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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0484000 |
| Transcript ID | LotjaGi3g1v0484000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cyclin-dependent kinases regulatory subunit; TAIR: AT2G27960.1 cyclin-dependent kinase-subunit 1; Swiss-Prot: sp|O23249|CKS1_ARATH Cyclin-dependent kinases regulatory subunit 1; TrEMBL-Plants: tr|A0A1J7I6Q1|A0A1J7I6Q1_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0484000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90132442..90133476) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTCAGATCCAGTATTCCGAGAAGTACTTCGATGACACTTACGAGTATAGGTATACACACTGTTCGAATTCCTTGAT CTTCTTTGTGATTAACCTAGTTTTGTTTTTGAATCGTTTTTTTTTGTTGTTGTTCAGGCATGTGGTTCTGCCTCCTGAAG TTGCTAAACTGCTTCCTAAGAATCGGCTTCTCTCCGAAGTGAGTAATTACTCTCTTTGTTGATTTCTGTGATCTGTAGAG TCGTTCTTTGTTGATTTGTGTTGTTTGTGACTGATCCAGGTTTTATATGATTGTGTGATTCTTTCGTTTTTGTTCATCCT GTTTTGTGTAGTAATCTGCCTATGAAAATGGATAAAAGTTCTTAGGATAGTTATTTCCTTTTTTCTGATTTTTTTTTTGA AATATAAATGGAATTTTATGATGTTGTTTTGAGACTGATGGGAATGTGTGATGGAATTTTCTGTTTAGAATGGTGAGAAT TGAGTTTTGATCCTGATCTTTGATGCAAAATACTGCGAATCGTTACTAAGTCAATGTGGCCTATGCTTCTCATGCTTGCT TTGCTTTAATTTTGATTGTTGGCACTCTTCTGATGAGTGAAAATTGTTTGTCGAGGGTAATTGATAACTGAATATTGTTT AACCTAAGATGTTCAGTTTGGGTTGTGAAGGTTCTGCTTTTATCATCATCATCATCATCATCATAATTATCAATTCAGGA CTAGGTCTATGTATTTGATTTGATATTCTTTTATCTAGTTGAAGTGTAAATGATTTTCTGGATTTCTTATTCTTCTTAAG CAAGTGTTTTCAGTAAAGGTGTTGTTTGTTAATATTTTGGGTGTTGTTTCACTAAGTACATTCTTTTGGTTTGATCTTAC AGAATGAGTGGCGTGCAATTGGGGTTCAGCAGAGCCGTGGCTGGGTTCACTATGCCATTCATCGTCCTGAGCCTCACATA ATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAGGCTCAGCAGAGCATGCTTGTCAAATGA
CDS sequence (LotjaGi3g1v0484000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTCAGATCCAGTATTCCGAGAAGTACTTCGATGACACTTACGAGTATAGGCATGTGGTTCTGCCTCCTGAAGTTGC TAAACTGCTTCCTAAGAATCGGCTTCTCTCCGAAAATGAGTGGCGTGCAATTGGGGTTCAGCAGAGCCGTGGCTGGGTTC ACTATGCCATTCATCGTCCTGAGCCTCACATAATGCTTTTCAGGAGGCCTTTGAATTATCAGCAGCAGCAGGAAAACCAG GCTCAGCAGAGCATGCTTGTCAAATGA
Protein sequence (LotjaGi3g1v0484000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQENQ AQQSMLVK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 80 | 80 | 7.7E-54 | – | |
| Gene3D | 1 | 84 | 84 | 9.2E-41 | ||
| SUPERFAMILY | 1 | 82 | 82 | 3.01E-37 | ||
| PANTHER | 1 | 80 | 80 | 7.7E-54 | – | |
| SMART | 3 | 72 | 70 | 1.0E-47 | ||
| PRINTS | 3 | 17 | 15 | 2.9E-27 | ||
| Pfam | 4 | 70 | 67 | 4.5E-36 | ||
| ProSitePatterns | 6 | 24 | 19 | - | ||
| PRINTS | 18 | 32 | 15 | 2.9E-27 | ||
| PRINTS | 40 | 54 | 15 | 2.9E-27 | ||
| PRINTS | 55 | 69 | 15 | 2.9E-27 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Cyclin-dependent protein serine/threonine kinase regulator activity | Modulates the activity of a cyclin-dependent protein serine/threonine kinase, enzymes of the protein kinase family that are regulated through association with cyclins and other proteins. |
Expression pattern of LotjaGi3g1v0484000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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