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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0475400 |
| Transcript ID | LotjaGi3g1v0475400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | NAC-domain protein; TAIR: AT5G22380.1 NAC domain containing protein 90; Swiss-Prot: sp|Q9FMR3|NAC90_ARATH NAC domain-containing protein 90; TrEMBL-Plants: tr|A0A072UVE9|A0A072UVE9_MEDTR NAC transcription factor-like protein; Found in the gene: LotjaGi3g1v0475400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89209305..89210972) extracted from Lotus japonicus Gifu genome v1.2.
AGACGTTTTCATGCTCCCATAACCGCGTGGAAGTTTCCACTCCCATCCCAAACTATGCAAAATTTTCCAATTTTACTCGG TGAATGCATATACATCTGTCCCACCCCAAGATCTCTACCCTACAGTTCACTTCAACTTTTTGGACCCTTTTGCATACATG TGTATATATGATCATATTCAACTCATTCCAAATTTGCAAACGGTAATTAAATTAGACACCAACAAGGAACAATTTATATT CAATCAATGGAAAATCTCCCACCTGGGTATCGCTTCTTCCCAACAGAAGAAGAGCTAGTTGGCTTTTACCTACTCAACAA GCTAGAAGGGAAAAGAAACAACATAGATAGAGTTATCCCAGTTATTGACATCAATGGAGTAGAGCCATGGCACCTTCCAT GTACAATAAGCAAAAACTTTCACACCCCATCTTCATTTTCATCATAACGTTTCAATTTCTATTCTTGATTTGGTAATTTT TTGACACTTCTTGTAATGTGTTGCAGCACTAGCAGGGGAGCTTTGTAGAGAGGATAAGGAGCAGTGGTTTTTCTTTGCAC CTGGTCAAGAGAGAGAAGCTAGGGGAGGTAGACCTAGCAGAACCACAGCTAGTGGGTATTGGAAGGCTACAGGTTCTCCT GGCTATGTTTACTCTTCTGATAATAAAGTCATTGGGGTGAAGAAAACCATGGTGTTCTACAAAGGGAAAGCTCCAAGTGG AAGGAAAACCAAATGGAAGATGAATGAGTACAGAGCCATCCAAGTCTCTAATAACCAATCCAGCACTGCTACCCCTCAGG TATATTTGTGTTCCCCTCGACCCAAAAGACTAATAGGCCCAATGTCGTTCTGGACGACCCGAAGGTTCACAATTAATTGG AAACTATGTTGGTCAGCTAGGACGACCAAAAGCTATAGTCAATTTGTAATAACTTGCTTTATTTGTATGTATGTGATTAT GATGGTGTTTTGTTTTGTTGGTTTAGCTGAGGAGGGAATTCAGCTTGTGCCGGGTGTATGTGATTTCGGGAAGCTTTCGA TCATTTGATAGACGGCCATTAAAGAATGAAAGAGTGGAGTCGCGGCTGGTTCATGATGAGGCTGGAACTTCCCTCTTAGG GGGACTCCATGGTGGTGCTGGTGTGGCAGAGGCTGCTAGTGCTGTTGGAGGATCAAGCAGCACAAATTGGAATGTAAATA ATGATGATAATGAGGTTCAGCTCCAAGAACCAGTATGGGAATGGGAATGGGAGCAATTTAATTGGATTTAACTCCAGGTC ATGCTGATTGGTGGGAACTCAAGCAAGGACCCTCAATTAAATGGCTTGCAAGAATCTTGATTCAATCAACAATGGTTGAC AAGCGCATGTAGGGATATGTAATTTAACACAATCATTATATTTGTTTGTCGTGGGATAAATTTCCCCCAGCAGGAAAATA AGAGGGAAGGTAGGTACTAGGTAGGTTAATTTCTGTCACATATACTCCCCAAATTGATTTGAAGATAGCTTAGATTCCCT TATTTTATTTATCCAATTTGATTATTAAATCCATATATTTTTCAGTAGTTTTTGGATGAGTACAAACTTGACCCTTGGTA CAACCAATAATAAATTACACCTAATTATAGTAAAACTTATAAATTCATATTATAATAAAATTTTCCAA
CDS sequence (LotjaGi3g1v0475400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATCTCCCACCTGGGTATCGCTTCTTCCCAACAGAAGAAGAGCTAGTTGGCTTTTACCTACTCAACAAGCTAGA AGGGAAAAGAAACAACATAGATAGAGTTATCCCAGTTATTGACATCAATGGAGTAGAGCCATGGCACCTTCCATCACTAG CAGGGGAGCTTTGTAGAGAGGATAAGGAGCAGTGGTTTTTCTTTGCACCTGGTCAAGAGAGAGAAGCTAGGGGAGGTAGA CCTAGCAGAACCACAGCTAGTGGGTATTGGAAGGCTACAGGTTCTCCTGGCTATGTTTACTCTTCTGATAATAAAGTCAT TGGGGTGAAGAAAACCATGGTGTTCTACAAAGGGAAAGCTCCAAGTGGAAGGAAAACCAAATGGAAGATGAATGAGTACA GAGCCATCCAAGTCTCTAATAACCAATCCAGCACTGCTACCCCTCAGCTGAGGAGGGAATTCAGCTTGTGCCGGGTGTAT GTGATTTCGGGAAGCTTTCGATCATTTGATAGACGGCCATTAAAGAATGAAAGAGTGGAGTCGCGGCTGGTTCATGATGA GGCTGGAACTTCCCTCTTAGGGGGACTCCATGGTGGTGCTGGTGTGGCAGAGGCTGCTAGTGCTGTTGGAGGATCAAGCA GCACAAATTGGAATGTAAATAATGATGATAATGAGGTTCAGCTCCAAGAACCAGTATGGGAATGGGAATGGGAGCAATTT AATTGGATTTAA
Protein sequence (LotjaGi3g1v0475400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENLPPGYRFFPTEEELVGFYLLNKLEGKRNNIDRVIPVIDINGVEPWHLPSLAGELCREDKEQWFFFAPGQEREARGGR PSRTTASGYWKATGSPGYVYSSDNKVIGVKKTMVFYKGKAPSGRKTKWKMNEYRAIQVSNNQSSTATPQLRREFSLCRVY VISGSFRSFDRRPLKNERVESRLVHDEAGTSLLGGLHGGAGVAEAASAVGGSSSTNWNVNNDDNEVQLQEPVWEWEWEQF NWI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 238 | 238 | 5.0E-96 | – | |
| PANTHER | 1 | 238 | 238 | 5.0E-96 | – | |
| SUPERFAMILY | 2 | 160 | 159 | 2.09E-48 | ||
| ProSiteProfiles | 4 | 162 | 159 | 48.224 | ||
| Pfam | 5 | 134 | 130 | 6.5E-31 | ||
| Gene3D | 13 | 165 | 153 | 4.8E-43 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi3g1v0475400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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