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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0487100 |
| Transcript ID | LotjaGi3g1v0487100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Heavy metal-associated protein; TAIR: AT5G60800.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9FJH5|HIP3_ARATH Heavy metal-associated isoprenylated plant protein 3; TrEMBL-Plants: tr|I3T5V5|I3T5V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0487100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:90469937..90473754) extracted from Lotus japonicus Gifu genome v1.2.
CTAGTAGCCCAAAGAACAAAACACAAACAAAAAGAAGAAAGACAACACCCACATAAAACAAACCCAAGCAAGAGGCAGAA CCAAACATTGATAGCCCAAAACCCAATCCCACAGACAATGAGACACATTACAGATTTTCCTAGCAAGAAGCAAGAAGTTT CTTGCTCATTGCTTATTGCTTAGTCAAAACAAAGGTGTGAAAGAAGGAAAAAGGAAAGAAAAGAAAAACCAAGAGTGTGG GTCCATTCCTCATACTAACATGTACGCGCATGAACCATGTTCATTGTTCATTTGCTCATGACATGCCATATATAAATACC ATTACATCACACATAGTCCTACTCAATTCAATTCAATTCAATTTTTAGAGTACTCCAAGAGATACCACTACTACTAATCA AACCACTCTTTCTTCTCTTCTCTTTCTCCTTGCGTGTTTCAAGAGTCACAACAATTAATGGGCGCGGTAAACCACACACA CTATATCACTCACTTCTTCACTGTCCTGTTTTCTCTGTTTCATGAATGCTAACTTGTAGTACTACCATGTTGTTGATGAT GTTGCAGAAGAAGATCCATACCGACGGCGGCGAAAACCACGATGCCGGAAAGAAAGACGACACCACCACCACCGTGGTCT TGAAAGTCGACATGCATTGCGAGGGTTGCGCTTCCAAAATCGTCAAAAACCTTCGCGCTTTCAAAGGTTTCTACTCTTTT TTTTGTACATTGTTAACAAGAATGTTTATTCAGGAGAAAATCGATCTGGGTTTTGATTTTCATCTAAATGGGTGTGTGTT TTTGTTACTTGAAGGTGTGGAGACGGTGAAGGCGGAGAGCAACACCGGGAAGGTGACAGTTTCCGGCAAAGTGGACCCCA CAAAGTTGAGGGATAGCCTGGCGGAGAAGATAAAGAAGAAGGTGGAGCTGGTGTCTCCGCAGCCGAAGAAGGAGAAGGAG AAGGCGGAGAACAAAGACAAAGACACTGAAACCAACAACAAAGCAGAGAAGAAAACTGAAGAGAAGAAAATCAACAAAGA CAAACAGGTTCATCAATTTTCTTCACTGGTCCCCCCAGTTTTCCACTCTCTAATTAAATTCTCTCTGTCACTGCCAGCCT GGGATGTTCTTCTTTTTTTTAATAGAATTTTGATTGTTTATTTATTTAAGACAAGTTAATGCACATTTTGCTGAATTTTT TATTTATAATTTGTTTGGCTCTTGATCTTATTATTGATTTTTGTTCAATGTAACAGGCGGTGACTACGGCGGTTCTTAAG GTGCCACTGCACTGCCAGGGATGCATTGACAGGATTGGCAAGTTTGTGTTGAAAACCAAAGGTGTGTACTTACTTCCTTT GTGAGAAATGAGAAATTAGAATCAATTCTACTTGCTAGAATTAATTAGAACTAGTTAGACAGTGTTTGATTTTCAGTTTG GAAGTGGATTTAGGGCATTGAGATTGAAATTGCACATTCCAATGCCCCAAATGTGATGTGAAAGATGTTTTCGCAAGCAC TTAGATGATGTTTGAATAATTGAATGTACCAGTAAATTAGATTGACTTCATGGATAAAGAGTTAGATGTATCATGTATAC TTGCCATAGTAAGTATTTGCTTCTGCCCTTAAATATAATCAATTTTAAGTTTTCCTTAAACATAATCAATTTTAAAATTT TATGACTGAATTTCATAATGTTACCTAATAAAAACACTAATGATTTTGGGACTTTTTGTTCTCTTTGTGATGTAGTGATT TAATGCATATTTAGAAATGCTTCAACTAATATATTGGGGTCATAATTGACAACCAATATATTGATCTAAAGTTAAAAATT AAAATCAACTTTAGAAAAAAACTTCTCTAAACAGTTTTTGGGGTCATAACAAATTCTTAAAAATGGAAAAACTAGACTAA TCCAAACATGTTATTAGCTAATTTGACATGATTATGGTTTTGGTTTGGGTGCAGGAGTTGAAGAAATGTCCATGGACAAG GAAAAGGATACGGTGACAGTGAAGGGGACAATGGAAGTGAAAGCACTTGTGGGGAATCTGACAGAGAGGCTGAGGAAGAA GGTTGAGGTGGTCCCTCCAAAGAAAGACAAGGACAATGACAACAAGGAAGAAGGTGCTGGTGGTGGCAAGAAGAAGAACA AGGGCAATGGTGGTGGTGAAGGAGGAGGAGATAATAATGAGAAAGATGAGGGGGTAGATGGCAAGTTAATAGAACACAAC ATGAGGGGATATTTGGCTCCTGCTGCAGCATTTGGGTTTGGTGGTTATGGTTATAATAATGGGTATGGATATGGACCCTA TGCTGGTGGCAACATTGGTGGCGGCTATAACTATGGACCGCCAGGACCAGTTCATCCGGAGCAGTTTCATCACTTTCAGT TAATGCATGCACAACAACCACCACCTCACCAAATGTTCAGTGATGAGAATCCGAATGCTTGTTCTGTCATGTGATGATGA GGTGTCAAAGCTTTCATTCAATTGGGTTATGATGACGGTCATTTCAGGACAGGGGAAAAAAGAGTACTAGAAAGTAGTAA CTAGAGGCTAGATAAGAAAAACAAAAGTAGAGTCTTTCTATATTCCTTTATCACTTTGTTAATCTTTCTTGAAATTCCAC GGATGCTTTTGATATGTGTTTGTGCTAGTAAGAAAAGGGTTTTGATGTGATTAAATTAACCAATAGTTTTGACATTATGC CTCTAACTTACTTATAATATAGTTAGAAGCATGTCCATTTTCAATTTAGTAAGTGAAGTATAGGCTAAGAGTGGTGTGAA GGTAGTGTTTCTATATGGTAATGCCAATTTCAGAATTTGTTATGAGCTAATGAATAATGTAAATGATAATATGGAAGATT CTTTCTCCAGTTGGTTATAATTTGTTTACACCTGTCGTGGATAGAAGTTGCTGCCTATGTTCCTATAAATTAATGATTGT ATTTGGAATTTGGAAATATGTCTGGCCTCTGCTTGTCCTTATTAGGTGTCCTATGCTATGCCCTCAATGTATGTTGGTGT GTGGATGCACTCATACATACGCTTGTTGTTACAAGTTTCTTCTTCTCTCTGTCCTTGCTTTCAAGTTTAAACCTTTAATT TGTCTCCTTCATCAACTAGGTTTGTTGGGGGTTGGTTTAAACCTGTCCTTTCTCAGCTTTATCATTTGTCCTACATGTTA AAATTTAAATGCTCTTCAATTTGGCTCTTTCCTTGTTATTTTCCAATGACCCCAATGAAAATGCTACTTTGCTATCCTTC CTTATCTATTTGTTTTCTTCTGTGGCTGTGCATGTGCAATTTAATTCGGTAACCTAGGCTGATTTTAACCTAAACTCCAG TGCATTCATGAGGTGAGGATAGCTTTTGCTTTCTTCATGTGGGGCTAAGTTTGTGAAATATATGGGAGTAAAGACTGATT TTATGGGCCAACTAAATAAAAAGATGATAAAAGTTTCAATTTGGTGGTTACAATTTCAGCAACCGGAGATTTATGTCCGG AGTCCAAAGTTTAGGCCAAGCGGATTTGGACGAGAGACCTCATCACCACGGGCAACCTCATCTTTACCGACGACTTGATC TCATCTACACGGATGATCTCAACTTCAAGAACGATCTCTTTTTCATGGGTGATTGTTTCTTTATGAGTTACATCATCACG TGATTGCCAAAGAGCGATTGTAGTTTAAAATTTTTGTATTAAATGGATCAAAGTACACTCCCGGATACCTGACACACATA GCCATATGGGTAGAAGAAGTTACTTAATGAGTTATGGTTTTGCTTGTATATAGAGAGG
CDS sequence (LotjaGi3g1v0487100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGCGAAGAAGATCCATACCGACGGCGGCGAAAACCACGATGCCGGAAAGAAAGACGACACCACCACCACCGTGGT CTTGAAAGTCGACATGCATTGCGAGGGTTGCGCTTCCAAAATCGTCAAAAACCTTCGCGCTTTCAAAGGTGTGGAGACGG TGAAGGCGGAGAGCAACACCGGGAAGGTGACAGTTTCCGGCAAAGTGGACCCCACAAAGTTGAGGGATAGCCTGGCGGAG AAGATAAAGAAGAAGGTGGAGCTGGTGTCTCCGCAGCCGAAGAAGGAGAAGGAGAAGGCGGAGAACAAAGACAAAGACAC TGAAACCAACAACAAAGCAGAGAAGAAAACTGAAGAGAAGAAAATCAACAAAGACAAACAGGCGGTGACTACGGCGGTTC TTAAGGTGCCACTGCACTGCCAGGGATGCATTGACAGGATTGGCAAGTTTGTGTTGAAAACCAAAGGAGTTGAAGAAATG TCCATGGACAAGGAAAAGGATACGGTGACAGTGAAGGGGACAATGGAAGTGAAAGCACTTGTGGGGAATCTGACAGAGAG GCTGAGGAAGAAGGTTGAGGTGGTCCCTCCAAAGAAAGACAAGGACAATGACAACAAGGAAGAAGGTGCTGGTGGTGGCA AGAAGAAGAACAAGGGCAATGGTGGTGGTGAAGGAGGAGGAGATAATAATGAGAAAGATGAGGGGGTAGATGGCAAGTTA ATAGAACACAACATGAGGGGATATTTGGCTCCTGCTGCAGCATTTGGGTTTGGTGGTTATGGTTATAATAATGGGTATGG ATATGGACCCTATGCTGGTGGCAACATTGGTGGCGGCTATAACTATGGACCGCCAGGACCAGTTCATCCGGAGCAGTTTC ATCACTTTCAGTTAATGCATGCACAACAACCACCACCTCACCAAATGTTCAGTGATGAGAATCCGAATGCTTGTTCTGTC ATGTGA
Protein sequence (LotjaGi3g1v0487100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGAKKIHTDGGENHDAGKKDDTTTTVVLKVDMHCEGCASKIVKNLRAFKGVETVKAESNTGKVTVSGKVDPTKLRDSLAE KIKKKVELVSPQPKKEKEKAENKDKDTETNNKAEKKTEEKKINKDKQAVTTAVLKVPLHCQGCIDRIGKFVLKTKGVEEM SMDKEKDTVTVKGTMEVKALVGNLTERLRKKVEVVPPKKDKDNDNKEEGAGGGKKKNKGNGGGEGGGDNNEKDEGVDGKL IEHNMRGYLAPAAAFGFGGYGYNNGYGYGPYAGGNIGGGYNYGPPGPVHPEQFHHFQLMHAQQPPPHQMFSDENPNACSV M
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 321 | 313 | 1.3E-108 | – | |
| PANTHER | 9 | 321 | 313 | 1.3E-108 | – | |
| Gene3D | 21 | 90 | 70 | 7.9E-18 | – | |
| SUPERFAMILY | 23 | 88 | 66 | 1.96E-12 | ||
| ProSiteProfiles | 24 | 80 | 57 | 9.462 | ||
| CDD | 27 | 84 | 58 | 1.50968E-7 | ||
| Pfam | 28 | 85 | 58 | 9.4E-14 | ||
| MobiDBLite | 87 | 125 | 39 | - | – | |
| Coils | 97 | 117 | 21 | - | – | |
| Gene3D | 127 | 195 | 69 | 1.9E-12 | – | |
| SUPERFAMILY | 129 | 185 | 57 | 7.59E-9 | ||
| CDD | 133 | 173 | 41 | 7.74786E-4 | ||
| Pfam | 134 | 193 | 60 | 5.4E-9 | ||
| MobiDBLite | 191 | 235 | 45 | - | – | |
| MobiDBLite | 191 | 214 | 24 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion binding | Interacting selectively and non-covalently with any metal ion. |
Expression pattern of LotjaGi3g1v0487100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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