Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0487100.2

Overview

Field Value
Gene ID LotjaGi3g1v0487100
Transcript ID LotjaGi3g1v0487100.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Heavy metal-associated protein; TAIR: AT5G60800.1 Heavy metal transport/detoxification superfamily protein; Swiss-Prot: sp|Q9FJH5|HIP3_ARATH Heavy metal-associated isoprenylated plant protein 3; TrEMBL-Plants: tr|I3T5V5|I3T5V5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0487100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:90470032..90473311) extracted from Lotus japonicus Gifu genome v1.2.

CCAAAACCCAATCCCACAGACAATGAGACACATTACAGATTTTCCTAGCAAGAAGCAAGAAGTTTCTTGCTCATTGCTTA TTGCTTAGTCAAAACAAAGGTGTGAAAGAAGGAAAAAGGAAAGAAAAGAAAAACCAAGAGTGTGGGTCCATTCCTCATAC TAACATGTACGCGCATGAACCATGTTCATTGTTCATTTGCTCATGACATGCCATATATAAATACCATTACATCACACATA GTCCTACTCAATTCAATTCAATTCAATTTTTAGAGTACTCCAAGAGATACCACTACTACTAATCAAACCACTCTTTCTTC TCTTCTCTTTCTCCTTGCGTGTTTCAAGAGTCACAACAATTAATGGGCGCGGTAAACCACACACACTATATCACTCACTT CTTCACTGTCCTGTTTTCTCTGTTTCATGAATGCTAACTTGTAGTACTACCATGTTGTTGATGATGTTGCAGAAGAAGAT CCATACCGACGGCGGCGAAAACCACGATGCCGGAAAGAAAGACGACACCACCACCACCGTGGTCTTGAAAGTCGACATGC ATTGCGAGGGTTGCGCTTCCAAAATCGTCAAAAACCTTCGCGCTTTCAAAGGTTTCTACTCTTTTTTTTGTACATTGTTA ACAAGAATGTTTATTCAGGAGAAAATCGATCTGGGTTTTGATTTTCATCTAAATGGGTGTGTGTTTTTGTTACTTGAAGG TGTGGAGACGGTGAAGGCGGAGAGCAACACCGGGAAGGTGACAGTTTCCGGCAAAGTGGACCCCACAAAGTTGAGGGATA GCCTGGCGGAGAAGATAAAGAAGAAGGTGGAGCTGGTGTCTCCGCAGCCGAAGAAGGAGAAGGAGAAGGCGGAGAACAAA GACAAAGACACTGAAACCAACAACAAAGCAGAGAAGAAAACTGAAGAGAAGAAAATCAACAAAGACAAACAGGTTCATCA ATTTTCTTCACTGGTCCCCCCAGTTTTCCACTCTCTAATTAAATTCTCTCTGTCACTGCCAGCCTGGGATGTTCTTCTTT TTTTTAATAGAATTTTGATTGTTTATTTATTTAAGACAAGTTAATGCACATTTTGCTGAATTTTTTATTTATAATTTGTT TGGCTCTTGATCTTATTATTGATTTTTGTTCAATGTAACAGGCGGTGACTACGGCGGTTCTTAAGGTGCCACTGCACTGC CAGGGATGCATTGACAGGATTGGCAAGTTTGTGTTGAAAACCAAAGGTGTGTACTTACTTCCTTTGTGAGAAATGAGAAA TTAGAATCAATTCTACTTGCTAGAATTAATTAGAACTAGTTAGACAGTGTTTGATTTTCAGTTTGGAAGTGGATTTAGGG CATTGAGATTGAAATTGCACATTCCAATGCCCCAAATGTGATGTGAAAGATGTTTTCGCAAGCACTTAGATGATGTTTGA ATAATTGAATGTACCAGTAAATTAGATTGACTTCATGGATAAAGAGTTAGATGTATCATGTATACTTGCCATAGTAAGTA TTTGCTTCTGCCCTTAAATATAATCAATTTTAAGTTTTCCTTAAACATAATCAATTTTAAAATTTTATGACTGAATTTCA TAATGTTACCTAATAAAAACACTAATGATTTTGGGACTTTTTGTTCTCTTTGTGATGTAGTGATTTAATGCATATTTAGA AATGCTTCAACTAATATATTGGGGTCATAATTGACAACCAATATATTGATCTAAAGTTAAAAATTAAAATCAACTTTAGA AAAAAACTTCTCTAAACAGTTTTTGGGGTCATAACAAATTCTTAAAAATGGAAAAACTAGACTAATCCAAACATGTTATT AGCTAATTTGACATGATTATGGTTTTGGTTTGGGTGCAGGAGTTGAAGAAATGTCCATGGACAAGGAAAAGGATACGGTG ACAGTGAAGGGGACAATGGAAGTGAAAGCACTTGTGGGGAATCTGACAGAGAGGCTGAGGAAGAAGGTTGAGGTGGTCCC TCCAAAGAAAGACAAGGACAATGACAACAAGGAAGAAGGTGCTGGTGGTGGCAAGAAGAAGAACAAGGGCAATGGTGGTG GTGAAGGAGGAGGAGATAATAATGAGAAAGATGAGGGGGTAGATGGCAAGTTAATAGAACACAACATGAGGGGATATTTG GCTCCTGCTGCAGCATTTGGGTTTGGTGGTTATGGTTATAATAATGGGTATGGATATGGACCCTATGCTGGTGGCAACAT TGGTGGCGGCTATAACTATGGACCGCCAGGACCAGTTCATCCGGAGCAGTTTCATCACTTTCAGTTAATGCATGCACAAC AACCACCACCTCACCAAATGTTCAGTGATGAGAATCCGAATGCTTGTTCTGTCATGTGATGATGAGGTGTCAAAGCTTTC ATTCAATTGGGTTATGATGACGGTCATTTCAGGACAGGGGAAAAAAGAGTACTAGAAAGTAGTAACTAGAGGCTAGATAA GAAAAACAAAAGTAGAGTCTTTCTATATTCCTTTATCACTTTGTTAATCTTTCTTGAAATTCCACGGATGCTTTTGATAT GTGTTTGTGCTAGTAAGAAAAGGGTTTTGATGTGATTAAATTAACCAATAGTTTTGACATTATGCCTCTAACTTACTTAT AATATAGTTAGAAGCATGTCCATTTTCAATTTAGTAAGTGAAGTATAGGCTAAGAGTGGTGTGAAGGTAGTGTTTCTATA TGGTAATGCCAATTTCAGAATTTGTTATGAGCTAATGAATAATGTAAATGATAATATGGAAGATTCTTTCTCCAGTTGGT TATAATTTGTTTACACCTGTCGTGGATAGAAGTTGCTGCCTATGTTCCTATAAATTAATGATTGTATTTGGAATTTGGAA ATATGTCTGGCCTCTGCTTGTCCTTATTAGGTGTCCTATGCTATGCCCTCAATGTATGTTGGTGTGTGGATGCACTCATA CATACGCTTGTTGTTACAAGTTTCTTCTTCTCTCTGTCCTTGCTTTCAAGTTTAAACCTTTAATTTGTCTCCTTCATCAA CTAGGTTTGTTGGGGGTTGGTTTAAACCTGTCCTTTCTCAGCTTTATCATTTGTCCTACATGTTAAAATTTAAATGCTCT TCAATTTGGCTCTTTCCTTGTTATTTTCCAATGACCCCAATGAAAATGCTACTTTGCTATCCTTCCTTATCTATTTGTTT TCTTCTGTGGCTGTGCATGTGCAATTTAATTCGGTAACCTAGGCTGATTTTAACCTAAACTCCAGTGCATTCATGAGGTG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0487100.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGCTAACTTGTAGTACTACCATGTTGTTGATGATGTTGCAGAAGAAGATCCATACCGACGGCGGCGAAAACCACGATGC CGGAAAGAAAGACGACACCACCACCACCGTGGTCTTGAAAGTCGACATGCATTGCGAGGGTTGCGCTTCCAAAATCGTCA AAAACCTTCGCGCTTTCAAAGGTGTGGAGACGGTGAAGGCGGAGAGCAACACCGGGAAGGTGACAGTTTCCGGCAAAGTG GACCCCACAAAGTTGAGGGATAGCCTGGCGGAGAAGATAAAGAAGAAGGTGGAGCTGGTGTCTCCGCAGCCGAAGAAGGA GAAGGAGAAGGCGGAGAACAAAGACAAAGACACTGAAACCAACAACAAAGCAGAGAAGAAAACTGAAGAGAAGAAAATCA ACAAAGACAAACAGGCGGTGACTACGGCGGTTCTTAAGGTGCCACTGCACTGCCAGGGATGCATTGACAGGATTGGCAAG TTTGTGTTGAAAACCAAAGGAGTTGAAGAAATGTCCATGGACAAGGAAAAGGATACGGTGACAGTGAAGGGGACAATGGA AGTGAAAGCACTTGTGGGGAATCTGACAGAGAGGCTGAGGAAGAAGGTTGAGGTGGTCCCTCCAAAGAAAGACAAGGACA ATGACAACAAGGAAGAAGGTGCTGGTGGTGGCAAGAAGAAGAACAAGGGCAATGGTGGTGGTGAAGGAGGAGGAGATAAT AATGAGAAAGATGAGGGGGTAGATGGCAAGTTAATAGAACACAACATGAGGGGATATTTGGCTCCTGCTGCAGCATTTGG GTTTGGTGGTTATGGTTATAATAATGGGTATGGATATGGACCCTATGCTGGTGGCAACATTGGTGGCGGCTATAACTATG GACCGCCAGGACCAGTTCATCCGGAGCAGTTTCATCACTTTCAGTTAATGCATGCACAACAACCACCACCTCACCAAATG TTCAGTGATGAGAATCCGAATGCTTGTTCTGTCATGTGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0487100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLTCSTTMLLMMLQKKIHTDGGENHDAGKKDDTTTTVVLKVDMHCEGCASKIVKNLRAFKGVETVKAESNTGKVTVSGKV DPTKLRDSLAEKIKKKVELVSPQPKKEKEKAENKDKDTETNNKAEKKTEEKKINKDKQAVTTAVLKVPLHCQGCIDRIGK FVLKTKGVEEMSMDKEKDTVTVKGTMEVKALVGNLTERLRKKVEVVPPKKDKDNDNKEEGAGGGKKKNKGNGGGEGGGDN NEKDEGVDGKLIEHNMRGYLAPAAAFGFGGYGYNNGYGYGPYAGGNIGGGYNYGPPGPVHPEQFHHFQLMHAQQPPPHQM FSDENPNACSVM
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46413
20 332 313 7.0E-109 –
PANTHER
PTHR46413:SF5
20 332 313 7.0E-109 –
Gene3D
G3DSA:3.30.70.100
32 101 70 8.4E-18 –
SUPERFAMILY
SSF55008
34 99 66 2.09E-12
IPR036163
ProSiteProfiles
PS50846
35 91 57 9.462
IPR006121
CDD
cd00371
38 95 58 1.09007E-7
IPR006121
Pfam
PF00403
39 96 58 9.9E-14
IPR006121
MobiDBLite
mobidb-lite
98 136 39 - –
Coils
Coil
108 128 21 - –
Gene3D
G3DSA:3.30.70.100
138 206 69 2.0E-12 –
SUPERFAMILY
SSF55008
140 196 57 8.12E-9
IPR036163
CDD
cd00371
144 184 41 6.15456E-4
IPR006121
Pfam
PF00403
145 204 60 5.7E-9
IPR006121
MobiDBLite
mobidb-lite
202 225 24 - –
MobiDBLite
mobidb-lite
202 246 45 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0030001
Biological process Metal ion transport The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0046872
Molecular function Metal ion binding Interacting selectively and non-covalently with any metal ion.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0487100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…