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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0468600 |
| Transcript ID | LotjaGi3g1v0468600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WRKY family transcription factor; TAIR: AT1G62300.1 WRKY family transcription factor; Swiss-Prot: sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6; TrEMBL-Plants: tr|A0A151S0H3|A0A151S0H3_CAJCA WRKY transcription factor 6; Found in the gene: LotjaGi3g1v0468600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88427922..88432020) extracted from Lotus japonicus Gifu genome v1.2.
AGAATAGATACGTATCAACATGGAGAACTCTGCATTCAAAGCAGACACCTCCTCAATTTCACACCAACACAGTAGTACTC ATCTTCTCAAGTGAGTTTCAAGCTGACCCATTTTATTGCCGAGTCCATTGCATCAATATATATAAACACTTCACTCTCTC CCTTCTCTCTCTTTCTCTCTCTCTTGGAATTTATGGTTACTTAGAAGTGGTGGACTGAATCTTCATCTTTATGGATGATT CAGATCCAAGTGGTACATCCTCCTTTCTTCACAACAATCCAATTGTTCTCAACTCTTTCACCATGGAGGCTAAAGGGTCT TCTTCTTCTCCTTCTTCTTCACCCACACCAACCACCACCAACACCACCATCCCCTTCCAAGTCAACCTCACCTCTCCTAT AACAACAACATCATCTCATGAGAATAACATCATCAGAACAGAGGTGGACTTCTTCAAAGACAACAACAGCAATAAGGTTG TTGTCTCTGCTTCTGCCTCTGTCCCAGAAAACAACAACAACAATGATCATCATCATTTGCCCACCCCTTCTTTGTTGGAA TTCAAAGTAAACGTGAGTAACCCATCATTATATTTTGTCTATATTATAACATGGTTCTATGAAGTTCAATTTTTTTTAAT GATCATCTTGTGGGTGTGTGTGCTTGCTTATGAATCTGTAATCTTTTTGTTAATAGACTGGTCTGAATCTTCTCACTACC AACACTAGCAGTGATCAATCCATGGTGGACGATGGCAATGGCAATGGCATATCACCTAATTCAGATGACAAAAGAACTAA AAATGAGGTAAACGTAGAGAGTAAGAGTAGGGACCTTAGCTAGTTCAATTTGATGAAATTAAATTTTCTGTAATGGGGTG GTTCAAAATTGAGCATTTTTTATGTCATGTTTTTAATTTGAATCCGTTTTCCATGGGGTGGTTCAAAATTGAGCATTTTG AATTCATGTTGTTTGAAATTCAAACTTTGAGTCCATTTGCTATGAACTGTTTTTTCAGTTGGCTGTTCTTCAAGCTGAGC TAGAGCGAATGAAGGTGGAGAATCACCGGTTAAAGAACACGCTTGAGGAGATGAATACCAATTACAATGCCCTGCAGATG CATTTGGTGAGCATGATGCAGGACCAGAAAACTGAGGATGCTGAAAAACAGGAAGTGTTTGATGGGAAGTTGGAAGAGAA GAAGCAAGGTGCAGCGAATGGTGGTGGGGTTTTGGTTCCAAGGCAGTTTATGGATCTTGGGTTGGCTTCTAATGTTGAGA ATGATGAACCCTCTTCTTCATCATTGGGAAGAAGCCAGGATCAATCAGGATCAGCAGGGAATAACATGGAAGTGGGTTCC AAGGAATTGGCTACAATTAAGAATGGGAATGCTAGTGATGAAAGGGAGGATAGTCCTTCAGGTCAAGGTTGTGGTGCTGA TAAAGTTCCAAGGTCCAGTCTTCCAAAAAATAATGTTGATCAGGCTGAGGCTACCATGAGGAAGGCTAGAGTTTCTGTTA GAGCTCGATCAGAGGCACCCATGGTATGTCAGCGTACTAAAACTTACTGCATATTCGAAAACTCATTTGAAAAACAAGAT GAAACCAAAATCATGGTAGACAAAAGCAAAAGTTAAGAGAAATTGTTTCAATCCATCATGATTTTGACTTGACGGTGTTT TTTAAACAGTTCCCAAACATGCACTTCATTTTTCTCATGATAAATGTTTGCTCTGTTTAGCTGATACAAAAAACCATTTA ATTGTCTTAGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAATCCATGTCCTCGAGCTT ATTATCGATGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTAATATACATGTGATGCCATGTCCACAATAAAGCT TAATCAATTAGAAAATAATTGGCATCAGGAATAGAGTTTAGACATCCAAATTAGAAGAGTGAGAAACAGTAGAAAAGAGA TAATTGATTTGATAGGAAAAGAGAGGATTAGAGAAAAATGAGGTATATAAGATGACATTAATGATACTTTAGATATATAA ATCAGGGACACACCCAACATATATCCTATTTTCTCTCTCTCTAATCTCTATATCTCTCTATTTATCACATCCATTACTCC TTTCTTTTTCTTTTTTATCTCACACTAGATATATATTGGATGTCTGCACATGTTTGATGTTTTTACAACAATTTTCCATA AGATGGTGGTAATGTTGGCCTGTTTAAATATTAGAATTGTAATCAATCTCCTGCTTTGAAGTCATCAACATATCTGTCCT TAGTGGTGAGCTCTATGTATTGGCTCAACTAAGTATTAAATAAGTCTTCATCCACAGACAGTAAACATATTAATGATTTT GCTTTAATAATAGATTGAAGGATGTTTCATCTTTCAAGGCTTATTTTTAAGGGATTGAAATCTTCTCCAAATTGTGTCTC ATTTCTGGTCTCATCAGTAAAATTTTGTCATGTCAATTAAAAATCACCGTGTGAGTTTGTAGAAGAAAGAAATTAATGAG ACAGGAAATTGAAACACCAATTGGATAAAGAAAGAAGATCTTAATCCCATTTTTAGTTCTTCATGATGATTGGTTTAAAA CTCAAGTTGTTTAATTTCTAATCCAATATTTGATGCTTAACTAAACCTAACAGGTGCAAAGATGTGCTGAAGACAAAACA GTCCTCATCACAACCTATGAAGGCAACCACAACCACCCTCTCCCTCCAGCAGCAATGGCAATGGCACAGACCACTTCCTC AGCTGCAAGAATGCTTCTTTCAGGGTCAATGTCAAGCACTGACAACCTTATGAATGCAAACTTCCTGACAAGGACACTCC TTCCATGCTCTTCCAGCATGGCAACAATCTCAGCCTCAGCTCCATTCCCAACAGTCACACTTGACCTCACTCAATCACCA AATCCTCTTAACCCTCTTCAGTTCCCAAGGCCTCCAAACCAGTTGCAAATTCCCTTCCCAGGTGTGAATCCTCAGAATTT TGCAAACTCCCCTGCATCATTAATGCCTCAGATTTTTGGTCAAGCACTCTACAACCAGTCAAAGTTTTCTGGTCTTCAAT TGTCACAAGATGCTGCAGCAGGAGCACCAAACCTTGCTGACACAGTTAGTGCTGCCATTGCTACTGACCCAAATTTCACT GCAGCTTTAGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACCAAACAACAACAGTGGTGCTACTACTAACAATAA TGGCAACATGAATGCCAGCAACAGCAACAGCAACATCACAAGTAGCAACAACAATAGCAATGGAAAGTAATAAAATCATC AATTTTCCTATCTCTCAGGGAGTTAGTTTACAAACCCATCATTTTTTTTGGTGAGATTAATTTTATTTTATTTATTTGTC CTTCTATTGGGCTCAACAGTTAAGTTGATTTCATGGATTTTTTAGGTTCATTTGTTTTTTGTTTGGGATTCAGGAAAGTT TTGATATTTGAGGTAGATCTCTCATTTCAGTTGGGGATTTTATGTTTTGTTGCTATTCTTCAGAAGTATACTGAAAATTG TATTCCAGAATAACTGAGATTTTATAGACAAGAGAATCAGATCAGTTTCTCAATTAATTATGTGCGGACATGAAAATAGA TAGAAGAATTTTTTGATTTGTATGCTTTATTTTGCGTGTTTGGATCAGTGTTGTTGGGCCTGGCCAGAGGCTTCCTGATC GCGAGGATCGCCTGAGAGACGCTTAAGCCACGCAGCGGGCGAATTAATGAATGGCCATTAAGGTACACTTTACCTTCATG CTTCAGGCACGATGTCTTGTGTTCTGGTCAGCGGCTTCCTAGTCACGAGGCTTGCCCGAGTGACTCTCAAGTCGTGCCAA GAAAAGGGTCGTCCCATAAGACCATTCAGAAGTCTTTCTCAAGACAACCTACCTATTTGAAGGTTTTCATGTTGTCATAT GGGCGGTTATGTGTATATTATAGGATTGCCTCGCCCAAATGGAGAGCACGCACATATAAAGGGTTTGTTTGAGTAAAGGA CTTATAGTTTATTGCTTAT
CDS sequence (LotjaGi3g1v0468600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGATTCAGATCCAAGTGGTACATCCTCCTTTCTTCACAACAATCCAATTGTTCTCAACTCTTTCACCATGGAGGC TAAAGGGTCTTCTTCTTCTCCTTCTTCTTCACCCACACCAACCACCACCAACACCACCATCCCCTTCCAAGTCAACCTCA CCTCTCCTATAACAACAACATCATCTCATGAGAATAACATCATCAGAACAGAGGTGGACTTCTTCAAAGACAACAACAGC AATAAGGTTGTTGTCTCTGCTTCTGCCTCTGTCCCAGAAAACAACAACAACAATGATCATCATCATTTGCCCACCCCTTC TTTGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTCACTACCAACACTAGCAGTGATCAATCCATGGTGGACGATG GCAATGGCAATGGCATATCACCTAATTCAGATGACAAAAGAACTAAAAATGAGTTGGCTGTTCTTCAAGCTGAGCTAGAG CGAATGAAGGTGGAGAATCACCGGTTAAAGAACACGCTTGAGGAGATGAATACCAATTACAATGCCCTGCAGATGCATTT GGTGAGCATGATGCAGGACCAGAAAACTGAGGATGCTGAAAAACAGGAAGTGTTTGATGGGAAGTTGGAAGAGAAGAAGC AAGGTGCAGCGAATGGTGGTGGGGTTTTGGTTCCAAGGCAGTTTATGGATCTTGGGTTGGCTTCTAATGTTGAGAATGAT GAACCCTCTTCTTCATCATTGGGAAGAAGCCAGGATCAATCAGGATCAGCAGGGAATAACATGGAAGTGGGTTCCAAGGA ATTGGCTACAATTAAGAATGGGAATGCTAGTGATGAAAGGGAGGATAGTCCTTCAGGTCAAGGTTGTGGTGCTGATAAAG TTCCAAGGTCCAGTCTTCCAAAAAATAATGTTGATCAGGCTGAGGCTACCATGAGGAAGGCTAGAGTTTCTGTTAGAGCT CGATCAGAGGCACCCATGATCACTGATGGGTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAATCCATGTCC TCGAGCTTATTATCGATGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGATGTGCTGAAGACAAAACAG TCCTCATCACAACCTATGAAGGCAACCACAACCACCCTCTCCCTCCAGCAGCAATGGCAATGGCACAGACCACTTCCTCA GCTGCAAGAATGCTTCTTTCAGGGTCAATGTCAAGCACTGACAACCTTATGAATGCAAACTTCCTGACAAGGACACTCCT TCCATGCTCTTCCAGCATGGCAACAATCTCAGCCTCAGCTCCATTCCCAACAGTCACACTTGACCTCACTCAATCACCAA ATCCTCTTAACCCTCTTCAGTTCCCAAGGCCTCCAAACCAGTTGCAAATTCCCTTCCCAGGTGTGAATCCTCAGAATTTT GCAAACTCCCCTGCATCATTAATGCCTCAGATTTTTGGTCAAGCACTCTACAACCAGTCAAAGTTTTCTGGTCTTCAATT GTCACAAGATGCTGCAGCAGGAGCACCAAACCTTGCTGACACAGTTAGTGCTGCCATTGCTACTGACCCAAATTTCACTG CAGCTTTAGCAGCAGCTATCACTTCCATTATTGGTGGTGCTCAACCAAACAACAACAGTGGTGCTACTACTAACAATAAT GGCAACATGAATGCCAGCAACAGCAACAGCAACATCACAAGTAGCAACAACAATAGCAATGGAAAGTAA
Protein sequence (LotjaGi3g1v0468600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDDSDPSGTSSFLHNNPIVLNSFTMEAKGSSSSPSSSPTPTTTNTTIPFQVNLTSPITTTSSHENNIIRTEVDFFKDNNS NKVVVSASASVPENNNNNDHHHLPTPSLLEFKVNTGLNLLTTNTSSDQSMVDDGNGNGISPNSDDKRTKNELAVLQAELE RMKVENHRLKNTLEEMNTNYNALQMHLVSMMQDQKTEDAEKQEVFDGKLEEKKQGAANGGGVLVPRQFMDLGLASNVEND EPSSSSLGRSQDQSGSAGNNMEVGSKELATIKNGNASDEREDSPSGQGCGADKVPRSSLPKNNVDQAEATMRKARVSVRA RSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAAMAMAQTTSS AARMLLSGSMSSTDNLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLNPLQFPRPPNQLQIPFPGVNPQNF ANSPASLMPQIFGQALYNQSKFSGLQLSQDAAAGAPNLADTVSAAIATDPNFTAALAAAITSIIGGAQPNNNSGATTNNN GNMNASNSNSNITSSNNNSNGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 26 | 49 | 24 | - | – | |
| PANTHER | 41 | 576 | 536 | 1.8E-224 | – | |
| PANTHER | 41 | 576 | 536 | 1.8E-224 | – | |
| MobiDBLite | 122 | 146 | 25 | - | – | |
| MobiDBLite | 122 | 143 | 22 | - | – | |
| Coils | 145 | 186 | 42 | - | – | |
| MobiDBLite | 236 | 309 | 74 | - | – | |
| MobiDBLite | 237 | 263 | 27 | - | – | |
| Gene3D | 312 | 389 | 78 | 4.2E-33 | ||
| SUPERFAMILY | 320 | 388 | 69 | 1.15E-27 | ||
| ProSiteProfiles | 322 | 388 | 67 | 29.861 | ||
| SMART | 327 | 387 | 61 | 7.8E-37 | ||
| Pfam | 329 | 386 | 58 | 2.3E-24 | ||
| MobiDBLite | 546 | 582 | 37 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of LotjaGi3g1v0468600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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