Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470200 |
| Transcript ID | LotjaGi3g1v0470200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Strictosidine synthase family protein; TAIR: AT1G08470.1 strictosidine synthase-like 3; Swiss-Prot: sp|Q8VWF6|SSL3_ARATH Protein STRICTOSIDINE SYNTHASE-LIKE 3; TrEMBL-Plants: tr|A0A1J7HPT8|A0A1J7HPT8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0470200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88578697..88583696) extracted from Lotus japonicus Gifu genome v1.2.
GACCTTATCTATTTATATGACACTACTAACTCTAGTATTACAGGATAAAATAATCTAAATTCATAAGATAAGATAGAATC TTATCTATACTCATAAGATAAGATAGAGTCCCTTTAAATCCCTATCACAATCTCCTTTTATGAAATTCAAATAACTGATA AGATAACGACTTAATCCCAACCGTTATTAAAGAGTAGACGGTTGACCATAATTTGGTGATGATGCAATCAACAAGTTCCC CTTCAGTTGGTTGATGCAAGACGATGCACTTGACCTCAGCCTCAGCCTTATTCTACTCAACGTGTGCTCTTATGCTGAGT GAGTATGACTCTTGAGTCTTGAGTCTCCTGCGAAACGGGTAGATACTAGATAACACACGCTTTATGTCTCACCTACCCAA CTTTCTAAGTTGATTTCTTTATTTTTTGCAGCTTTGGAAATAACGTTGTAAGTTGAATATAATGCAACGAAACAAATCAA ACGACCGCACGTTCAGTCTTCCTCTTGTAACAAAAAAAAAACAAAGACCACAAATTCTGACATTCTTCATTACTATAATA ACTACCACAACAACAACGAGCCTAACTGGTAAGTGGTAACTACTTTCAGCTTACCTTATATTTCGACCTCAACAACATTA TTCACTTCACTTCCGTGTTTGATGATGACTCTGGCTCGAGGCTTCGCCATTGTCTTCCTCTTGTTCGCTCTATACTGTGG TCTGGACCCTTTTCAGCACAGTCCCATTGCCAGCTTCCCTGATTTTGAGGCCAAGAAGGTTGTCATGCCGCCATGGTCTG AGGTTCCAACAAACCAGGACAAGGAGAATTTGTTGCAGAATTCGGAGGTTAAGTTTCTGAACCAAGTGCAGGGACCTGAG AGCATTGCCTTCGACCCTCTTGGTCGTGGCCCTTATACTGGTCTGGCTGATGGAAGAATTGTGTTCTGGAATGGACAGTC TTGGGTTGACTTTGCTTACACCTCCCCTAACAGGTCAATGTTCTATTCTCTTCCTTTAAATGCAAATTACATCATTTTTT TATTTCAATTATTGCTGTGTTGTTACAATTCTTGAGTGATTGCTGATAGGATTAGGATTAGGAATAGGAATTCAACTATT AAATAGAAAGTTGGGGTTTGATGAAAAAAGGGCAAATTGCACTGACACCCCTGAGGTTTATCATTCTTGCACTGACATCG TCTCTATTATTTAACAAGACACTAACAACCCTTATTTTATTGCGAACATTGTACTAACCTTCCCTGAGGTTTATCATTAT TGCATTGACCTCCCCTCGGATTTATCATTATAACACTCTCTACCCTTCTATTCTAAATGATATATGGTAGGGTTTAATAA TTTGAACATGTGTTGAGACAAACCGTGTAAGCATCAGAGTCAATAGTTAGGGATAAAAGCAGAACAAGGAAAACTACAGG TATGACCATTATAAGAGATTTGCAAGTAAATGATGTATATATGGACTTAATACTTGAAAGAGTATTATGTGGTTGTTTGA TTCATGTAGTGAGCCTCTTCTAATTGGGAAAGGCTTCGTTATTGTCGCTGTTGTATTTTATGGAGATGGACACATATGTT TTGTACTTATTTGTTGTTAAAAATGCTGCGTGCAGGTAAAAATTGAGGCTTGTTATAGACTGTACATAGTTATTGGCTGT GTCTAAGAAATAAAAAGTAAAAGATATTCTATTCATACCATCTTTCTAGTCTCTACATTTATAGACCATCACTACAATCA GGGAATGCAGCTGTGCAGGAAGTGCAATCTAATCAGTAGTCATGTAGGTTGGTAAGAATTCATTGAACTTGGGGAGAGTT CTTGGGATCTTAACCAAAAATTACTTTTGAGGCATTTCATTAGTTTCAATTAGAAATTATCTGGTGAGTGGTGACTAATT CTTTGAGCAAATGGTAAGATGTTAACAGAAGTTACAGAACTATGAATACCAGCAATATTCTTCAAGTCCCTATTTGAAAT GTTGACCCTGATTCTCCACTCTAAACTTCATATTCTGTCTGCCATTGTGAGATGCTGCTTCCTTGTGATATGACTAACAG ACCTTATACATTATCGTCTCGTCCTTTCAAAAGGTTTGAGCATAAATCATTAAAGACGGTTTCGTGGCTACTGAATTCAA AATTTTGGACCAATAGAATTGTTACTAAATGTTACTTTTTTCTTCATTTATGATGTGGCTATATATGTTTGCTATTTCTT GTAATTAAATAGTAATCATTCTTCATCTGTCACTATTATAAGTACAGGTCAGAACTATGTAATCCTTTAGCATCTGCGAC ACCATTTAGTTATATGAGGACTGAGCATATCTGTGGAAGGCCTTTGGGACTCAGATTTGACAAGAAAACAGGTGATCTGT ACATTGCAGATGCATATTTTGGGCTGCTGAAGGTAGGGCCTGAGGGTGGTTTAGCAACATCTCTTGTAACTGAGGTTGAA GGGGTGCCACTGAGGTTTACTAACGATGTTGACGTCGATACAGAAGGGAATGTTTATTTTACAGAGAGCAGTGCTATTTA TCAGAGAAGGTATAACTTTGTCTTTAATTTTTAGATGCCAAGATTGCATTATACAATGTACCACAACTGAGAAAACTGAT TATATTGGCATACATCAAACTATAAAAGAGAGGGACAATGTATTACTATTATATAATACTATATTAAAGTTGTGACATCT TATGTTTCTTTCCATAACACAGACAATAAAGAAATTACATGCTGTTGTTTGTGCTACTAATACAATTCTACAACTTGAGA AGTTGCTTCAATGCTCTGAGACTGGATAAGCAAGTAGCAATAATAATTGAGTTTTTTATGTCATTTTTGTATTGGTAGTT AGAGCAAGAGTGTAACAAAAAAAGAGTAACACACTGAGAAATTTGTGGGAACAGTATGCAAGGGACCTCATAACCTTTAG ATGGCACCTGACCTGCATGTTAGGTTTGTTGGAAGGACTTCTGTTGTGCAAGATGTATTATTGTGGACAATGGGTCAGCT GGGATGAGTATGAGCATTTAGTATTGAGGGTGCGTTTGGCAGATGTTTGGTTAAGCATTTATGTATTAGCTTACTTAAGC TTATATTATTGCATAAATACTTATGTAGGTGTTTGGTTAAGCTTGTAAAAATAACTCATCACATACCTACAATCTCTTTT TAGTTTATTTTGATGAGCTTCTCATATTGACTTATAAATAAGTGTTTCTACCTACATATAGCTAAAATCATGAGCTTATT TATATAATTTTCTCAAATAAGCTAATAAGTTAACGCTTATATGATAAGTGCTTATCGATATAAGTGCTTAATTAAACTGT CCCATTGCACCCTAACACCTGTCTCCTCTTTGCTTAAGCAAGCCTTTTGTTTGCATGGGATTCTTTGGTTGTGAGGGTGT TAAGCCCATTGAGCATCCCAACAGGATGCAGCTACTCATGTTTTATGTCCTAAAGATCTGAAACTTGGAATTCTGAAATA CTGATATTCTGTTGTTTCATCTATCGTGGGTTGGTTCTAACATAATTTATATACAGGAACTTCGTTCAGCTGGTACTTTC AGGGGACGACACTGGCAAGGTTGTGAAATATGATCCTACCACTAAGGAAACCACTGTTCTTCTGAGGAACATTCAATTCC CAAATGGCATTTCCTTAAGCAAGGATGGTTCCTTCTTTGTCTTCTGTGAAGGGCTTGTTGGCAGGTGAATCTAACAATCA CATAGCAGCTTTCCACTTTTTATATATATGCTAGAGGCCCTTTGAGGAGAAATTCTTAGTGATCTTAAAGGAAGAGAAAT ATCTTGTTTTGTGCTGTTGAAGGTGTTGACCACTTGACTATATCAATGATATAGTTGAAATGGTACGCGTATGATATGAC ACATAGCAAGAGATTTCTCTTGCTCCAGAGGCAGCTAAGAGTTTCTCCCCTTTGTGTAGTGCCTGTATCTTAGCATGCGT TAAGTTAGAGTCTGCATAAAGATACCATTTTCACTGTTGTTATTTACTCATAGTCGATATTGACAGATCTTTCTTCATTG CAAATTGTTGAAATTCACTTTATTGGTTGTTCTTGGCTGATACCAATTAAGCAACACTAGCAGTAAATTTTTCTTCTTTA GCAAACAGTCTTTGTCTAAACTCATTTCAATGTAAGAGTTACCCTTTTATTCATTTCTTATTCTGTAGGCTACGTAAATA CTGGCTGAAAGGAGAGAAGGCTGGAACTTCAGAGATCTTAGCCGTCATACCTGGAGCTCCTGACAATGTGAGAGTCAATG AAAATGGTGATTTTTGGGTGGCTGTTCATTGTAGAAGGAGCTCGTACGCATACCTCGGCGGTCTCTATCCAAAGATAAGG AAAGCCATACTCAAGCTTCCTATATCAACAAAGTATCAATACCTGCTTCAAATAGGAGGGTGGCAACATGCGGCGATTGT CAAGTATAGCCCTGAAGGTAAAGTCTTGCAGATATTGGAGGATAGTCAGGGGAAAGTGGTTAGAGCTGTGAGTGAAGTGG AGGAGAAGGATGGTAAACTTTGGATAGGAAGTGTTCTCATGCCTTTTATTGCTGTTTATAACTTGGAATGAAGCAGATTA GATTCTTCTCCCACCAAGCTCTTTTGAAATCACAGTTGAAGAAGTTGATTGATGCTTCAGCATTGTCAGTGATGGTCATG GACATTCAATTTCCAGTTGAAACCCTGAGTTGATTTTTGCTTCCACATTGCCATTGCTAAACGCTGGTGGTGCTCATCAA TCATCATTTTTTTAGTTTTTACATAGCATTAAGAGTGAACACAATAAGGTGTTGCTTGCTTGACGAAAATACTTTTTAAT TTAAATTGATTTCTAAAGTAGTGAAATTGTGAACAAATTGACATGAACTTCTAACCAAGTTGATAATATTGAAAATTAAA AATTTCGAGAAGTAAAATAGTATAAATGATACTCTTAAAA
CDS sequence (LotjaGi3g1v0470200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGACTCTGGCTCGAGGCTTCGCCATTGTCTTCCTCTTGTTCGCTCTATACTGTGGTCTGGACCCTTTTCAGCACAG TCCCATTGCCAGCTTCCCTGATTTTGAGGCCAAGAAGGTTGTCATGCCGCCATGGTCTGAGGTTCCAACAAACCAGGACA AGGAGAATTTGTTGCAGAATTCGGAGGTTAAGTTTCTGAACCAAGTGCAGGGACCTGAGAGCATTGCCTTCGACCCTCTT GGTCGTGGCCCTTATACTGGTCTGGCTGATGGAAGAATTGTGTTCTGGAATGGACAGTCTTGGGTTGACTTTGCTTACAC CTCCCCTAACAGGTCAGAACTATGTAATCCTTTAGCATCTGCGACACCATTTAGTTATATGAGGACTGAGCATATCTGTG GAAGGCCTTTGGGACTCAGATTTGACAAGAAAACAGGTGATCTGTACATTGCAGATGCATATTTTGGGCTGCTGAAGGTA GGGCCTGAGGGTGGTTTAGCAACATCTCTTGTAACTGAGGTTGAAGGGGTGCCACTGAGGTTTACTAACGATGTTGACGT CGATACAGAAGGGAATGTTTATTTTACAGAGAGCAGTGCTATTTATCAGAGAAGGAACTTCGTTCAGCTGGTACTTTCAG GGGACGACACTGGCAAGGTTGTGAAATATGATCCTACCACTAAGGAAACCACTGTTCTTCTGAGGAACATTCAATTCCCA AATGGCATTTCCTTAAGCAAGGATGGTTCCTTCTTTGTCTTCTGTGAAGGGCTTGTTGGCAGGCTACGTAAATACTGGCT GAAAGGAGAGAAGGCTGGAACTTCAGAGATCTTAGCCGTCATACCTGGAGCTCCTGACAATGTGAGAGTCAATGAAAATG GTGATTTTTGGGTGGCTGTTCATTGTAGAAGGAGCTCGTACGCATACCTCGGCGGTCTCTATCCAAAGATAAGGAAAGCC ATACTCAAGCTTCCTATATCAACAAAGTATCAATACCTGCTTCAAATAGGAGGGTGGCAACATGCGGCGATTGTCAAGTA TAGCCCTGAAGGTAAAGTCTTGCAGATATTGGAGGATAGTCAGGGGAAAGTGGTTAGAGCTGTGAGTGAAGTGGAGGAGA AGGATGGTAAACTTTGGATAGGAAGTGTTCTCATGCCTTTTATTGCTGTTTATAACTTGGAATGA
Protein sequence (LotjaGi3g1v0470200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMTLARGFAIVFLLFALYCGLDPFQHSPIASFPDFEAKKVVMPPWSEVPTNQDKENLLQNSEVKFLNQVQGPESIAFDPL GRGPYTGLADGRIVFWNGQSWVDFAYTSPNRSELCNPLASATPFSYMRTEHICGRPLGLRFDKKTGDLYIADAYFGLLKV GPEGGLATSLVTEVEGVPLRFTNDVDVDTEGNVYFTESSAIYQRRNFVQLVLSGDDTGKVVKYDPTTKETTVLLRNIQFP NGISLSKDGSFFVFCEGLVGRLRKYWLKGEKAGTSEILAVIPGAPDNVRVNENGDFWVAVHCRRSSYAYLGGLYPKIRKA ILKLPISTKYQYLLQIGGWQHAAIVKYSPEGKVLQILEDSQGKVVRAVSEVEEKDGKLWIGSVLMPFIAVYNLE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 3 | 393 | 391 | 1.6E-221 | – | |
| PANTHER | 3 | 393 | 391 | 1.6E-221 | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| Phobius | 7 | 17 | 11 | - | – | |
| Phobius | 18 | 21 | 4 | - | – | |
| Phobius | 22 | 394 | 373 | - | – | |
| SUPERFAMILY | 49 | 393 | 345 | 3.6E-53 | – | |
| Gene3D | 56 | 394 | 339 | 1.7E-115 | ||
| Pfam | 183 | 270 | 88 | 4.7E-30 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Strictosidine synthase activity | Catalysis of the reaction: 3alpha(S)-strictosidine + H(2)O = secologanin + tryptamine. |
Expression pattern of LotjaGi3g1v0470200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…