Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470100 |
| Transcript ID | LotjaGi3g1v0470100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Fasciclin-like arabinogalactan protein; TAIR: AT5G06390.1 FASCICLIN-like arabinogalactan protein 17 precursor; Swiss-Prot: sp|Q66GR0|FLA17_ARATH Fasciclin-like arabinogalactan protein 17; TrEMBL-Plants: tr|A0A0S3SBS9|A0A0S3SBS9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0470100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88564284..88569565) extracted from Lotus japonicus Gifu genome v1.2.
CACGCGCCCAAGCCAACAACAAACTTTGATAAATTGCAAGCAACCAATGAAAGATATTCGGGTCATTCTATCATATTTCT AATGAATGTGAGATTTCGGGTTGTCAAGACTTGTGTTTTGTTTATTCACAAGCTGTATTGGACCCCACCCTCTAACCAGT TTGATACTTCCATGATACACCCTTTGCCTCTCTCCCTTCCCTTGAATAAAACCTTGCCACATATAAAATGCCACACAGTT TCACAAAGCAACCGACACCCCTTGATTAACCCACCACAACCACAACCACAACCACAACCTCCCTCTCTCTCTCTCTAATC TCTATTACTTAGCTAGCTACCTGCTAAAACCAACATTTCCACTCTCTGTTCTGTTCTGTTCTGTTCCTCCTAGTACTACT ACACAAAAACACAGGTAGCATTCTTCACTCTGTCTGGTTTCTCTTATTGTCTGAATAAACCCTCAAATGGCCATGGATGG CGGCGGCATCTATGGCGGCACCACCATCTTCTACACTTCCCTCCTCCTCTTCTCAATCTTCTCCATCTCATCACAGTCTT CTCAAATTCCGGGTTCGGGTCCGGGTCAAATAAACTCCAACTCCATCTTGGTAGCACTTCTGGACTCACATTACACTGAG CTAGCAGAGCTCGTAGAGAAAGCAATGCTTCTTCAAACCTTAGAACAAACAGTGGGCTCTCACAACATCACCATCTTCGC TCCCAAAAACGAAGCTCTAGAGCGAGATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCAGAAACCTTCACTCTC TCCAGACACTTCTCAAGTCCCACATCATCCCCATGAGAATCAGTGGATCCGAAAACGCTCCCGGGTCGACCCACCACCGC ACACTCGCCGGACACCACCACCTGAGATTGGAGACAAACGGAACGGGTCGGCAGTGTTGCGTTGATGGCTCCCGGATCCT CCACCCGGACGCGATTACCCGACCCGACGGTGTCATCCACGGGATCGAGCGTTTACTCATCCCCCGCTCCGTCCAAGACG ACTTCAACCGCCGCCGGAGCCTCACCTCAATCGCCGCCGTGAAGCCAGAGTCCGCGCCGGTGGTTGACCCGAGAACCCAC CGGTTAAAGAAACAACCACCACCGCAGAAACCAGGTTCATCCCCTGTTTTACCGATCTACGACGCAATGGCTCCGGGTCC TTCCCTCGCTCCGGCGCCAGCACCAGGCCCCGGCGGGCCCCACCACCACTTCAACGGCGAGGCCCAGGTGAAGGACTTCA TCCACACGCTTCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTCAACCTCACCTCCTTAGCCACCGAAATG GGTCGGTTGGTTTCCGAAGGCTACGTTCTCACCGTCCTCGCTCCCAACGATGAAGCCATGGCGAAACTGACGACGGAGCA GTTGAGTGAACCCGGTGCGCCGGAGCAGATCATGTACTACCATTTGATCCCGGAGTATCAGACGGAGGAGAGTATGTACA ATGCGGTTCGGAGATTTGGGAAGGTGAGGTATGATACGCTCCGGCTACCGCATAAGGTGGTGGCGCAGGAGGCTGATGGG TCGGTGAAATTCGGGCACGGTGATGGGTCGGCTTATTTGTTCGACCCGGATATCTTCACCGATGGAAGGATCTCAGTGCA AGGGATTGATGGGGTGTTGTTACCTCCACAAGAACAAGATGAAGAAGAAGATGAGAAGGAGAAACCGGTGACCCGTACCC GTTCGGGTCAACCCGCTAAGGTTGTTGTCAAGCAAAGAAGAGGTGAGTTGTTGCTTTTGATTGCTTTCACTTTCACTCAC TTTAATTATTCAATGTTTTATTTTTGATAATTGAATATTAGTAATTAGTCATGGAAATTAGTGTTGTCAATCCATCAAAT TGGAGAAAATTACAGATAAAAAATGCAGCTTACACATAATTGAGGTTGCAAATAGTTGAAAAAACCCTTAATGTTGTGGC TGAATTTATGGTTATGGAAATTGTGGTTTTTTCAATTTTAACTTTTTTAGGAAAAACCAATGCGGGTATTATTGGCTTTA GTTTTTTCTTTTTAAAATATCATATATTTGTGAAAAGTGTGGTTTTTCAACAAATAATGTATCGGTCTAGTGGTAATAGT GGTAAGCAGGTTAGATCCGAGTAAGGGTGACGATACAACTTTGAACCCTGGGAATGTCATCTGTTAGGACTTAGGAGGGA TTGCCACAGTTTTCCGAACGAGTTTAAAGACAAAAAAAAAGTGTGGTTTTCCGATGATTAATGTGTTATTATGTTTTCAA TGAATAATTTATTACTATATTTCTGCTGGCTTTTGTTGTATTTGGGTTGTTGTTATTTGTTTGGGTGTTTTTAAAGTCAA GATAGGAAAAAAAAGGTGATGATGGTGTGATTGGATGAAAGTGAAACTTTCTTTTCTTTTAGTTTACTTTAAGTGGAGGA TTTATTCTGTGCCTGGACTTGTTCTGCTTTTGGTAATTTGGTTAGGTTCTGCAATTATTGAGCTTGTTTTCTTTCTTTTG ATTTGGACAATCATGAACCAAATAAAATAAATTGAGATTTGGACAACCAAGCACGTGTTTGTTCTTGTAGCGTTATGCTT GGGTTGAGTTTGGAAGTTGAAATTACAATGAGAAGAGTTGAAAGTATTAAATGTGAATTTGGCTTCTTAGGAGAGGAACT GACAGAAAGAATAGTCTAAAAGTAAGTGAGGGCTATATTTAAAGTAATCCCTTGAATAGGGAGTTTGGAATATGTGAGAA AGTTATGCACTAATAGTAATAATAATAATAATAGAGGACTTGAGTTGTGGAGGTTGAAGTATTTGTTATCTTGCTTTCTG ATTTGTGAATGTTAGGTACTAATGATCATTCATTAGAAAAGAGACAGAATTCCTGTAGAAAATAGATTTCTTAAGGTTTA AGAAAATATTCTAAAACTTTAAAAAGTAAAGGTCTTAACTTTTCGTTGATCATTGTTGCAAGGTAACTGCTTAAGCTTTA AGCATATTGAATGGAACTAAATATCAAAATTGATAATTTCATAATACTTTAATGTGGTGACTAAATTTCGATTGGTATTT TCATTTCGTGCTACTTTGTGACATATTAATTCAAAATCACTTTGCATATATTCTTATGAAACTTAAGTTTGAATGGATGG ATGGCAGGAAAATTACTAGAAGCAACATGCTGGATGCTTGGAACAGTTGGACAACATTCTAGATTCACCTCTTGTCAATA AAAAGGTAGCCCTCATTTGGATGCTAGCAAGTCTCATTAAAACAAAAGGTTAGAACTTCACTTCTCATTCTCGCTCATAA CTAGCTAATTAATAGCATATTGTTAACCTGAGTCTTGAGTAAATGATTAAGTCCGTGTATGGGTCAGTGTTGTCACAATT GATTTTGGCAAGATTGATTATAGTAAAAGTGAAATGATTTATGTTGGGATACATTTAAGAAAAAATGGTTTTTGTAGGGT AATGTTGTAAAATCTCAGAATTTGATTGTATTCAACTCAGAAGCTACTCTCTCTAACTTCTAACAGATTTGATTGAGACT GAATTCTATATTTGATTCTGAGGTTTTCCAACAAAACATGTTCGGAAATTCTTCACATAATTGATTTTGAGAATCAATTC TCCAAAATGACTCACATTTATCTATATTTGATTCTGAGGGTTTTCCAACAGGGAACCAAACATGTTTGGAAATCCTTCTA TACTTGATTCTAGAGTCATAATCAAATATGTGGAGAAGCTTTTGGATAGAAAAGAGAAGCGAAGCGGATCCAAACATGCT ATAAATATCAAGAATATTTTCCTCTTCTGGGCATCATAATTTTAATTTGCTGTTGATGAAATTAGATGCTCAAAGCACAA ATATTCATATCATCCGGCCTTGGACTTGGTGGTGTTCAATCACTAGGTATCAAGTGGGTGTTCTTCCTCTCCCTTCCCCA TTAAAAAATAACTTTTTTTGTCTCTCTTTGGCATATGAAGCTTCTTATACTCACTCTCATTCTTAATTATTTTGGTTAGT GGCAGTGGGTGTTGGGGTTAATGCATTTTATGGGTATAATATTTTCCTACTTCCTAAAGTTGACCTCTAGCTTTCTTAAT TTTCTTAACATGGTTTATTGACCAATGATTTCACATGCATTTATGCAGATGCACAGAAAATTGCAAAAATATGTAAAAAG TCAATGGAATATGAAGGCCAGGTTACTTGAAATGGTTTTACAGCAGCTGCAATGGGTTTGGTTTTGCCACTTTTTTTATG TTTTCTTTTCTTTTCTTTCTCCCTCTTGATTTTCACCTTGTGGATTCTGGTCCTAGATGAGAGAACAAAGCTTCCCAAGT CTCCTCTTGATACAATATATATAATGCATATATATATGATGTATGTAATTTAGATTCAATTAGTACTGCTGCTGCTGCTC TATAATTCTATAGGAGGGTGTGTTGGTGGGATGAGAAGGTTGTGTAATAAGAAGGCATATGTAATCTGTGCCCGATTCAG TAAGTAGTTTTTACTCAAGAAATGGAAATGGAAACACAGTAATAAAATGATTCTTTACTGTAATATTGATATTTTATGGC AGCCACTTTATCTCTCTCTCTCTCTCTACCCTTTCTCCATTCCCTTGTTATCTCTTAATGTTTGTATTACTATAATTGCC ACTCAGCCAAAAAAATTATAATTTAGTCAATATTATAGTATGTTCTGATAAAACTTATTTTTTCTCATAATCAATTCAGA AATCTAGAAAAAATATACAACTTTTCAAAAGCTTTATTATAGCTTTAGAATCAATTGTAAAAGGATTTTCAAATATGTCC TTAAAGAATTGTGTTTTGTTCAGTTTATAATCTATGGCCCTCTTTCTCATAGGAATAGTGCTAGTTGCATCATCTTTGGT GCACTGCGGACCTCTCCAACCAATTATTATAACAGACCAAAAGGAAACTTAACTTTAACTATTTATGTTAAATTTGTGTT CTCTTCGTTACTATTTTCAATGAATATGTTACACATGCATTTGGGTTAGGAGTCTAGTTAGCTATATAAAGTAGTATACA CTATGTAATTGGTATGTTGTTGAATGATGTGTCCTCTGTTTCCTCTATTCTCTATGTTCTCCTTCCCTTTTCCCTCTTTC TAGTTCTTGTCCTATCAGAATCAATTGTTCACAACAATCCTTGTGATTAGTTCACAAATTATAGTTCAAAAAAAAGTTCA CA
CDS sequence (LotjaGi3g1v0470100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGATGGCGGCGGCATCTATGGCGGCACCACCATCTTCTACACTTCCCTCCTCCTCTTCTCAATCTTCTCCAT CTCATCACAGTCTTCTCAAATTCCGGGTTCGGGTCCGGGTCAAATAAACTCCAACTCCATCTTGGTAGCACTTCTGGACT CACATTACACTGAGCTAGCAGAGCTCGTAGAGAAAGCAATGCTTCTTCAAACCTTAGAACAAACAGTGGGCTCTCACAAC ATCACCATCTTCGCTCCCAAAAACGAAGCTCTAGAGCGAGATCTCGACCCTGATTTCAAGCGCTTCCTCCTCGAACCCAG AAACCTTCACTCTCTCCAGACACTTCTCAAGTCCCACATCATCCCCATGAGAATCAGTGGATCCGAAAACGCTCCCGGGT CGACCCACCACCGCACACTCGCCGGACACCACCACCTGAGATTGGAGACAAACGGAACGGGTCGGCAGTGTTGCGTTGAT GGCTCCCGGATCCTCCACCCGGACGCGATTACCCGACCCGACGGTGTCATCCACGGGATCGAGCGTTTACTCATCCCCCG CTCCGTCCAAGACGACTTCAACCGCCGCCGGAGCCTCACCTCAATCGCCGCCGTGAAGCCAGAGTCCGCGCCGGTGGTTG ACCCGAGAACCCACCGGTTAAAGAAACAACCACCACCGCAGAAACCAGGTTCATCCCCTGTTTTACCGATCTACGACGCA ATGGCTCCGGGTCCTTCCCTCGCTCCGGCGCCAGCACCAGGCCCCGGCGGGCCCCACCACCACTTCAACGGCGAGGCCCA GGTGAAGGACTTCATCCACACGCTTCTCCACTACGGCGGGTACAACGAGATGGCGGACATTCTCGTCAACCTCACCTCCT TAGCCACCGAAATGGGTCGGTTGGTTTCCGAAGGCTACGTTCTCACCGTCCTCGCTCCCAACGATGAAGCCATGGCGAAA CTGACGACGGAGCAGTTGAGTGAACCCGGTGCGCCGGAGCAGATCATGTACTACCATTTGATCCCGGAGTATCAGACGGA GGAGAGTATGTACAATGCGGTTCGGAGATTTGGGAAGGTGAGGTATGATACGCTCCGGCTACCGCATAAGGTGGTGGCGC AGGAGGCTGATGGGTCGGTGAAATTCGGGCACGGTGATGGGTCGGCTTATTTGTTCGACCCGGATATCTTCACCGATGGA AGGATCTCAGTGCAAGGGATTGATGGGGTGTTGTTACCTCCACAAGAACAAGATGAAGAAGAAGATGAGAAGGAGAAACC GGTGACCCGTACCCGTTCGGGTCAACCCGCTAAGGTTGTTGTCAAGCAAAGAAGAGGAAAATTACTAGAAGCAACATGCT GGATGCTTGGAACAGTTGGACAACATTCTAGATTCACCTCTTGTCAATAA
Protein sequence (LotjaGi3g1v0470100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMDGGGIYGGTTIFYTSLLLFSIFSISSQSSQIPGSGPGQINSNSILVALLDSHYTELAELVEKAMLLQTLEQTVGSHN ITIFAPKNEALERDLDPDFKRFLLEPRNLHSLQTLLKSHIIPMRISGSENAPGSTHHRTLAGHHHLRLETNGTGRQCCVD GSRILHPDAITRPDGVIHGIERLLIPRSVQDDFNRRRSLTSIAAVKPESAPVVDPRTHRLKKQPPPQKPGSSPVLPIYDA MAPGPSLAPAPAPGPGGPHHHFNGEAQVKDFIHTLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAK LTTEQLSEPGAPEQIMYYHLIPEYQTEESMYNAVRRFGKVRYDTLRLPHKVVAQEADGSVKFGHGDGSAYLFDPDIFTDG RISVQGIDGVLLPPQEQDEEEDEKEKPVTRTRSGQPAKVVVKQRRGKLLEATCWMLGTVGQHSRFTSCQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 7 | 27 | 21 | - | – | |
| PANTHER | 8 | 469 | 462 | 1.3E-265 | – | |
| PANTHER | 8 | 469 | 462 | 1.3E-265 | – | |
| Phobius | 28 | 469 | 442 | - | – | |
| SUPERFAMILY | 35 | 187 | 153 | 3.66E-20 | ||
| ProSiteProfiles | 43 | 184 | 142 | 16.144 | ||
| Gene3D | 45 | 187 | 143 | 8.2E-18 | ||
| Pfam | 55 | 186 | 132 | 3.6E-20 | ||
| SMART | 82 | 187 | 106 | 2.0E-13 | ||
| MobiDBLite | 207 | 259 | 53 | - | – | |
| SUPERFAMILY | 247 | 414 | 168 | 3.79E-19 | ||
| ProSiteProfiles | 268 | 396 | 129 | 10.359 | ||
| Gene3D | 281 | 417 | 137 | 2.0E-7 | ||
| Pfam | 293 | 413 | 121 | 2.6E-7 | ||
| SMART | 309 | 414 | 106 | 1.3E-15 | ||
| MobiDBLite | 411 | 437 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0470100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…