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LotjaGi3g1v0485800.1

Overview

Field Value
Gene ID LotjaGi3g1v0485800
Transcript ID LotjaGi3g1v0485800.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Vacuolar protein sorting-associated protein 24 like 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|V7AFF3|V7AFF3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:90328031..90333708) extracted from Lotus japonicus Gifu genome v1.2.

GAATAATGCGTTTTTTTGGAACACGCGTAACAGGGGAAAAAGGAAGAAGATGGTGGTGGAAGGGGAAACTTTCTGTACGC ACACCACCGAAATCGAATAATCTCTCTCAATACGATCTGATCTTCATTGATTTTCCCAAAAAGATTCCGTTTTTGAATCG ATTGATTTCTGGGCACCTTTCATCTTTCCGATTTCTCCAAACCCTTTTTTCTGGTTTTAGGATCAGTGGTAAATGGAGAA GGTGATAAACATTCTGAAACCAAAGCCAAATCCACAGCAACTGCTGAGGGATTGGCAACGCAAGCTTCGCCAAGAGTGCC GCAACGTTGAGCGCCAAATTCGCGGTAATGTTCTGTTAAACCCCTGATTAATCTCTTGTTGTTCTGATTATCTTTTGGTT TTGTCTGATTTTTGTGATTTTGGATTTGTGTTTAGATATTCAGAGAGAAGAAAAAAGTGTGCAGAAAGCGATTAGAGAAG CTGCTAAGAGGAATGATATGGGCTCTGCAAAGGTTGGTTTGCTTTTGATTTTACTTTTTGCTAGTGCGGGTGAGTGTCTG TTTGATTTTCAGTTAGGAAGTCCATTTGAAGCATTGGAATTCGAGATCACGATTTCCAATGCACATTCAGCCAACGGAAT GCACTTGTTGGGTTGAGTTTTTTGTTTTAATTTTTCCTTTTTTTGGGGAGTGCTGTGCAATAATTTTGACTTTGAGGGAT TGGTAAATGTGTGTCGAATGTGATTGCCATGATGGGCATGTTTATAGAAGGGGGAACATAGGGAATTGAACTAAGATTTT GTGAACTTGCAAGTGTCAATTGTGAGTTTTGTTGGTCTTGGTCCTATAGGCAGGAAGAAGTTTTAATGGTTTCTTCATGT GTAGGATACATTTTCATCTTGTTTAGTGTATGTGGGTATGCTGGATATTATTTGGCTGCTTATGAGATATTTTAATGTAA GTCCCAGATGCTCAGGATAGGATGATAACATAAAAGGTGCTGATAGTGTGTTCATGGGGGAATAAACCTAGAATATGCTG ATTGTAAGCGATTTTTAGATGGGGGTTGTCAAAATATTTAAGGTAGAATTGAATGGTAATGGAGCTAAAAGAATCTGTGG ATTAGGGTGGACTTCTTTCTTGTTAGGATTGGTCATAGTACTCGGTAAACTAACAATAAAGCTATTTGTGGTTTTTTCCT AGTGTATGACCTTTTAGGCAACTATTTTTTATGCCTTTGAGATATCAGGGTTTGAAAGAGTGAAGTTAGTCTTTTGAGAA TTTTTGGCTTATTATGATGTTTGTGCAACTTGCAGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGT CTTCATGAAAATAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGTTGGTAGGTTCTGCTGTGTTTTATT AACCATAATTTAGCCACATAGCAAATTAAACATGTCCAAGATGACTGCTTGTGCCTGATCCCAGTTGTTTGATAATTGAT GCCTAACTCAAACTTTGATATGCTTCAATCCCTCTTGTTTGCTAAATTGTATGGGTAAACTGCTCAACATTGGATTTGTT TATGATCAATTTTTTGGTTGGAGGAAAATATCAACTGACGATTTGCTGCCATGGTCCTTAGCTTTTCCCCAGGGTAGGGA GGGGAGAATTGACTGGGGTGTTTTTTTGGTATGCACTATTTAGGTAAGTTTGAATTTTGTCCTGTGGGCCATGTAGTGTT AACCGTAACCCAGTAGAAGCTCCAGGATTTATAAATTACAAGGAATGACCAAAACATTGGAATAATAAGAAGAAAAATCC GTTATTTGACAAATATCAAGCCTTCTTATAATCATAAGTGCATAACTGAACTTGACTAGCAAGTAAGCAATCTTCATGGA CTTGGCTAATCCATGTAGCTTTGATATGACTCATCACCTACAACTTCCTTAAATTTTATTTTCTTTAAACAAGTAAACTA AATCCCTGAAAATAAATTCATATGACAATCACAAATGAAAACTATTAAAACTTCAACTTAATCACTGCATGATCTAGATT ATGAGATTGTTTTTTGGGGCGTCTTATGTGTCGGATCGCATGTATGATCAAAACTTAGTGGGATTGATCTGAGATCTTTG ATCTTGATTGCCAAATCGGAATGCCATGCAATCATTGTTTTGAATTCCTGGTTCTTATTTCATGACCCCGTTTGATAACC CAGATATTTAGGGGAACTTCTTAACCCTTCAGATGAGAATCTTCCCCTCTCATTCTACAAACCCTAATCAAACACTCCAC CCTCTCGTCTTTCCCAATCAAAAGCCCTAATTGCAGCTCACAGTACCCTTGCGCATAAATCTGTCATCCACCTTCTGTCG TCTCACATCCTGTGCATCCCAACAAAGCGTGGAACTCTTGCATCTCTGTCAGTGTTCAGTGGTCTCTGTCCTCTCTGTTT ATGTTTTATTTTTCAAGAAAACATGACTTCAGTTCATGTTGGATGCTCCTAGAGTGCGGAGTGATGTGGGCTAGAAACAT GGTGTTTCTGTTTATGGTGATGCAAGAAAAGTCAAATGTAAATACTGTGAAAAGGAGGTAACAGGCGGCTTTTATTGATC AAAACATCTTTGGAAAGGAATAAAGGACTTTGGAGCTTGCGTTTCCTGAGTACAAGAATAGAGACTGGGTGAAGTCATGA ATGAAGTAGAGGCCTACCATTCCCTGGTCTTCAAGAAGAAAGGATAGTAGGAGACTTGCCATCCCTCCTTTTCATATTTT TTTTCCACTATTTCCTTTAGTTTATTTCTTTATATGAAGGACCAGATGATTGTCTAGAAAGGATGGTAGTACACTTTCAA GAGGTGGCTAAGATTGGCAGTCAACTTACTGATTTCAAAAGTCAAGCAAAGGTTTTTGGTTGTGTGGTAGCTCCACTTGG ACTTGAAAACAAAACTCCACCATAGTGATGGGAATCTTATGGTGACAAACATCCATAGCTGCAAAGCTGGACTATATGTG TATTGAGCTTGGCATGTAATTCCTCCAGCTGTAAGGGTAATTGGAGTGCCTTCGAGATGGTAAAATATTTGGATTTATGA AATGAACTATATCCTAGTAAAAGGGATCATATGTTTATTCATTTTGTAATTGTTTAGGTCCACCACACCAGTAAAAGAAA CCTTACAAAGTAGAAAACCATGTTGTATTTGTAATGGCTAAGTTAAAATTGGTGCTGAAGGAGCAACCTAGGAAAGAAGA TAACTTTACCATTGAGTTTCTAATGGCGATTCGTTAGTAGAGTGATCAAAACTTGGATTTGAATTTGGATGCTCCAACTG AAGACAATTTGGTTCAAGTTGAAGATGTCAATGCTAGTGGTGGTAGAGGTGGTGCACTTGTGGATGATTTGGAGGTTCCT AATGCTGGTGGTGGTGAAGTTGATGAAGGTGGAGGTACCATTAATCAAGATAAAAGATCATGTGGAGGATGACTATTGTG ACTGGGGCCTTAGATATTTGCTAGACTTGAATTTCAGTTGAGTGGTGAAAAATTTATGTTGTGACTGGTCATGAGTTGTA TTGGATGTTATGCTTATGATTTTTCAATTTAATGATGTGATTTAGAGATTATTTTCCTTATCTATGTATGCATATGTATA TGTTAAGTATAAGACAGTGTTATCAAATAGCGGCCATAGCGGATTTTTGGCCAATCGCGACGCCGCTATTCCCGCTATTT CTGCTATTCGCCGCCAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGCGATCGCGATTTGATAACA CTAAGTATAACATTGCATTCTTGGTAGGACCTTACAATTTATGTTATGATTGTTGTACAATCGTGCTATGATCTTGCAAA TTATAATCTTGTACCCCCCCCCCCCCCCTTCTCAGTTTTATGTAAAACCTCGATTTTGACAATATCGGTTGTAATTGGCA TACCCTTGGTGGTGAATCATTATGGGTATACTGTCGGGAGGAAATTGTATTCTCCAATTTATAAACTTAGTGATGACTTT AAATGAAAACAGTAAGAGTGGGGAAAGGGAGTGAGAGTTTGAGGGTTTTAAGCTAAGTCATGTTTTGTCCTGTTCAGCTT TCCTCATCTTCAGTATTTCTTACTTGTCCTGACAGTCTGACACAATATCTCTAGTGTGACAAATATTATGTAATGTTTTT GCTGTACCTGTTTTTATTGAATAGTTATGTGTAATATTTAGATCAATCATTTGTTGTTTTAGCTTCAGATTCGTTTGCAA TTAGTCATCGTGATAGATGAGTTATTACAGTTTTGTTCTTCGGAAATTCATGATTTGGTTGCTTTTGCAGCAATTGCTCG TACTGTGGGGCATCTATCTAAGAGTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAATGGCTGTGA CAATGCAAGAATTCAGCAAAGAAATGACAAAGGTATGTTGCAATAGGACCACTCTTTTTTCTCCTCTCTTCTCTCGGTGG TTGCAAAAGATAGTTGCATGGTAGTTATCGGGAATGTTGTCTCTTTCAGGCAGGCGTTATTGAGGAAATGGTGAATGATG CTGTCGACTCAGCACTAGATTCCGAGGACATTGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCT GGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAGGAAAGAGAAGGTGAGGCAACCTGCTCAAAGCGTTAGAGCCGCAGA GGAGGTATGTGCAATTCATTTCCCTTGTAACAAGTCTCACCCCTGTCTCAGAGTACACTAATTATGGAATGCATTGTTAT AATTTGTAGGAAGAGGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGT TAGGTCATAAAAAAGTTCCCAGTTTTGCATCCTCTACATTGTACCCAGGTATATTTTAAGCATGGTAGTCAAAATCACCA AATCGCTAAATCGCAAGGGAGATGTTGACATGTTTGTATCCTATTTGTAATATTCAGATTGGAACAGACAATTCCCTATT AATGGGAAAGAGAAAACTGACTGGGATGGCAGTTTGTATGTAAATTACACTAAAATCTTGGGGTGTATCAAATCATCAAT ATATAGATTTTCATCTGGATTTTCTGTAAAAGTCATTGTTCATCATCACTAGCCATTAATCTTTCTACCATGATTTCTCA TGTAGTCTTAAACCTTATCGCTTGCTCATAAAGCTGCATTTGATTAAATTATGCATAGAGAACCAATATTATGACACAAC TGAGAGGTTGAATCAGGATAACAACATCAATGTCATCTCAGATCATCATTTTCACTACAACAAAATGTACATAATTCTTT GATCCTAAAAAGCTTGCATCTTTGTTCAATCAAAAAGTAAAATGTCTAGTTTCTCTTGCAAGGGAAATCACATGCTTTTC TCGTTTATGATATGAATATTATCGGAATCTGGGAATTAAGCCAAAGAATCTTGACACAAAGCTCCTACTATAAAGCTATA GCTTTGGAATTACTAACAACTAACCACTAACATTTGTCTATAAAAAAAAACAACGCAGAACATAAATGTTGTTTTTAT 

CDS sequence (LotjaGi3g1v0485800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAGGTGATAAACATTCTGAAACCAAAGCCAAATCCACAGCAACTGCTGAGGGATTGGCAACGCAAGCTTCGCCA AGAGTGCCGCAACGTTGAGCGCCAAATTCGCGATATTCAGAGAGAAGAAAAAAGTGTGCAGAAAGCGATTAGAGAAGCTG CTAAGAGGAATGATATGGGCTCTGCAAAGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTCAT GAAAATAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGTTGCAATTGCTCGTACTGTGGGGCATCTATC TAAGAGTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAATGGCTGTGACAATGCAAGAATTCAGCA AAGAAATGACAAAGGCAGGCGTTATTGAGGAAATGGTGAATGATGCTGTCGACTCAGCACTAGATTCCGAGGACATTGAA GATGAGATAGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCTGGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAG GAAAGAGAAGGTGAGGCAACCTGCTCAAAGCGTTAGAGCCGCAGAGGAGGAAGAGGCTATAGCTGAGGGTGTTGATGATG AAGAAGAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGTTAGGTCATAA 

Protein sequence (LotjaGi3g1v0485800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKVINILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLH ENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKEMTKAGVIEEMVNDAVDSALDSEDIE DEIEEEVDKVLTAIAGETAAELPEAVRKEKVRQPAQSVRAAEEEEAIAEGVDDEEEMEEIRARLAKVRS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER 3 229 227 1.8E-135
PANTHER 3 229 227 1.8E-135
Pfam 21 188 168 1.2E-30
Coils 22 56 35 -
MobiDBLite 185 205 21 -
MobiDBLite 185 217 33 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Biological process Vacuolar transport The directed movement of substances into, out of or within a vacuole.

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0485800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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