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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0462500 |
| Transcript ID | LotjaGi3g1v0462500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | transmembrane protein, putative (DUF1218); TAIR: AT2G32280.1 GPI inositol-deacylase C, putative (DUF1218); TrEMBL-Plants: tr|I1LRU0|I1LRU0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0462500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:87749147..87749927) extracted from Lotus japonicus Gifu genome v1.2.
ATGGATGTTGCAGCTGGGATTCTTGCCTTCCAAGCTGAAATAGCACAAAACAAGGTATGCTTGAAGCTGGCACTATTTTT TAGGTGCATTTACTAAATGTGTGTCAGAACAGCTATAGTATACTGAGATCTATGTTAAACTACGATGTTTGTTTTGAACA AACAGGTCAAGCATTTAAGACTGTGGATATTTGAGTGTAGAGAACCAAGTCATCAAGCCTTCATGCTGGGTTTGGGTGCA GCAGTGCTTTTAGGACTAGCCCATGCTATTGCCAATTTGCTAGGTGGCTGCAGTTGCATTTGTTCTCAACAAGAGTTTGA GAAAGCTGCCCCCAGTAGGCAACTCTCAGTGGCTTGCCTTATTTTAACTTGGTAATGTACTTGCATCAGCTTATTTTTCT TGAGAATCAATTCAAACACTCATAAATTATTTAGTGCATGTTTGGATACACGGTGAAAAACCATAGTGAAATCAAAATCA CGATATCCAAACATGCACTTGCAAAATCTTCTCCTTGGAATTGACTTTGGCTACAGAATCAACAGTATCAATCGTAGAAT CATTTTTTTTTACTTTACTCATTTTGATTGTGTTGTTGATCAGGGTCCTGTTGGCCGTTGGATTGTCCATGCTAGTGATA GGGGCTTTGTCAAACAACAGATCAGACGGTTCCTGTGGTTTATCACACCATCACTTCCTGTCCATTGGTGGGATTTCATG TTTTGTTCATGGCCTATTCTGTGTTGCATATTACGTTTCTGCCACTTCCTCCATGGATTAG
CDS sequence (LotjaGi3g1v0462500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTTTTGAACAAACAGGTCAAGCATTTAAGACTGTGGATATTTGAGTGTAGAGAACCAAGTCATCAAGCCTTCAT GCTGGGTTTGGGTGCAGCAGTGCTTTTAGGACTAGCCCATGCTATTGCCAATTTGCTAGGTGGCTGCAGTTGCATTTGTT CTCAACAAGAGTTTGAGAAAGCTGCCCCCAGTAGGCAACTCTCAGTGGCTTGCCTTATTTTAACTTGGGTCCTGTTGGCC GTTGGATTGTCCATGCTAGTGATAGGGGCTTTGTCAAACAACAGATCAGACGGTTCCTGTGGTTTATCACACCATCACTT CCTGTCCATTGGTGGGATTTCATGTTTTGTTCATGGCCTATTCTGTGTTGCATATTACGTTTCTGCCACTTCCTCCATGG ATTAG
Protein sequence (LotjaGi3g1v0462500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVLNKQVKHLRLWIFECREPSHQAFMLGLGAAVLLGLAHAIANLLGGCSCICSQQEFEKAAPSRQLSVACLILTWVLLA VGLSMLVIGALSNNRSDGSCGLSHHHFLSIGGISCFVHGLFCVAYYVSATSSMD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | - | – | |
| PANTHER | 8 | 134 | 127 | 2.7E-72 | – | |
| PANTHER | 8 | 134 | 127 | 2.7E-72 | – | |
| Phobius | 25 | 46 | 22 | - | – | |
| TMHMM | 26 | 48 | 23 | - | – | |
| Pfam | 32 | 119 | 88 | 1.7E-18 | ||
| Phobius | 47 | 66 | 20 | - | – | |
| Phobius | 67 | 87 | 21 | - | – | |
| TMHMM | 69 | 91 | 23 | - | – | |
| Phobius | 88 | 106 | 19 | - | – | |
| TMHMM | 106 | 128 | 23 | - | – | |
| Phobius | 107 | 127 | 21 | - | – | |
| Phobius | 128 | 134 | 7 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0462500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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