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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0485800 |
| Transcript ID | LotjaGi3g1v0485800.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 24 like 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|V7AFF3|V7AFF3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90328031..90333708) extracted from Lotus japonicus Gifu genome v1.2.
GAATAATGCGTTTTTTTGGAACACGCGTAACAGGGGAAAAAGGAAGAAGATGGTGGTGGAAGGGGAAACTTTCTGTACGC ACACCACCGAAATCGAATAATCTCTCTCAATACGATCTGATCTTCATTGATTTTCCCAAAAAGATTCCGTTTTTGAATCG ATTGATTTCTGGGCACCTTTCATCTTTCCGATTTCTCCAAACCCTTTTTTCTGGTTTTAGGATCAGTGGTAAATGGAGAA GGTGATAAACATTCTGAAACCAAAGCCAAATCCACAGCAACTGCTGAGGGATTGGCAACGCAAGCTTCGCCAAGAGTGCC GCAACGTTGAGCGCCAAATTCGCGGTAATGTTCTGTTAAACCCCTGATTAATCTCTTGTTGTTCTGATTATCTTTTGGTT TTGTCTGATTTTTGTGATTTTGGATTTGTGTTTAGATATTCAGAGAGAAGAAAAAAGTGTGCAGAAAGCGATTAGAGAAG CTGCTAAGAGGAATGATATGGGCTCTGCAAAGGTTGGTTTGCTTTTGATTTTACTTTTTGCTAGTGCGGGTGAGTGTCTG TTTGATTTTCAGTTAGGAAGTCCATTTGAAGCATTGGAATTCGAGATCACGATTTCCAATGCACATTCAGCCAACGGAAT GCACTTGTTGGGTTGAGTTTTTTGTTTTAATTTTTCCTTTTTTTGGGGAGTGCTGTGCAATAATTTTGACTTTGAGGGAT TGGTAAATGTGTGTCGAATGTGATTGCCATGATGGGCATGTTTATAGAAGGGGGAACATAGGGAATTGAACTAAGATTTT GTGAACTTGCAAGTGTCAATTGTGAGTTTTGTTGGTCTTGGTCCTATAGGCAGGAAGAAGTTTTAATGGTTTCTTCATGT GTAGGATACATTTTCATCTTGTTTAGTGTATGTGGGTATGCTGGATATTATTTGGCTGCTTATGAGATATTTTAATGTAA GTCCCAGATGCTCAGGATAGGATGATAACATAAAAGGTGCTGATAGTGTGTTCATGGGGGAATAAACCTAGAATATGCTG ATTGTAAGCGATTTTTAGATGGGGGTTGTCAAAATATTTAAGGTAGAATTGAATGGTAATGGAGCTAAAAGAATCTGTGG ATTAGGGTGGACTTCTTTCTTGTTAGGATTGGTCATAGTACTCGGTAAACTAACAATAAAGCTATTTGTGGTTTTTTCCT AGTGTATGACCTTTTAGGCAACTATTTTTTATGCCTTTGAGATATCAGGGTTTGAAAGAGTGAAGTTAGTCTTTTGAGAA TTTTTGGCTTATTATGATGTTTGTGCAACTTGCAGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGT CTTCATGAAAATAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGTTGGTAGGTTCTGCTGTGTTTTATT AACCATAATTTAGCCACATAGCAAATTAAACATGTCCAAGATGACTGCTTGTGCCTGATCCCAGTTGTTTGATAATTGAT GCCTAACTCAAACTTTGATATGCTTCAATCCCTCTTGTTTGCTAAATTGTATGGGTAAACTGCTCAACATTGGATTTGTT TATGATCAATTTTTTGGTTGGAGGAAAATATCAACTGACGATTTGCTGCCATGGTCCTTAGCTTTTCCCCAGGGTAGGGA GGGGAGAATTGACTGGGGTGTTTTTTTGGTATGCACTATTTAGGTAAGTTTGAATTTTGTCCTGTGGGCCATGTAGTGTT AACCGTAACCCAGTAGAAGCTCCAGGATTTATAAATTACAAGGAATGACCAAAACATTGGAATAATAAGAAGAAAAATCC GTTATTTGACAAATATCAAGCCTTCTTATAATCATAAGTGCATAACTGAACTTGACTAGCAAGTAAGCAATCTTCATGGA CTTGGCTAATCCATGTAGCTTTGATATGACTCATCACCTACAACTTCCTTAAATTTTATTTTCTTTAAACAAGTAAACTA AATCCCTGAAAATAAATTCATATGACAATCACAAATGAAAACTATTAAAACTTCAACTTAATCACTGCATGATCTAGATT ATGAGATTGTTTTTTGGGGCGTCTTATGTGTCGGATCGCATGTATGATCAAAACTTAGTGGGATTGATCTGAGATCTTTG ATCTTGATTGCCAAATCGGAATGCCATGCAATCATTGTTTTGAATTCCTGGTTCTTATTTCATGACCCCGTTTGATAACC CAGATATTTAGGGGAACTTCTTAACCCTTCAGATGAGAATCTTCCCCTCTCATTCTACAAACCCTAATCAAACACTCCAC CCTCTCGTCTTTCCCAATCAAAAGCCCTAATTGCAGCTCACAGTACCCTTGCGCATAAATCTGTCATCCACCTTCTGTCG TCTCACATCCTGTGCATCCCAACAAAGCGTGGAACTCTTGCATCTCTGTCAGTGTTCAGTGGTCTCTGTCCTCTCTGTTT ATGTTTTATTTTTCAAGAAAACATGACTTCAGTTCATGTTGGATGCTCCTAGAGTGCGGAGTGATGTGGGCTAGAAACAT GGTGTTTCTGTTTATGGTGATGCAAGAAAAGTCAAATGTAAATACTGTGAAAAGGAGGTAACAGGCGGCTTTTATTGATC AAAACATCTTTGGAAAGGAATAAAGGACTTTGGAGCTTGCGTTTCCTGAGTACAAGAATAGAGACTGGGTGAAGTCATGA ATGAAGTAGAGGCCTACCATTCCCTGGTCTTCAAGAAGAAAGGATAGTAGGAGACTTGCCATCCCTCCTTTTCATATTTT TTTTCCACTATTTCCTTTAGTTTATTTCTTTATATGAAGGACCAGATGATTGTCTAGAAAGGATGGTAGTACACTTTCAA GAGGTGGCTAAGATTGGCAGTCAACTTACTGATTTCAAAAGTCAAGCAAAGGTTTTTGGTTGTGTGGTAGCTCCACTTGG ACTTGAAAACAAAACTCCACCATAGTGATGGGAATCTTATGGTGACAAACATCCATAGCTGCAAAGCTGGACTATATGTG TATTGAGCTTGGCATGTAATTCCTCCAGCTGTAAGGGTAATTGGAGTGCCTTCGAGATGGTAAAATATTTGGATTTATGA AATGAACTATATCCTAGTAAAAGGGATCATATGTTTATTCATTTTGTAATTGTTTAGGTCCACCACACCAGTAAAAGAAA CCTTACAAAGTAGAAAACCATGTTGTATTTGTAATGGCTAAGTTAAAATTGGTGCTGAAGGAGCAACCTAGGAAAGAAGA TAACTTTACCATTGAGTTTCTAATGGCGATTCGTTAGTAGAGTGATCAAAACTTGGATTTGAATTTGGATGCTCCAACTG AAGACAATTTGGTTCAAGTTGAAGATGTCAATGCTAGTGGTGGTAGAGGTGGTGCACTTGTGGATGATTTGGAGGTTCCT AATGCTGGTGGTGGTGAAGTTGATGAAGGTGGAGGTACCATTAATCAAGATAAAAGATCATGTGGAGGATGACTATTGTG ACTGGGGCCTTAGATATTTGCTAGACTTGAATTTCAGTTGAGTGGTGAAAAATTTATGTTGTGACTGGTCATGAGTTGTA TTGGATGTTATGCTTATGATTTTTCAATTTAATGATGTGATTTAGAGATTATTTTCCTTATCTATGTATGCATATGTATA TGTTAAGTATAAGACAGTGTTATCAAATAGCGGCCATAGCGGATTTTTGGCCAATCGCGACGCCGCTATTCCCGCTATTT CTGCTATTCGCCGCCAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGCGATCGCGATTTGATAACA CTAAGTATAACATTGCATTCTTGGTAGGACCTTACAATTTATGTTATGATTGTTGTACAATCGTGCTATGATCTTGCAAA TTATAATCTTGTACCCCCCCCCCCCCCCTTCTCAGTTTTATGTAAAACCTCGATTTTGACAATATCGGTTGTAATTGGCA TACCCTTGGTGGTGAATCATTATGGGTATACTGTCGGGAGGAAATTGTATTCTCCAATTTATAAACTTAGTGATGACTTT AAATGAAAACAGTAAGAGTGGGGAAAGGGAGTGAGAGTTTGAGGGTTTTAAGCTAAGTCATGTTTTGTCCTGTTCAGCTT TCCTCATCTTCAGTATTTCTTACTTGTCCTGACAGTCTGACACAATATCTCTAGTGTGACAAATATTATGTAATGTTTTT GCTGTACCTGTTTTTATTGAATAGTTATGTGTAATATTTAGATCAATCATTTGTTGTTTTAGCTTCAGATTCGTTTGCAA TTAGTCATCGTGATAGATGAGTTATTACAGTTTTGTTCTTCGGAAATTCATGATTTGGTTGCTTTTGCAGCAATTGCTCG TACTGTGGGGCATCTATCTAAGAGTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAATGGCTGTGA CAATGCAAGAATTCAGCAAAGAAATGACAAAGGTATGTTGCAATAGGACCACTCTTTTTTCTCCTCTCTTCTCTCGGTGG TTGCAAAAGATAGTTGCATGGTAGTTATCGGGAATGTTGTCTCTTTCAGGCAGGCGTTATTGAGGAAATGGTGAATGATG CTGTCGACTCAGCACTAGATTCCGAGGACATTGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCT GGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAGGAAAGAGAAGGTGAGGCAACCTGCTCAAAGCGTTAGAGCCGCAGA GGAGGTATGTGCAATTCATTTCCCTTGTAACAAGTCTCACCCCTGTCTCAGAGTACACTAATTATGGAATGCATTGTTAT AATTTGTAGGAAGAGGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGT TAGGTCATAAAAAAGTTCCCAGTTTTGCATCCTCTACATTGTACCCAGGTATATTTTAAGCATGGTAGTCAAAATCACCA AATCGCTAAATCGCAAGGGAGATGTTGACATGTTTGTATCCTATTTGTAATATTCAGATTGGAACAGACAATTCCCTATT AATGGGAAAGAGAAAACTGACTGGGATGGCAGTTTGTATGTAAATTACACTAAAATCTTGGGGTGTATCAAATCATCAAT ATATAGATTTTCATCTGGATTTTCTGTAAAAGTCATTGTTCATCATCACTAGCCATTAATCTTTCTACCATGATTTCTCA TGTAGTCTTAAACCTTATCGCTTGCTCATAAAGCTGCATTTGATTAAATTATGCATAGAGAACCAATATTATGACACAAC TGAGAGGTTGAATCAGGATAACAACATCAATGTCATCTCAGATCATCATTTTCACTACAACAAAATGTACATAATTCTTT GATCCTAAAAAGCTTGCATCTTTGTTCAATCAAAAAGTAAAATGTCTAGTTTCTCTTGCAAGGGAAATCACATGCTTTTC TCGTTTATGATATGAATATTATCGGAATCTGGGAATTAAGCCAAAGAATCTTGACACAAAGCTCCTACTATAAAGCTATA GCTTTGGAATTACTAACAACTAACCACTAACATTTGTCTATAAAAAAAAACAACGCAGAACATAAATGTTGTTTTTAT
CDS sequence (LotjaGi3g1v0485800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAGGTGATAAACATTCTGAAACCAAAGCCAAATCCACAGCAACTGCTGAGGGATTGGCAACGCAAGCTTCGCCA AGAGTGCCGCAACGTTGAGCGCCAAATTCGCGATATTCAGAGAGAAGAAAAAAGTGTGCAGAAAGCGATTAGAGAAGCTG CTAAGAGGAATGATATGGGCTCTGCAAAGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTCAT GAAAATAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGTTGCAATTGCTCGTACTGTGGGGCATCTATC TAAGAGTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAATGGCTGTGACAATGCAAGAATTCAGCA AAGAAATGACAAAGGCAGGCGTTATTGAGGAAATGGTGAATGATGCTGTCGACTCAGCACTAGATTCCGAGGACATTGAA GATGAGATAGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCTGGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAG GAAAGAGAAGGTGAGGCAACCTGCTCAAAGCGTTAGAGCCGCAGAGGAGGAAGAGGCTATAGCTGAGGGTGTTGATGATG AAGAAGAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGTTAGGTCATAA
Protein sequence (LotjaGi3g1v0485800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKVINILKPKPNPQQLLRDWQRKLRQECRNVERQIRDIQREEKSVQKAIREAAKRNDMGSAKALAKELVRSRKTVNRLH ENKAQLNSISMHLGESVAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKEMTKAGVIEEMVNDAVDSALDSEDIE DEIEEEVDKVLTAIAGETAAELPEAVRKEKVRQPAQSVRAAEEEEAIAEGVDDEEEMEEIRARLAKVRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 229 | 227 | 1.8E-135 | – | |
| PANTHER | 3 | 229 | 227 | 1.8E-135 | – | |
| Pfam | 21 | 188 | 168 | 1.2E-30 | ||
| Coils | 22 | 56 | 35 | - | – | |
| MobiDBLite | 185 | 205 | 21 | - | – | |
| MobiDBLite | 185 | 217 | 33 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi3g1v0485800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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