKTNAAVLGLQDMKEDELVSMIREGDL DGDGALTQMEFCVLMFRLSPELMEESWIWLEEALQHELDNNYSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 121 | 113 | 1.2E-63 | – | |
| PANTHER | 9 | 121 | 113 | 1.2E-63 | – | |
| SUPERFAMILY | 9 | 105 | 97 | 9.72E-13 | ||
| Gene3D | 12 | 123 | 112 | 4.2E-22 | – | |
| Pfam | 46 | 97 | 52 | 2.3E-18 | – | |
| ProSiteProfiles | 66 | 101 | 36 | 10.692 | ||
| SMART | 70 | 98 | 29 | 0.0051 | ||
| ProSitePatterns | 79 | 91 | 13 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi3g1v0462100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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