Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0485800 |
| Transcript ID | LotjaGi3g1v0485800.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar protein sorting-associated protein 2-like protein 1; TAIR: AT5G22950.1 SNF7 family protein; Swiss-Prot: sp|Q9FFB3|VP241_ARATH Vacuolar protein sorting-associated protein 24 homolog 1; TrEMBL-Plants: tr|I3SMU3|I3SMU3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0485800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90328263..90333000) extracted from Lotus japonicus Gifu genome v1.2.
ATGGAGAAGGTGATAAACATTCTGAAACCAAAGCCAAATCCACAGCAACTGCTGAGGGATTGGCAACGCAAGCTTCGCCA AGAGTGCCGCAACGTTGAGCGCCAAATTCGCGGTAATGTTCTGTTAAACCCCTGATTAATCTCTTGTTGTTCTGATTATC TTTTGGTTTTGTCTGATTTTTGTGATTTTGGATTTGTGTTTAGATATTCAGAGAGAAGAAAAAAGTGTGCAGAAAGCGAT TAGAGAAGCTGCTAAGAGGAATGATATGGGCTCTGCAAAGGTTGGTTTGCTTTTGATTTTACTTTTTGCTAGTGCGGGTG AGTGTCTGTTTGATTTTCAGTTAGGAAGTCCATTTGAAGCATTGGAATTCGAGATCACGATTTCCAATGCACATTCAGCC AACGGAATGCACTTGTTGGGTTGAGTTTTTTGTTTTAATTTTTCCTTTTTTTGGGGAGTGCTGTGCAATAATTTTGACTT TGAGGGATTGGTAAATGTGTGTCGAATGTGATTGCCATGATGGGCATGTTTATAGAAGGGGGAACATAGGGAATTGAACT AAGATTTTGTGAACTTGCAAGTGTCAATTGTGAGTTTTGTTGGTCTTGGTCCTATAGGCAGGAAGAAGTTTTAATGGTTT CTTCATGTGTAGGATACATTTTCATCTTGTTTAGTGTATGTGGGTATGCTGGATATTATTTGGCTGCTTATGAGATATTT TAATGTAAGTCCCAGATGCTCAGGATAGGATGATAACATAAAAGGTGCTGATAGTGTGTTCATGGGGGAATAAACCTAGA ATATGCTGATTGTAAGCGATTTTTAGATGGGGGTTGTCAAAATATTTAAGGTAGAATTGAATGGTAATGGAGCTAAAAGA ATCTGTGGATTAGGGTGGACTTCTTTCTTGTTAGGATTGGTCATAGTACTCGGTAAACTAACAATAAAGCTATTTGTGGT TTTTTCCTAGTGTATGACCTTTTAGGCAACTATTTTTTATGCCTTTGAGATATCAGGGTTTGAAAGAGTGAAGTTAGTCT TTTGAGAATTTTTGGCTTATTATGATGTTTGTGCAACTTGCAGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGG TGAACCGTCTTCATGAAAATAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGTTGGTAGGTTCTGCTGT GTTTTATTAACCATAATTTAGCCACATAGCAAATTAAACATGTCCAAGATGACTGCTTGTGCCTGATCCCAGTTGTTTGA TAATTGATGCCTAACTCAAACTTTGATATGCTTCAATCCCTCTTGTTTGCTAAATTGTATGGGTAAACTGCTCAACATTG GATTTGTTTATGATCAATTTTTTGGTTGGAGGAAAATATCAACTGACGATTTGCTGCCATGGTCCTTAGCTTTTCCCCAG GGTAGGGAGGGGAGAATTGACTGGGGTGTTTTTTTGGTATGCACTATTTAGGTAAGTTTGAATTTTGTCCTGTGGGCCAT GTAGTGTTAACCGTAACCCAGTAGAAGCTCCAGGATTTATAAATTACAAGGAATGACCAAAACATTGGAATAATAAGAAG AAAAATCCGTTATTTGACAAATATCAAGCCTTCTTATAATCATAAGTGCATAACTGAACTTGACTAGCAAGTAAGCAATC TTCATGGACTTGGCTAATCCATGTAGCTTTGATATGACTCATCACCTACAACTTCCTTAAATTTTATTTTCTTTAAACAA GTAAACTAAATCCCTGAAAATAAATTCATATGACAATCACAAATGAAAACTATTAAAACTTCAACTTAATCACTGCATGA TCTAGATTATGAGATTGTTTTTTGGGGCGTCTTATGTGTCGGATCGCATGTATGATCAAAACTTAGTGGGATTGATCTGA GATCTTTGATCTTGATTGCCAAATCGGAATGCCATGCAATCATTGTTTTGAATTCCTGGTTCTTATTTCATGACCCCGTT TGATAACCCAGATATTTAGGGGAACTTCTTAACCCTTCAGATGAGAATCTTCCCCTCTCATTCTACAAACCCTAATCAAA CACTCCACCCTCTCGTCTTTCCCAATCAAAAGCCCTAATTGCAGCTCACAGTACCCTTGCGCATAAATCTGTCATCCACC TTCTGTCGTCTCACATCCTGTGCATCCCAACAAAGCGTGGAACTCTTGCATCTCTGTCAGTGTTCAGTGGTCTCTGTCCT CTCTGTTTATGTTTTATTTTTCAAGAAAACATGACTTCAGTTCATGTTGGATGCTCCTAGAGTGCGGAGTGATGTGGGCT AGAAACATGGTGTTTCTGTTTATGGTGATGCAAGAAAAGTCAAATGTAAATACTGTGAAAAGGAGGTAACAGGCGGCTTT TATTGATCAAAACATCTTTGGAAAGGAATAAAGGACTTTGGAGCTTGCGTTTCCTGAGTACAAGAATAGAGACTGGGTGA AGTCATGAATGAAGTAGAGGCCTACCATTCCCTGGTCTTCAAGAAGAAAGGATAGTAGGAGACTTGCCATCCCTCCTTTT CATATTTTTTTTCCACTATTTCCTTTAGTTTATTTCTTTATATGAAGGACCAGATGATTGTCTAGAAAGGATGGTAGTAC ACTTTCAAGAGGTGGCTAAGATTGGCAGTCAACTTACTGATTTCAAAAGTCAAGCAAAGGTTTTTGGTTGTGTGGTAGCT CCACTTGGACTTGAAAACAAAACTCCACCATAGTGATGGGAATCTTATGGTGACAAACATCCATAGCTGCAAAGCTGGAC TATATGTGTATTGAGCTTGGCATGTAATTCCTCCAGCTGTAAGGGTAATTGGAGTGCCTTCGAGATGGTAAAATATTTGG ATTTATGAAATGAACTATATCCTAGTAAAAGGGATCATATGTTTATTCATTTTGTAATTGTTTAGGTCCACCACACCAGT AAAAGAAACCTTACAAAGTAGAAAACCATGTTGTATTTGTAATGGCTAAGTTAAAATTGGTGCTGAAGGAGCAACCTAGG AAAGAAGATAACTTTACCATTGAGTTTCTAATGGCGATTCGTTAGTAGAGTGATCAAAACTTGGATTTGAATTTGGATGC TCCAACTGAAGACAATTTGGTTCAAGTTGAAGATGTCAATGCTAGTGGTGGTAGAGGTGGTGCACTTGTGGATGATTTGG AGGTTCCTAATGCTGGTGGTGGTGAAGTTGATGAAGGTGGAGGTACCATTAATCAAGATAAAAGATCATGTGGAGGATGA CTATTGTGACTGGGGCCTTAGATATTTGCTAGACTTGAATTTCAGTTGAGTGGTGAAAAATTTATGTTGTGACTGGTCAT GAGTTGTATTGGATGTTATGCTTATGATTTTTCAATTTAATGATGTGATTTAGAGATTATTTTCCTTATCTATGTATGCA TATGTATATGTTAAGTATAAGACAGTGTTATCAAATAGCGGCCATAGCGGATTTTTGGCCAATCGCGACGCCGCTATTCC CGCTATTTCTGCTATTCGCCGCCAAATAGCGGCCGAAATAGCGGATTTTTGGCTCACCGCGATGGTCCGCGATCGCGATT TGATAACACTAAGTATAACATTGCATTCTTGGTAGGACCTTACAATTTATGTTATGATTGTTGTACAATCGTGCTATGAT CTTGCAAATTATAATCTTGTACCCCCCCCCCCCCCCTTCTCAGTTTTATGTAAAACCTCGATTTTGACAATATCGGTTGT AATTGGCATACCCTTGGTGGTGAATCATTATGGGTATACTGTCGGGAGGAAATTGTATTCTCCAATTTATAAACTTAGTG ATGACTTTAAATGAAAACAGTAAGAGTGGGGAAAGGGAGTGAGAGTTTGAGGGTTTTAAGCTAAGTCATGTTTTGTCCTG TTCAGCTTTCCTCATCTTCAGTATTTCTTACTTGTCCTGACAGTCTGACACAATATCTCTAGTGTGACAAATATTATGTA ATGTTTTTGCTGTACCTGTTTTTATTGAATAGTTATGTGTAATATTTAGATCAATCATTTGTTGTTTTAGCTTCAGATTC GTTTGCAATTAGTCATCGTGATAGATGAGTTATTACAGTTTTGTTCTTCGGAAATTCATGATTTGGTTGCTTTTGCAGCA ATTGCTCGTACTGTGGGGCATCTATCTAAGAGTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAAT GGCTGTGACAATGCAAGAATTCAGCAAAGAAATGACAAAGGTATGTTGCAATAGGACCACTCTTTTTTCTCCTCTCTTCT CTCGGTGGTTGCAAAAGATAGTTGCATGGTAGTTATCGGGAATGTTGTCTCTTTCAGGCAGGCGTTATTGAGGAAATGGT GAATGATGCTGTCGACTCAGCACTAGATTCCGAGGACATTGAAGATGAGATAGAAGAAGAAGTTGATAAAGTCTTAACTG CTATAGCTGGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAGGAAAGAGAAGGTGAGGCAACCTGCTCAAAGCGTTAGA GCCGCAGAGGAGGTATGTGCAATTCATTTCCCTTGTAACAAGTCTCACCCCTGTCTCAGAGTACACTAATTATGGAATGC ATTGTTATAATTTGTAGGAAGAGGCTATAGCTGAGGGTGTTGATGATGAAGAAGAAATGGAAGAAATAAGGGCCAGACTT GCTAAAGTTAGGTCATAA
CDS sequence (LotjaGi3g1v0485800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATATGGGCTCTGCAAAGGTTGGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTCATGAAAA TAAGGCACAATTGAATTCAATATCAATGCATCTTGGAGAGAGTGCAGCAATTGCTCGTACTGTGGGGCATCTATCTAAGA GTGCTGAGGTTATGAAGCTTGTTAATGACCTTATGAAGGCTCCTCAAATGGCTGTGACAATGCAAGAATTCAGCAAAGAA ATGACAAAGGCAGGCGTTATTGAGGAAATGGTGAATGATGCTGTCGACTCAGCACTAGATTCCGAGGACATTGAAGATGA GATAGAAGAAGAAGTTGATAAAGTCTTAACTGCTATAGCTGGTGAGACAGCTGCAGAACTTCCTGAAGCCGTGAGGAAAG AGAAGGTGAGGCAACCTGCTCAAAGCGTTAGAGCCGCAGAGGAGGAAGAGGCTATAGCTGAGGGTGTTGATGATGAAGAA GAAATGGAAGAAATAAGGGCCAGACTTGCTAAAGTTAGGTCATAA
Protein sequence (LotjaGi3g1v0485800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIWALQRLALAKELVRSRKTVNRLHENKAQLNSISMHLGESAAIARTVGHLSKSAEVMKLVNDLMKAPQMAVTMQEFSKE MTKAGVIEEMVNDAVDSALDSEDIEDEIEEEVDKVLTAIAGETAAELPEAVRKEKVRQPAQSVRAAEEEEAIAEGVDDEE EMEEIRARLAKVRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 8 | 133 | 126 | 5.3E-22 | ||
| PANTHER | 9 | 174 | 166 | 6.3E-95 | – | |
| PANTHER | 9 | 174 | 166 | 6.3E-95 | – | |
| MobiDBLite | 130 | 162 | 33 | - | – | |
| MobiDBLite | 130 | 150 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Vacuolar transport | The directed movement of substances into, out of or within a vacuole. |
Expression pattern of LotjaGi3g1v0485800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…