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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0470400 |
| Transcript ID | LotjaGi3g1v0470400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | YABBY transcription factor; TAIR: AT1G08465.1 Plant-specific transcription factor YABBY family protein; Swiss-Prot: sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2; TrEMBL-Plants: tr|A0A151RB10|A0A151RB10_CAJCA Putative axial regulator YABBY 2; Found in the gene: LotjaGi3g1v0470400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:88589911..88595719) extracted from Lotus japonicus Gifu genome v1.2.
TTTAAAGATGATGGGTCACTCACTCACTCCCACCCACTCATTCTCACAATCATAACACATCTTCACACACCCTTCCCCAC TCTCTGCCCATTGTGTCTTCCACACACGCGCACTTACACACAAATCATTCTTCACATTTCCACATAATCCATCTTTTCTA TGTAGTATGTACTAAAATGAACAAAAGCCACTTACCCCACTCTGCTTTTCCCGACCAGAATAGTCTCATCATAGTCTTCT TAATTTGAGAGTTTGTATTCACACAAACTTTCTTTACAAAAATAATTCATGTTATTTTCAAGACACCGCAACTCCTATAA TTTGTGGTGGTTAAACTGCAAGTGTGGTGGTACAGTGAAGTGTGAATGAATCATTACTCTCTCCTATGTAAAGCAATGAT CATGTTAAGTTATCTTTGAGCCAAGTGATCGATTCTCTCTCCCCCTCGTGAAGTGCCTATAAATCCACTGCTAAACAGGC TCAAAGGACAGGCACATTTAGAGAAAAAAATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAAC TTCTGCAACACCATTCTAGCGGTACAGTTTCTCAATTCTCTCTCTTTCTTCTCTCTCATTTATTTTCTTTCCATTTTCTT CAAAGCTTTCCACTGTGCCACGCGTTTCATGAGCTAATTTGGTAACATGGGTAGCCCTGTAACTTCTCTCATCCATCCAG ATCATGAGATGAGAGCAAAGAAATGAATAGTTTAAAGGAAAAGCTGTTCTGGGTTTTCCATGAAAAAAGTGAAAATTCAG CTCAGACCTAATCAGAATGCTTGTTTGTGTATAAATGGATGCAAACCAAAATGTTGGAATACCCCAATTTAATGTAAGGG TAATTATAAGTTTCCCTATAGGAATACTAGAAATCCATCACTGAAGTGAATTTCTTAACTGGCTTGTACTTTAAACCAAG AATTCAACTGATCTTATCTTATATTTTATGTAGCTCTAGTAGCTAGTAAGAGAAAAGATAAAGTAAATTAAGATCCAACA CAATTGTTAACTTTCAGTGAACAAGATAGACATAGGCTTAATTTTAGAGAAACAAAGGAAATCCAGTGAGCCAGAAAGAA GCAATTTTAAGATGCTTATGGACAATTGCATACACAGTACATAGCCACCAATTTGAGGAATCCTGGTCCATAATTAGGGT TATTCCCAGGTATTAGGGTTCCCCTTTTCTTTTCTTTAATTTTAAAGAATCTTCTGAAGAATATATAGCATCACATATGG TATCAAATGCTATATTCTTTACAAAGTCTGGCTATTTTAATTATCAGTTTATTTTTTTGCTTTATCTAAATGTGTGTGAG CTGATATGTTTGGATATCCATTGACGCTATAACAGCGTTCACATCCACTTCAAGTTTTTTTTTTAAGTGAATGAATTTTT TCTTATAATTGAGATGACAGTTCGTTCACGTTACACTCTACTAGTTTGAAATCCATGTGAAGGCACTCTGTGTATACATT TTCTCCCTCCATAATTTGTGATTATGATTCCTTCAATTCCTTAAATGCATTACTGTGATGAGTGTGAATGAAGTTGGACA TTTGTGTTCATCATGATTCGCCAGTGAAGCATCATCTTTTATGATCGTGTAGTCAAGTTTTTTCACAATTTCAGGCATGC TACCTCCATTAAGTACAAAGCCACTGTACCCTCTTTCTTTCTACAACTACTTGTCTGTTACTGCCACAAGAGATTCATTT CACATGATGTTCTCTCTCTCTCTCACACATTTTCATTTCTAATCTTTCTCTCCTTTCATCATCGTTGAATTTACCCCTTT TGAGAAAGCATTCTTTTTCTTTATCTCCTCCTCTTGAAGATCATAATCTGCTTCTTTAATTAAGGAGTGTTTCATTTCAA GGCCTTGATGGTTTCTGTTCCAGTCAAGTCATTTTCACCTCTCTCTCTCTCTCTTTCCTTGACACTCCAATTTCTATCTT TTATCATCTTGCCTTGCAGTGTGTCAGCAAAAAGTGATATAGTACTAAATTTTAAATCACCCTTGTCAGGTTCTGAGCTT GCTGTTAACAGCTTAAGAGTATTGGACAGTGGACACACACCATAAAAGTAGACCTCTCAGGATGAATGAGCAAAGATTAC TGAACTCACTTCCCTTCCCTCTCTCTACCCTATTTATCATCTTCAACCTCTCTTTCTTCGTCCAACTATTAGTATGTTTA TATTAGCTTCTTTTTCCTCAAAATCAATTATGTCATCAAGAAGCTACATAGAGAAGCTTCCCCCACAATTGATTTTGCCT TAAGAATCAATAGTAGAAGAATTTCCAAAAATACGCTATATACATTTTGTTTTTTCTTGGCTCCATTGCCTTTCTTGGGA ATGTCAAGCCTCATGTCCCCAATGTAAATATATTAACTTATTTTTGACAATGTGAAGTTCCATCTTTCAGCTCTTGGTGC TGGTCATCAAAGTATATAGTACATGAAAGTTAATGCAGCTTTGAGTTATTGGTTTTAGAATGGTCAAATGTGTGTGTGTT TAACTGGATTGTAGTGAAGTTTTTTAGTGTTTGAAAATGACAGTTCTCACTGGCTAATTTCTAGCTAGCTTGTGAAATTA TAAGTGATGTTCTTGAAATATTGAAAATGTCTATTTTGTCAGGTTAGTGTTCCACACAGCACTTTGCTAACCATAGTGAC TGTTAGATGTGGTCATTGTTCCAATTTGCTATCAGTTAACTTGGGAGCATTTCAAGCATTTCCTCCTCAAGACCCTCAGG TATATATACATATATATATTCTCACTTTTTTACTTCCTGCCCTCTATTTCTAACTTTCAACCTGTTTGGATCAGCTTCTC TTTCATAAGAGTCAATTCTAAAACCCATTCTGGCTTCAGAATCACTTGCATAAATGTTTCCAAACATCTACATTGTGACT TTGTTTTTTAAAGAATAAAAAAATTAAACTTTCCTTACTTGTATTGCTTCTTTAATTTATTAATTTTTCTCTTTTAATAT GTTGCTAATTAAGCCACAGAAACAGCACCTGAGCTTTGAAGAACCAAGCAACAAAGATCTGGGATCATCTTCAAAATGTC ACAAAACAGCAGCATTTGAACCAGTGGAGCGAGAACAACCTAGGATTCCTCCCATTCGTCGTGAGTCACACTCTATTCCC TCCTTTTTAGCTTTTGGTATCAAAAGTTGGACTTTGTATTACTCTAAATTTGAATTAACAAACAAGAACCTAGCACACTC AGAATTTTTTAGGCCACTTTGTTAAAAATGAGTTTCTTTTAAAAGGGTCAGTGTGCATTTCAGTATCAAGTGGTTTTATT GGTACAATTTGGGCATCTCATTTTCTCCACCAATTTTTATGGCCCCCTCCAAGATGGTGACCTTACACAACAAAAATTGA CCCATCCTTAATTCATTGCAGCTGCAATGTTAAGCCCTAGATATAAGTGTGTATCTTATGCAGTTATATCCATAGGTACT AACTTCATTTTACAGTCACAGGTTCCACTCACCATTACATTTACAGCTCATGGTAATGAATATTGGTTATAGTCATCACC TAGCAGTGGTATTTCAGTTACCTAGAGGCGTGGTTGGATTATTTACAATTTTTTTATCTACTGTTTTTAGTTTTAAAATA CAAATTAACTTGGCACATTATTTTCTGTTTTCAATTTTTTTTTATAGAAAATAGAGAAAACAATAAAACAATTATATTTA CTATATATCTCTTAACTTTTTTTTTGATAAGCATATATCTTTTAACTAAACTTTGAAAAAGAAAACAAACTGAAAATATG ATTACAGTTTCATAATTTAATTAAAAATAGAAAATGAAAATAAATGAGCAGCTGGATGAATTTTAATACTGAAAGACTAC AATATTGATGACAAAATTGTTTGAGAAGAAACAAAGAAATGCAAAGCCATATAGGAAAGCAAATAAATTAAATTAAAGGA CTCTTGGACAACAAGTGATATATACTTCAGTTCTACAGCTAGTACGCTCACTGTCCCAAACAATGGGGCATGCTCTTGTA TAAAGCTTTTAGCTCACTGAATTTTATAGTTGATTTTAGAAATCACAGTGAACATGTAACTAAAATTTAATTTTCTTGGT TACAGATATAAAAAAATAGGAAAACAAGTGACCGACCAAGTTACATGGCAACAATATTACCGTCCAACAATGGGACATGC TCTTGTATAAAGCTTTTAGCTCACTGAATTTTATAGTTGATTTTATAAATCACAGTGAACATGTAACTAAAATTTTCCTG GTTACAAGTCTAAAAAAAAGGCAAATCCTGTGACCAAAAGTCACATGACAGCAAATTAACCCTGAGACAAGTATACAGTC TAAATTTAAATTGATGATTACATTCCAATATAATGTACATATTTTTCTAAATTAAATGACCTGTTGATGATCACAGCTGC AGAGAAGAGACACCGTGTTCCTTCTGCTTATAACCGGTTCATCAAGTGAGTAATATTCGAGTTTATGATATCAATATTTT TTTTGCATCAAGGTGCACAAACCAGTAATATATGTATTTCAAATTTTTGTATCGAGTTTATGATATCTCAAATTTTTTAT TCTTATTTTATATGAGTTAATTCAATTTGCATATGATTTTGTAGCAACAGCATGTAATATATGTATTTCATATTTTCATT TATATATCGAATGAAAAATGAAAATGAGTGTACTTATTTTATTGAATTTTAAAAAAAAAAAAACATGATTAACAAGTTCA AAGAATTTCTCTGCAAATAAATTTTAGCACATAAAAATACATTGTAAATAACATTTGTTGAATGTTTGTTATAATTTATA AGTAGACCACAAAACTGTCAAAAAAATATGATAATATTACTCCACTGAATAAGAAGTACTGTTTTTGAGGACATGAATAA AACCCAAAACACATTTTACCAATATTTATTAGTATATTAATTCTGTAGACTAGAGATACTTCCTTCAACAAAAACAATAG CAAAACCTTCTCTTTAATATTGTCTGGTTTTGCAGGGAGGAAATTCAAAGGATTAAGGCTACTAATCCAGATATCAGCCA CAGGGAGGCTTTCAGCTCAGCAGCCAAAAATGTGAGTCGAAACTTAATTATTATATATATTTCTCACTGTCTAATAAAAG ATTTTAGTTTGTGTTTGGTTTTTCATTGAACTCATGTGTATTCGCGTTGAAAAATCCTTGCTTCTTCAAGGTTAACCATG TGATGAGAATTAATGTCTTGTCTTATGCAGTGGGCACATTTCCCTCACATTCACTTTGCAAAGCAAGCAAAGTTGGATCA CCAAGGGGAAGGAACTGAAAAGACTATGAATGGATTCTACTGATGGTATATATATAAAAATGGAAGCCTGTGAGTATGAG CTTGTTTTTTCTATGCTTGACCTAATCAGTGAAATATGAGGTTGATTGTACAACTGGATGGACTAGCTAGGTCCTGCAAA TTAACCTTAGCTTCTCACCAATGTTTAATACTTTATGTATTATCACTCTTCTGAAATGATTGCTATTCTGGTGATTGCAT TTATTATGTTGAACTTGAGCTCTTAAGTAAACAACACGTTCCTTCTATTATAATCTTGCCCCTCTTTTATGGTAACCTCT ATAGCTAAAGTAATTGTGTCTCTAACTCTCTATATAGAAAAATGTTGGGTATCGGAGAAAGAGGAAAATATGAGAGAAGT GATATACATGTTGTATATGATATGATATGATGTATGATGTGATAAGAAG
CDS sequence (LotjaGi3g1v0470400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGT TCCACACAGCACTTTGCTAACCATAGTGACTGTTAGATGTGGTCATTGTTCCAATTTGCTATCAGTTAACTTGGGAGCAT TTCAAGCATTTCCTCCTCAAGACCCTCAGCCACAGAAACAGCACCTGAGCTTTGAAGAACCAAGCAACAAAGATCTGGGA TCATCTTCAAAATGTCACAAAACAGCAGCATTTGAACCAGTGGAGCGAGAACAACCTAGGATTCCTCCCATTCGTCCTGC AGAGAAGAGACACCGTGTTCCTTCTGCTTATAACCGGTTCATCAAGGAGGAAATTCAAAGGATTAAGGCTACTAATCCAG ATATCAGCCACAGGGAGGCTTTCAGCTCAGCAGCCAAAAATTGGGCACATTTCCCTCACATTCACTTTGCAAAGCAAGCA AAGTTGGATCACCAAGGGGAAGGAACTGAAAAGACTATGAATGGATTCTACTGA
Protein sequence (LotjaGi3g1v0470400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMDMMATERVCYVHCNFCNTILAVSVPHSTLLTIVTVRCGHCSNLLSVNLGAFQAFPPQDPQPQKQHLSFEEPSNKDLG SSSKCHKTAAFEPVEREQPRIPPIRPAEKRHRVPSAYNRFIKEEIQRIKATNPDISHREAFSSAAKNWAHFPHIHFAKQA KLDHQGEGTEKTMNGFY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 177 | 177 | 1.1E-92 | – | |
| PANTHER | 1 | 177 | 177 | 1.1E-92 | ||
| Pfam | 7 | 157 | 151 | 2.9E-67 | ||
| MobiDBLite | 58 | 99 | 42 | - | – | |
| MobiDBLite | 60 | 83 | 24 | - | – | |
| SUPERFAMILY | 104 | 153 | 50 | 9.43E-8 | ||
| Gene3D | 108 | 173 | 66 | 1.4E-5 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Multicellular organism development | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). |
Expression pattern of LotjaGi3g1v0470400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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