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LotjaGi3g1v0478400.1

Overview

Field Value
Gene ID LotjaGi3g1v0478400
Transcript ID LotjaGi3g1v0478400.1
Lotus japonicus genome version Gifu v1.2
Description Bifunctional polymyxin resistance protein ArnA; TAIR: AT1G08200.1 UDP-D-apiose/UDP-D-xylose synthase 2; Swiss-Prot: sp|Q9SGE0|AXS2_ARATH UDP-D-apiose/UDP-D-xylose synthase 2; TrEMBL-Plants: tr|G7JIF7|G7JIF7_MEDTR UDP-D-apiose/UDP-D-xylose synthase; Found in the gene: LotjaGi3g1v0478400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:89470791..89474484) extracted from Lotus japonicus Gifu genome v1.2.

ATTTACGAAAATGCCACCGCTTTCTAAGTTCCCTCCTTCTTCAAAAACAGTTATAACTGCCACACCCTCTCTCCTTCTCT GATTTCAATCTTTTCTTCTTCCTCTCACAAAAAGCTTCCCATTTCACTCTCCAATGGCGCGAGTCGACTTGGACGGAAAC CCGATCCCGCCGCTGTCAATATGCCTCATCGGCGGCGGAGGCTTCATCGGATCTCACCTCTGCGAGAAGCTCATGGCCGA AACCTCCCACAAGGCCGTCGTCATCGACGTCTCCTCCGAGAAAATCAATAACCTCCTCGACAAATCTCTCCCCTGGGCTG ATCGCATCGAGTTCCATCACATGAACATCAAGAATGATTCTCGCCTCGAAACCCTCGTCAAAGCTTCTGATCTCGTACAT CCATTAATCATTCTTCCATTTTCCCCTCAATTTCCTTCTTCTTCTTCAATTTTATTTAATCTTCCAATTTTTTGTTGCAG ACGATTAATCTTGCGGCAATTTGTACGCCGGCGGATTACAACACTCGCCCGTTGGATACGATCTACAGCAATTTCATTGA TGCGATTCCGGTGGTGGGTTTTCCAGGTTGAGCTGTTTTTTGAAATGTGTGTTTTTCAATTTTGGATTATTATTTTGTGT TTGTTTGTGTAATGCAGATTAAGTTTTGCACTGAGAACAATAAGCGTTTGATCCATTTTTCTACGTGCGAGGTCTTTGGG AAGACCATAGGCAGCTTTCTCCCTGAGGAATATCGGAAGGTACCGATTTTTGTTTCATGAGTTTTTAATTAAGTTATTTT TCGATGCTCGTTGATACTAGTGTAAACAAAGATTAGCACTCGCTCCGACTGAACTCTTCATATGAATTGAGATGAAAATC TGTTTGCATTGGTATCCAAACATACAATTAGAAGTTTATATTGTCACTTGATGAAAATGAACATTCTGTTTATGATAGAT GCCTAGTCCTCAGCATTATATCATATGAAGTGTTAAATTAGGACATCATTGCATTATTAGTTTTCAAAGTTAATCAATTA GGTGTAATCAAAAAGTTAATCAATTAGGTGGAATTTGTTTTATTTTCAATTTTTCATGTTTAACTGATAGGATTTTATTG ATAATTATAAGTATGTTGTGTTGTTTTGAATGAATCTGTTACTTTTAAGAATCTGAAAGAAATAATGAAATCAGTGCAAT CATATATTTGATCATTTCCTTCACAATGTAATGGAAATTTGCCTGATATAGGACCCAAAATATTTCGTACTCAAAGAAGA TGAAACTCCTTGTATTTTTGGTCCAATTGAGAAGCAGAGGTGGTCTTATGCTTGTGCAAAGCAAATGACTGACAGGCTAA TATATGGTAAACAACAAGCTGTATTTTACTTTTGATTATGATTATTATGATTATACTTTCTTCTTTTTTAACTTAGTCTT GAGCACTGAATTGTAGCTGAGCATGCGGAGAATGGCCTCAAGTTCACCATTGTGAGACCTTATAACTGGATTGGCCCAAG AATGGACTTCATTCCTGGTGTAGATGGCCCAAGTGAGGGTGTCCCTAGAGTCTTAGCCTGCTTCAGTAATGTAATATCAT CTAGCTGGTTCTGTTTCATGTCTTCATGATGTCAATACACTACTATTTTTCTCAAAGCTTCTTCTTGTTCCAGAATCTCC TTCGCGGCGAGCCGCTCAAACTTGTGGATGGTGGAAAATCCCAGAGAACCGTTCTCTATATCAAAGATGCAATTGAAGCT GTTATGTTAATGATTGTAAGTTCAAAAGTATGCTTGTGTTTCTGTGATGAGCATGGACTAATGTATATGGCTTCATGTCA CAGGATAACCCTGAGAGAGCAAATGGACATATCTTTAATGTCGGAAACCCAGACAATGAAGCTTCTGTGAAGGAACTTGC TGAGCTTATGATACAGGTAGCTCTAGCTTCAACAGTTGTTCCATTTTTTTTTAGTGAATAGTCATTTTTACCCGAAAAAT ATAGGTCGGTCAACTTAGTAACTCAAAAATTGAAATAGGTAAAATAGTCCATAAAAGATTAAAAAAATTCAATTTATAGT GTTTGTTTAACCGTTGGTAAGCATCACAACGGAGAAACACAGTTTCCAATGTACATTTTTCCATAGTAACGAATTTGACA GATTAGATAAATAATTGTTTACCTTTTGGTGAATGGCAATAGAAACATTTAGTCCTTAAAAGATGAAAATCAAATCAATA TAATCCTTGAAAGATGAAAAAATGACTATTTTGCTTATTTTGAGAGACTATTTTGCTTATTTAGTCGTTCCATTTTTTTT TTCTGAAATTCTTAATCTTATCGTTGAGAGACTATTTTGCTTATTTTCATAGTATGAGTATGAAAGTCGTTCACCCTATA GCTTTTAGGGACTAAAGTATTCACACTTTTTTCCTCTTTCTAAAACTAGTCTCTAAATAGGCTCTATGCTTTGTTTCAAA GAATAATTAACAACCTTGCCTTATTTTGTCTTTAAAATTAAGGTTTATGCAAATGTGTCTGGTGTGCCAGCCTCTAGTCT ATCAACTCTGGATGTGAGTTCAGAGGATTTCTATGGTAAAGGCTATGATGACAGTGATAGGCGCATCCCTGATATGACAC TTATCACCAAGCAGCTTGGTATTCATTGATTCTTTTAAATCTGTGGTATTGTTCTGCAGCATTCTTGTTAACATTCTTAT AAATGTATATTTCTCTGGTGTTTAGGTTGGAAGCCAAAGACACCTCTTGATGAACTGTTGCAAGTTACCCTCAAATATCA ACATGAGACATATTCTCATGCTATCAAGAAAGAACTCTCAAAACCATCAATTTGACTCCAAGTTCCTTTGGAGTTACATA GCATGTTAATATCGCTATGTTTTTTTGACACCTAAAAGCTACTCTGATAAATATATCCCCAGCATTGATTTTACTTTTAA AATCAATTGTAGAAGATTTTCCAAACATGCACTCGGTTTTGTTTTGTTTTGTTTTGTAAAGATGATACTGACTAATGTTG CACTGGTTGTGAGCTTCTAAATCACAAATCAAGTGTATATCTATAGTCATAGTTTTGTTAATTCTTCTTGTAACTTAGCT TTTTGAATACAAATTTTTGCCTTTTCTTAGGGGCTATGGCATTTGCCTCCTTTTTTTATTCAGGCATTTTCATTGGATTA CATAGGACTCTGCATTATTCTACCTTCTGCATATGTACTACTAATACATGCTCAGTGTTTTCATATCAAACTTGAGATTA ATGTAAAGTTTCTTTGTTAAGATTCAAAATCTCAAACTAAATTAAATTTGAAACTAGATAGTTAAAAAAAGAAAAAAACT CCTTGCAAGGAAACTGGTTACAAGTTATTCTTGTCTTCCATTATGACAAGATAATGCAACAGAAAGTCAGAAACTAAATT GAACTTTCTAAGATGAAGCTATGCAACACCAACTATGTAAGCGTTCCATGAATCCTGTTGCTGAAAACTTGTTGTCTCTT CATATTTAACATCTTTTCCCGTACCAAATCCCTCCGTTCTTGTAATTTCTGAAGTGTCTGGCATCTCTCGAATCCAAAAG TGAACAGACCGAAATCCTGCCTCTTCTAAGCAATCCCTGATCTCAGGCAATGTCCACCTGAGTCACACCCTTTATGATGT AAGAAACTACCAAA
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0478400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGCGAGTCGACTTGGACGGAAACCCGATCCCGCCGCTGTCAATATGCCTCATCGGCGGCGGAGGCTTCATCGGATC TCACCTCTGCGAGAAGCTCATGGCCGAAACCTCCCACAAGGCCGTCGTCATCGACGTCTCCTCCGAGAAAATCAATAACC TCCTCGACAAATCTCTCCCCTGGGCTGATCGCATCGAGTTCCATCACATGAACATCAAGAATGATTCTCGCCTCGAAACC CTCGTCAAAGCTTCTGATCTCACGATTAATCTTGCGGCAATTTGTACGCCGGCGGATTACAACACTCGCCCGTTGGATAC GATCTACAGCAATTTCATTGATGCGATTCCGGTGATTAAGTTTTGCACTGAGAACAATAAGCGTTTGATCCATTTTTCTA CGTGCGAGGTCTTTGGGAAGACCATAGGCAGCTTTCTCCCTGAGGAATATCGGAAGGACCCAAAATATTTCGTACTCAAA GAAGATGAAACTCCTTGTATTTTTGGTCCAATTGAGAAGCAGAGGTGGTCTTATGCTTGTGCAAAGCAAATGACTGACAG GCTAATATATGCTGAGCATGCGGAGAATGGCCTCAAGTTCACCATTGTGAGACCTTATAACTGGATTGGCCCAAGAATGG ACTTCATTCCTGGTGTAGATGGCCCAAGTGAGGGTGTCCCTAGAGTCTTAGCCTGCTTCAGTAATAATCTCCTTCGCGGC GAGCCGCTCAAACTTGTGGATGGTGGAAAATCCCAGAGAACCGTTCTCTATATCAAAGATGCAATTGAAGCTGTTATGTT AATGATTGATAACCCTGAGAGAGCAAATGGACATATCTTTAATGTCGGAAACCCAGACAATGAAGCTTCTGTGAAGGAAC TTGCTGAGCTTATGATACAGGTTTATGCAAATGTGTCTGGTGTGCCAGCCTCTAGTCTATCAACTCTGGATGTGAGTTCA GAGGATTTCTATGGTAAAGGCTATGATGACAGTGATAGGCGCATCCCTGATATGACACTTATCACCAAGCAGCTTGGTTG GAAGCCAAAGACACCTCTTGATGAACTGTTGCAAGTTACCCTCAAATATCAACATGAGACATATTCTCATGCTATCAAGA AAGAACTCTCAAAACCATCAATTTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0478400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MARVDLDGNPIPPLSICLIGGGGFIGSHLCEKLMAETSHKAVVIDVSSEKINNLLDKSLPWADRIEFHHMNIKNDSRLET LVKASDLTINLAAICTPADYNTRPLDTIYSNFIDAIPVIKFCTENNKRLIHFSTCEVFGKTIGSFLPEEYRKDPKYFVLK EDETPCIFGPIEKQRWSYACAKQMTDRLIYAEHAENGLKFTIVRPYNWIGPRMDFIPGVDGPSEGVPRVLACFSNNLLRG EPLKLVDGGKSQRTVLYIKDAIEAVMLMIDNPERANGHIFNVGNPDNEASVKELAELMIQVYANVSGVPASSLSTLDVSS EDFYGKGYDDSDRRIPDMTLITKQLGWKPKTPLDELLQVTLKYQHETYSHAIKKELSKPSI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43245
6 378 373 1.6E-234 –
PANTHER
PTHR43245:SF21
6 378 373 1.6E-234 –
Gene3D
G3DSA:3.40.50.720
15 374 360 4.3E-100 –
Pfam
PF01370
16 283 268 1.3E-56
IPR001509
SUPERFAMILY
SSF51735
16 367 352 6.5E-61
IPR036291

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0050662
Molecular function Coenzyme binding Interacting selectively and non-covalently with a coenzyme, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0478400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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