Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002925
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 41 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.565s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0043039.1
n.a. TPA: protein usf [Zea mays] gi|414881964|tpg|DAA59095.1| chr0 14128291 14132914 +
2 domain predictions
1 GO term
Lj0g3v0043039.2
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 14128291 14133972 +
2 domain predictions
1 GO term
Lj0g3v0043049.1
n.a. PREDICTED: protein usf-like [Fragaria vesca subsp]. vesca] gi|470103051|ref|XP_004287959.1| chr0 14135202 14137759 -
2 domain predictions
1 GO term
Lj0g3v0076219.1
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 29019768 29021636 +
2 domain predictions
1 GO term
Lj0g3v0076219.2
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 29019768 29021636 +
2 domain predictions
1 GO term
Lj0g3v0211679.1
n.a. Esterase/lipase/thioesterase [Medicago truncatula] gi|124359241|gb|ABN05746.1| chr0 106680142 106681330 -
2 domain predictions
1 GO term
Lj0g3v0324069.1
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr0 169342339 169346470 -
2 domain predictions
1 GO term
Lj0g3v0353529.1
n.a. TPA: protein usf [Zea mays] gi|414881964|tpg|DAA59095.1| chr0 186088579 186088981 -
2 domain predictions
1 GO term
Lj2g3v1252830.1
n.a. PREDICTED: protein usf-like [Cicer arietinum] gi|502145958|ref|XP_004506256.1| chr2 19986678 19989339 +
2 domain predictions
1 GO term
Lj3g3v1311750.1
n.a. PREDICTED: protein usf-like [Fragaria vesca subsp]. vesca] gi|470103051|ref|XP_004287959.1| chr3 16978701 16982534 +
2 domain predictions
1 GO term
Lj3g3v2902980.1
n.a. PREDICTED: protein usf-like [Cicer arietinum] gi|502145958|ref|XP_004506256.1| chr3 35986070 35988760 +
2 domain predictions
1 GO term
Lj3g3v2902980.2
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr3 35986070 35988219 +
2 domain predictions
1 GO term
Lj3g3v2921080.1
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr3 36436633 36439731 -
2 domain predictions
1 GO term
Lj3g3v2995600.1
n.a. PREDICTED: protein usf-like [Cicer arietinum] gi|502145958|ref|XP_004506256.1| chr3 37158525 37160894 +
2 domain predictions
1 GO term
Lj4g3v2016150.1
n.a. PREDICTED: protein usf-like [Cicer arietinum] gi|502145958|ref|XP_004506256.1| chr4 27920412 27921643 +
2 domain predictions
1 GO term
Lj4g3v2377340.1
n.a. PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Glycine max] gi|356521937|ref|XP_003529606.1| chr4 32979108 32989475 -
2 domain predictions
1 GO term
Lj4g3v2377340.2
n.a. PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Glycine max] gi|356521937|ref|XP_003529606.1| chr4 32986061 32989475 -
2 domain predictions
1 GO term
Lj4g3v2378380.1
n.a. PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Glycine max] gi|356563644|ref|XP_003550071.1| chr4 32998242 32999875 -
2 domain predictions
1 GO term
Lj5g3v1426470.2
n.a. PREDICTED: protein usf-like [Glycine max] gi|356517659|ref|XP_003527504.1| chr5 21176966 21178966 +
2 domain predictions
1 GO term
Lj6g3v1887710.1
n.a. PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Glycine max] gi|356549017|ref|XP_003542895.1| chr6 20929747 20932628 +
2 domain predictions
1 GO term
Lj6g3v1887710.2
n.a. PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Glycine max] gi|356549017|ref|XP_003542895.1| chr6 20929747 20932628 +
2 domain predictions
1 GO term
LotjaGi1g1v0117600_LC.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P46209|USF_AQUPY Protein usf; TrEMBL-Plants: tr|A0A072UJ41|A0A072UJ41_MEDTR Dienelactone hydrolase family protein; Found in the gene: LotjaGi1g1v0117600_LC LjG1.1_chr1 18488981 18492195 +
2 domain predictions
1 GO term
LotjaGi2g1v0295800.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I3S5W0|I3S5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0295800 LjG1.1_chr2 77061623 77064311 -
2 domain predictions
1 GO term
LotjaGi2g1v0337100.1
n.a. alpha/beta-Hydrolases superfamily protein; TAIR: AT1G32190.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7ZVZ7|AB17C_DANRE Protein ABHD17C; TrEMBL-Plants: tr|A0A0L9URM7|A0A0L9URM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0337100 LjG1.1_chr2 81413881 81420055 +
2 domain predictions
1 GO term
LotjaGi3g1v0186300.1
n.a. Alpha/beta-hydrolase; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P46209|USF_AQUPY Protein usf; TrEMBL-Plants: tr|I3SAJ9|I3SAJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0186300 LjG1.1_chr3 26211478 26215476 +
2 domain predictions
1 GO term
LotjaGi3g1v0186700.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P46209|USF_AQUPY Protein usf; TrEMBL-Plants: tr|I3SDI1|I3SDI1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0186700 LjG1.1_chr3 26268469 26274184 -
2 domain predictions
1 GO term
LotjaGi3g1v0337900.1
n.a. 1,4-beta-D-glucanase; TAIR: AT1G35420.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q96DG6|CMBL_HUMAN Carboxymethylenebutenolidase homolog; TrEMBL-Plants: tr|I1KFZ9|I1KFZ9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0337900 LjG1.1_chr3 71001314 71007728 +
2 domain predictions
1 GO term
LotjaGi3g1v0465300.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|P46209|USF_AQUPY Protein usf; TrEMBL-Plants: tr|A0A072UJ41|A0A072UJ41_MEDTR Dienelactone hydrolase family protein; Found in the gene: LotjaGi3g1v0465300 LjG1.1_chr3 88080265 88083378 +
2 domain predictions
1 GO term
LotjaGi3g1v0468700.1
n.a. Alpha/beta-hydrolase; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I3SMB6|I3SMB6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0468700 LjG1.1_chr3 88436841 88440213 -
2 domain predictions
1 GO term
LotjaGi3g1v0473100.1
n.a. Pimeloyl-[acyl]-carrier protein] methyl ester esterase; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I3S5W0|I3S5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0473100 LjG1.1_chr3 89015606 89020013 -
2 domain predictions
1 GO term
LotjaGi3g1v0473100.2
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I3S5W0|I3S5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0473100 LjG1.1_chr3 89015606 89020013 -
2 domain predictions
1 GO term
LotjaGi3g1v0473100.3
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I3S5W0|I3S5W0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0473100 LjG1.1_chr3 89015663 89020013 -
2 domain predictions
1 GO term
LotjaGi3g1v0473200.1
n.a. Alpha/beta-hydrolase superfamily protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|V7AGX5|V7AGX5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0473200 LjG1.1_chr3 89020349 89024480 +
2 domain predictions
1 GO term
LotjaGi4g1v0350700_LC.1
n.a. Endo-1,3-1,4-beta-D-glucanase-like protein; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|B8M9K0|TROPI_TALSN Hydrolase tropI; TrEMBL-Plants: tr|A0A072US82|A0A072US82_MEDTR Endo-1,3-1,4-beta-D-glucanase-like protein; Found in the gene: LotjaGi4g1v0350700_LC LjG1.1_chr4 72936084 72936957 -
2 domain predictions
1 GO term
LotjaGi4g1v0350800.1
n.a. Endo-1,3(4)-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|I3SJ69|I3SJ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0350800 LjG1.1_chr4 72938970 72946804 -
2 domain predictions
1 GO term
LotjaGi4g1v0350800.2
n.a. Endo-1,3(4)-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|I3SJ69|I3SJ69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0350800 LjG1.1_chr4 72939622 72942595 -
2 domain predictions
1 GO term
LotjaGi4g1v0350900.1
n.a. Endo-1,3(4)-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|I3SLZ3|I3SLZ3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0350900 LjG1.1_chr4 72947404 72951168 -
2 domain predictions
1 GO term
LotjaGi5g1v0216100.1
n.a. Dienelactone hydrolase family protein; TAIR: AT2G32520.2 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q7DFU6|YGHX_ECOLI Putative uncharacterized protein YghX; TrEMBL-Plants: tr|I1KFF8|I1KFF8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0216100 LjG1.1_chr5 52185153 52188329 +
2 domain predictions
1 GO term
LotjaGi6g1v0300000.1
n.a. Endo-1,3,1,4-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|A0A151U0L2|A0A151U0L2_CAJCA Endo-1,3,1,4-beta-D-glucanase; Found in the gene: LotjaGi6g1v0300000 LjG1.1_chr6 61783444 61787196 +
2 domain predictions
1 GO term
LotjaGi6g1v0300000.2
n.a. Endo-1,3,1,4-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|A0A151U0L2|A0A151U0L2_CAJCA Endo-1,3,1,4-beta-D-glucanase; Found in the gene: LotjaGi6g1v0300000 LjG1.1_chr6 61783444 61787196 +
2 domain predictions
1 GO term
LotjaGi6g1v0300000.3
n.a. Endo-1,3,1,4-beta-D-glucanase; TAIR: AT3G23600.1 alpha/beta-Hydrolases superfamily protein; Swiss-Prot: sp|Q9ZT66|E134_MAIZE Endo-1,3;1,4-beta-D-glucanase; TrEMBL-Plants: tr|A0A151U0L2|A0A151U0L2_CAJCA Endo-1,3,1,4-beta-D-glucanase; Found in the gene: LotjaGi6g1v0300000 LjG1.1_chr6 61783444 61787196 +
2 domain predictions
1 GO term