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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0485300 |
| Transcript ID | LotjaGi3g1v0485300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Shugoshin-1; TAIR: AT3G44960.3 shugoshin; Swiss-Prot: sp|Q0WTB8|SGO2_ARATH SHUGOSHIN 2; TrEMBL-Plants: tr|A0A0B2S2U8|A0A0B2S2U8_GLYSO Shugoshin-1; Found in the gene: LotjaGi3g1v0485300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90262906..90266057) extracted from Lotus japonicus Gifu genome v1.2.
AAAACGCAACTTTCGGTTCGGAAAGCCGTTAGACAACAATCCATCCCTGCATGTGTTTCTTTCTCTCTTTTTCCTTTTCC TTTCTTTTCTTCTTCCTCACTTCTTCCAAACACTGAATCAACGACGACGCGAGAGAATGGCCATGGCGAAGAGATCCTCC ATCGGAAGCTTAATGCGGAAGAAGCTTTCCGACATCACAAACTCCGATCACCACCACCACCTTCCGCCACTCGATTCTTT CCCCTCCGATCAAGATTGCACCATTCAACAACTCCTCAAGGTACACTACACTACACTACACTACACTCTGCGTTTTTCAT CATAACAGAATTAACAGATTCCATAACTAACTAACTAACTAACTAACTTTCGATGTGAATTCCGATGCAGGAACGCGAGG CGTTGATTCAACTCCTTGCAGAGAGAAAGTATCCTCTTACAATGGCAATAGAAATTTAATTTTTATTTTAGGGTTTGGGG GAAACTGGTTTTTTTTTTTTTTGTTTTCCTTGATTCAGATTAAAATTTGAACAGTAAAGTAATGGAGACGAATGGAGCAG AGGTGAAGAAACTGCGCGCCGATATCAAGAAGCTGCAATTGCAGAATTGGAGTCTTGCTCAGTCCAATAGCCACATGCTA GCGGTTAGTTTGATTGCCAAGTAGCATAAGTAAATAATTATTCTAAATAAGTGATTATGAGAATTGCATTGTAAATAAGT GATTATTTATGAGAATTCAATTATTCATAGAGTGATATTGTTAGTGATTGTTGTTGTTTGTGGTTAATTTTGTAGGAGCT GAATTTGGGGAGGGAAAGGGTGAGTTCAGTTTTCATTTCAGCATTTGTAGTTACTTGTCTTTTGTTTTGAGCAATCATTG TTTTGAATTTGGTGGTACTACTTGTGTTACAGATAAAAACACTGCAGCATGAGCTTTTGTGGAGGGCTGCTTTGCTGAAA GGAAAGACCATGGAGGATGTACAGGTGTGCTATTAAGCCCGAATTCTGATTCAATTTCAATTGTATCTTAGAGTTTCATT GAATTGGGGTTGGGATTGTGGGATGTTATGTGTGAGAAAGCTTCCTTTGGATAAGAAAATGGGTAGCTAGTTTGTCTGTT GACATGAGTGTTTGTGCACTTTTGTGACATTGCATGGACAATTTGTGTTTGCAATTGACTGAGGCTACACAGTTACAATT TTTATTAGGTAATTAGGATTCAATAGTCATTGTGATTTGTGAATATGTGTTTTGTCCTGAACTGTCTTGGCTTGCTTTTT AGTTTGTAATGATTAATGAATCTTCTAATGATCTATTGCTATGTCCTAATTAAGTATCCAACTGCTTGTCCCTTTTTTTT TGAGACCTCTGTCTTCAATGTATGATGTTGATTTGCAAGAATTCACATTATATGCAAAAAGGGCCTAGTAATCGTTCTAG CTTGAGTGAAATGATACAAATTTTGTGTGTATCAGTGTATGTGCTTTAAAACACTCCCCCACAATATGCTATATATGCCT ACTACCAAGCACACACTAAAACACCGCACATGTAATGTCTGGATACCAGGACACCACACACGTATATTTGGGAGAGAAAA GTTAATCATAACTATCCATGCATGATTTGGTCACATTAGGTCATTAGCTCCTCACTTTCATGTTCTCCCTTGACACACTA TATACACACACATTACTTGCGGCTCATAAAAAAAAACATACATTACTTGGGGTTCAAGGGTGATCATAGGAAGAAGAGGT ATTCTCAAATGAAGTGTGATCATAACCCATCATAATTTATGATGGATTTTTTGAAAGTTACTTAAAAACATAATGAAAAA ATTTCATGAAAATTGTTTATTCAAGTGTTCTTGAGATGTTGGCTATGTTTCCGAGTTAATAAAACTAAATTTTTAATAGG ACACCTGATAAAGAGTGTTCGACATGATGTGGGAAAAATGTCCGGACACTTGACACATCAAGAAGTGTCTGTGCTTCATA GTAGTCTAAAAAAATGCACTCCATTGCCTTTGTTTTTAGTTGTTTTCACATTTAACAATACATTTTTGCAGGAAAAAGTG GAGATCGATGCTCAAAAGAGTGCTTCAATGTCACAATCACAGGTGCCTAAGGTATAAACCCTTCACTTATGTGTTTATCA TATTGAAGGCATTGATGAATGGAACTCATTCTCTTTCTTCTTGTATACTATGATTGGCTCTAGGAAGAAGATGAAAAAGT AGTGCAGCCACCCCCTAAAGCTAGCAATGATGAACAGCATGCCTCTATGAATAGAAGACGCATAAGGAGTAGATGTAAAT GTGAGGACTTAACTTCATGCAAATTTTACTGACATTTTTTCCCCTTTATTCTGTTAACCTTTGTTATGGCTTTGCAGCTA TTGGTTCTTCTACTGCTTCCACAAAGAATACAACCAAAGACAAGGATAAAGACAATAGGTTAGTTCACGCTCAACAACTT ATGTGATCAATGCTTAGTGAAGTTAAGCAATACATGGTTTAAATTGACTCGTTGGATATCTAAGCTCATTGAAATGAAGC ACCTAAATTTTGTTATGATGTACGCATTAGAAGCTTGAAATTGCATCTACTAGACTCCTACATTCCAAAAAGATGATTTA CCCTTTTTTGTTATTGGTACGCAACAGAAGTTTGAGGAGACATTCTGCTTCGTTCAAAACCCGTGAACACGAACCCCTAG AAAATTTGTTTGAGCTAGAGGATGCCCAATATCTTGTCACTCAATCTGGACCTAACATGCTGAGTTCTCCAGCTGTGAAA ACTGAAACAGGAGAAAGCTCTGTTTCAAGAAATGAAACTACAAGATACTCTTTTGGAAGACCCCCGCGAAGAGCAGCTGA GAAGGTTCAATCTTACAAGGAGGTTCCTCTAAATGTCAAGATGCGAAGATTACAATAAGCCAAAATCAACTGGATAGGAT TTAATTCAATGCTTTTTCTTCAGTTATTTGTATCATATGTTGATGCTGATTTGTGTATGCTGTATCTTATGTTGTATTCT GTGTTCTTCATTTTCTGGTTATTAATCAATTAATTTGTGTACTTCCATTAGTTCCATAACTATTTTTTACTAAAACGAAA ATTATACACTTTGGATAAGTCTTAAGTTTCAC
CDS sequence (LotjaGi3g1v0485300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCATGGCGAAGAGATCCTCCATCGGAAGCTTAATGCGGAAGAAGCTTTCCGACATCACAAACTCCGATCACCACCA CCACCTTCCGCCACTCGATTCTTTCCCCTCCGATCAAGATTGCACCATTCAACAACTCCTCAAGGAACGCGAGGCGTTGA TTCAACTCCTTGCAGAGAGAAATAAAGTAATGGAGACGAATGGAGCAGAGGTGAAGAAACTGCGCGCCGATATCAAGAAG CTGCAATTGCAGAATTGGAGTCTTGCTCAGTCCAATAGCCACATGCTAGCGGAGCTGAATTTGGGGAGGGAAAGGATAAA AACACTGCAGCATGAGCTTTTGTGGAGGGCTGCTTTGCTGAAAGGAAAGACCATGGAGGATGTACAGGAAAAAGTGGAGA TCGATGCTCAAAAGAGTGCTTCAATGTCACAATCACAGGTGCCTAAGGAAGAAGATGAAAAAGTAGTGCAGCCACCCCCT AAAGCTAGCAATGATGAACAGCATGCCTCTATGAATAGAAGACGCATAAGGAGTAGATGTAAATCTATTGGTTCTTCTAC TGCTTCCACAAAGAATACAACCAAAGACAAGGATAAAGACAATAGAAGTTTGAGGAGACATTCTGCTTCGTTCAAAACCC GTGAACACGAACCCCTAGAAAATTTGTTTGAGCTAGAGGATGCCCAATATCTTGTCACTCAATCTGGACCTAACATGCTG AGTTCTCCAGCTGTGAAAACTGAAACAGGAGAAAGCTCTGTTTCAAGAAATGAAACTACAAGATACTCTTTTGGAAGACC CCCGCGAAGAGCAGCTGAGAAGGTTCAATCTTACAAGGAGGTTCCTCTAAATGTCAAGATGCGAAGATTACAATAA
Protein sequence (LotjaGi3g1v0485300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAKRSSIGSLMRKKLSDITNSDHHHHLPPLDSFPSDQDCTIQQLLKEREALIQLLAERNKVMETNGAEVKKLRADIKK LQLQNWSLAQSNSHMLAELNLGRERIKTLQHELLWRAALLKGKTMEDVQEKVEIDAQKSASMSQSQVPKEEDEKVVQPPP KASNDEQHASMNRRRIRSRCKSIGSSTASTKNTTKDKDKDNRSLRRHSASFKTREHEPLENLFELEDAQYLVTQSGPNML SSPAVKTETGESSVSRNETTRYSFGRPPRRAAEKVQSYKEVPLNVKMRRLQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 290 | 288 | 1.4E-88 | – | |
| PANTHER | 3 | 290 | 288 | 1.4E-88 | – | |
| Coils | 64 | 84 | 21 | - | – | |
| MobiDBLite | 135 | 215 | 81 | - | – | |
| MobiDBLite | 192 | 215 | 24 | - | – | |
| MobiDBLite | 234 | 262 | 29 | - | – | |
| MobiDBLite | 234 | 277 | 44 | - | – | |
| Pfam | 265 | 289 | 25 | 1.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Chromosome, centromeric region | The region of a chromosome that includes the centromeric DNA and associated proteins. In monocentric chromosomes, this region corresponds to a single area of the chromosome, whereas in holocentric chromosomes, it is evenly distributed along the chromosome. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Meiotic chromosome segregation | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. |
Expression pattern of LotjaGi3g1v0485300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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