Transcript — View — Lotus Base

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LotjaGi3g1v0465300.1

Overview

Field	Value
Gene ID	LotjaGi3g1v0465300
Transcript ID	LotjaGi3g1v0465300.1
Lotus japonicus genome version	Gifu v1.2
Description	Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp\|P46209\|USF_AQUPY Protein usf; TrEMBL-Plants: tr\|A0A072UJ41\|A0A072UJ41_MEDTR Dienelactone hydrolase family protein; Found in the gene: LotjaGi3g1v0465300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr3:88080265..88083378) extracted from Lotus japonicus Gifu genome v1.2.

ATTCAAACTGCAACTAGAAACCCTGAAGTGAAGAGTGTGACTGCATGCTTCGCTCGGAATGTTGAGAGTTGTGAGATCAT CCGCTCCCAGATTCTTCACTACAGCCCCTCCTCGTTTCTCAGTTCGTTCCATCGCTGATTCTGCTGCTCCTTTCCACAAA ATCCAGATTCAAAGGGAAGACACTGTGAGTTTTCCTCTTCACCACAACCCCATTTCATAATGGAACTTGTTTTTTGGGCA CCAAATGTGTTATGGTGATGATTCTGACCTGCTTTTTTATGTGGATCAATTCATTGTTAGGTTTGGTGGCCAATGGAAAC ATTGAATTAGTTTTTTGAACTTGTAATGATAATGCCAAATGCTAATGTTCTGTTATGCTATGCTCATGTTGTTGTTGTTG TTGTTTTCAATGATTAGAAATTTGATGCATATGTTGTTGGCAAGCACGACGCGCCGGGAATTGTTGTGCTTCAGGACTGG TTGGGTGTAGATAATGAAATAAAAGATCATGCATTGAGGATTTCTCAGCTTGGGCGTGGATTTAAAGCTCTTATTCCAGA GTAGGATAACGTTGCTACCTAAAATTTCTTAGTATTTGTTCTTGTAGTGTCATATTCTGTATTAGGAATTTGGATCACTC ATAGGTTTTGCTTTTTTACCCAGTCTGCATAGAGGAAACGCAAAGCAATTGTTTCGTGGTCGTGATTGGACAGGTACTAT TGAGGATGTTATTTCTTCAGTTAACTGGCTTAAAAACAATGGTTCGGAGAAGGTTTGTCTATTTTCATGTGTTGTCAAGA TGAAAATTGATTCTGTTTTAAAATTCCATATCCACTACACTATCATGGTTAACATACTTGTGTCTAGGTTGCAAAAGGTT CTTCTTGTTCTTCAACCCACAAAGACATAATTAGCCTTTTGCATATTTAGAGTGCTTTTGTTTATCCATTAGATTAGATT GAATGTGAATCTGATTTTTCTCAATCCAACAACTTTGCTAAACTGTTGCTAAATTTGTAAGTTGAATGTACTTCCAACTG GAAACCAAACTGACTCTTAGTGAGTTAGTGTGAGGGCCAGTTTGGCGCACCTTATTAGGCATGATTAAATAAGCTAGTAG AATATGTTAGGATGGTTGTGAATTGATATTTCATTGTAACAGGTTGGTGTGACTGGCTTTCGTATGGGGGGTGCTCTCGC TATTGCCAGCTCTAACATGATTTCTGATTTAAACGTTGATGCGATTGTAGCTTTCTATGGCGTTCCTTGTTCCTTGGATG GCAATGGCAGATTTCCTGTTCAGGCTCACTTTGGGGAGCTGGACGAATTTGTTGGCTTTTCGGATGTTACGGTATGTTTG CAGCACACATTGCTGGTCATTCGTCTTTTACTTGAATATCACTGCATTTTCTTGTTTGTAAGGGGAGGGGCTTCCCTAGC TTCCAAATCTTACGGGTTTCTTTCTTATTGGTATGCAAAAGGTCTCTTTTCCAGTTTTCCTGAAACAGAAGGTGTGTTTG GTTAAAAACCTAATGGTGGAGGTTTGGGAATGAGAAGTGAAAAGCATTATGTGCTTTCTTGGTAAGAGAAAATGTACAAA GACTTCTAAAGCCTAGTGATTGTTTGACTTACTCCGTAGGCTTAACCTTTCTATAGTTCTACCATTTCCTACTTTGCCAA TGCTATACGATGTGAAATACTTTAAATTTCAATTCAAATGCTCTTGATGATATATAATCTCTTGATTTGTTTAGTTTTCT ATTCTCTGACTAGAGAGAACACATGTTGATGTTCTGGCTCAAAATCCTTTGATTCAAGAATCATAATTTTATGATACTGT TTAATGTCTCAGGCTGTGAAAAGATTGGAGGAGAAATTGAAGGATTCTGGAGCTCCACATGAGATACACATATATCCTGG CAAAAGACATGCATTTATGAACATGAGAATGCATGATGAAGATGATGCTGCAGTCCAGCTCGCCTGGTCTCGCTTCCAGT CGTGGATGACAACTTACTTGTATAGTTAGGTAATTTATCACTAGCTGAAATATGGTAAAATGCTAATCTTAGTTAGAAAA GTAACATGACTGCTGTTAAGCTCTAATCAAACACGGTGCTTCATAACTTTGGGTTGTTACTTTTGAGAAATTTGACTTGA GGAATAATTTTGAACTGATTGTGGTTTTTCTGTATTAAGAAAATATGGTCTTTAACTTGTGCTATTGTTCATGAATTCCG ACCGTGATGTTTTGCCTATAAGTAGACAATCAAATTTCCCTATCGTATCTTGAATGTTTCTCTTATTTGAGACACTTGTC TTGAATGTTGTTGTATATAACATGAAGTCAACCACAAAATAATTTCGATTATTTAACTGAAACTATAATAAAAAATTTAT AATGGTATAGTGGGAAATGTTACTAAAAGTTACCATTTGAAAGTTGAAGAATGGAGAGTGCTCTAATTGTTTAAAATTGC TTATATGGAAAGAAATAAGAATAGAAAAAAAAATGATGTGACAGCTCTACACCTCGTGCTTCAGATTTAATATGTTATAA ATAGTTTTTTTTACGATAGTTGTCATTAAAGGATAATGATAAAGTATAATGGTGAGAAGTATCTGCTCTGTTTTCTCAGC TAGTAAGATAATATTCATGGAAACGGAGGCAGTGTCAGAAGCTTCACTGATCAATTCAGCACAGACAAATTCTCACAGTT CATGTTTAATACTCTTTTCAAATTTGCAATCTTCACAACAATAGATTGACTTCCTTAACTGGTGAAGGTGCTTGAGGTTC AAGACTAATGGATTATGTGGTAAGAGCTGGATAGATACAAACTAAGAGTACACACAACACTAAGAGTACAAACTTATTAA AGCTTATCCATTAGTAAAAGACTTGATAAGCTTCAATAAATATTCTTTATTTTACATTCAGATGAGTTCTATTTCTTTAT TTTTTACTCTTTGATACTTAACTGGGCTAATTTTTAAGTAGTATTTGGGCCACTTTAGTTGAAATACCTCTATGGGCTTC CACAATCAGACCAAGTGTTGCAATATATTGTAATTACATTGGCTAATGAAAATAATGAGATATTTTCAGTGTTG

Download Genomic Sequence

CDS sequence (LotjaGi3g1v0465300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGAGAGTTGTGAGATCATCCGCTCCCAGATTCTTCACTACAGCCCCTCCTCGTTTCTCAGTTCGTTCCATCGCTGA TTCTGCTGCTCCTTTCCACAAAATCCAGATTCAAAGGGAAGACACTAAATTTGATGCATATGTTGTTGGCAAGCACGACG CGCCGGGAATTGTTGTGCTTCAGGACTGGTTGGGTGTAGATAATGAAATAAAAGATCATGCATTGAGGATTTCTCAGCTT GGGCGTGGATTTAAAGCTCTTATTCCAGATCTGCATAGAGGAAACGCAAAGCAATTGTTTCGTGGTCGTGATTGGACAGG TACTATTGAGGATGTTATTTCTTCAGTTAACTGGCTTAAAAACAATGGTTCGGAGAAGGTTGGTGTGACTGGCTTTCGTA TGGGGGGTGCTCTCGCTATTGCCAGCTCTAACATGATTTCTGATTTAAACGTTGATGCGATTGTAGCTTTCTATGGCGTT CCTTGTTCCTTGGATGGCAATGGCAGATTTCCTGTTCAGGCTCACTTTGGGGAGCTGGACGAATTTGTTGGCTTTTCGGA TGTTACGGCTGTGAAAAGATTGGAGGAGAAATTGAAGGATTCTGGAGCTCCACATGAGATACACATATATCCTGGCAAAA GACATGCATTTATGAACATGAGAATGCATGATGAAGATGATGCTGCAGTCCAGCTCGCCTGGTCTCGCTTCCAGTCGTGG ATGACAACTTACTTGTATAGTTAG

Download CDS Sequence

Protein sequence (LotjaGi3g1v0465300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLRVVRSSAPRFFTTAPPRFSVRSIADSAAPFHKIQIQREDTKFDAYVVGKHDAPGIVVLQDWLGVDNEIKDHALRISQL GRGFKALIPDLHRGNAKQLFRGRDWTGTIEDVISSVNWLKNNGSEKVGVTGFRMGGALAIASSNMISDLNVDAIVAFYGV PCSLDGNGRFPVQAHFGELDEFVGFSDVTAVKRLEEKLKDSGAPHEIHIYPGKRHAFMNMRMHDEDDAAVQLAWSRFQSW MTTYLYS

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR46623:SF1 View details on PTHR46623:SF1 Search for proteins/transripts with this domain View external data on PTHR46623:SF1	1	247	247	3.3E-105	–
PANTHER	PTHR46623 View details on PTHR46623 Search for proteins/transripts with this domain View external data on PTHR46623	1	247	247	3.3E-105	–
Gene3D	G3DSA:3.40.50.1820 View details on G3DSA:3.40.50.1820 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.1820	24	245	222	3.9E-36	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF53474 View details on SSF53474 Search for proteins/transripts with this domain View external data on SSF53474	33	245	213	3.79E-30	IPR029058 Show description in modal box View details on IPR029058 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF01738 View details on PF01738 Search for proteins/transripts with this domain View external data on PF01738	44	244	201	3.0E-40	IPR002925 Show description in modal box View details on IPR002925 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0016787 View details of GO:0016787 AmiGO InterPro QuickGO	Molecular function	Hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.	Subterm of View details of GO:0003824

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0465300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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