Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0493100 |
| Transcript ID | LotjaGi3g1v0493100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding family protein; TAIR: AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B'; TrEMBL-Plants: tr|V7AIS3|V7AIS3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0493100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91137315..91145452) extracted from Lotus japonicus Gifu genome v1.2.
CTAAATCTTATGAGAGTTTATTACAACAATGTAAACCTAACATGAGGCCACTCCAATGTCTCCCATATAATATTGGCAGT TAATATCTAACTAAATAATAGATTTTTTATTGAATTTTTTTTATCTAACTAAATAATAGATGGTAGATCAATGGAGTAAT TATAAACCTCAGTGAATATTAGTGCAATTTGCCAAAAATCAAAATACTTTTAGGGCGCCAACTTGAGTTGACACAACTGA CCGCGACTTTCAAGTTTAACTCTATCATCCCCATAAGTTGAGAGTTCAAATCGGGAGCAAGCTTCTTCCAACCTCCTCAG CATGTTACTAACGCCCTAGTTACTACTTACTAGTCTACAAATGTTTTTTTTAAGCTAATAGGAATAGTTTTTATTTTTTC AACAATTGAGACATGTAGAGCCCAGCCCATTAGGATGCTATAAAGCAGGCTCAATCAGTTCGGTGCGAAAGTGAAAGTGA AAGTGAAGTTTTCAGTTCAGAATGGGAACTCCGAGCGGTGAAGTACGAACCCTTTGGGTCGGAGATTTACAGTACTGGGT CGACGAAAACTACCTCTCTCAGTGCTTCGCACACACCGGCGATGTTCTCTCCGTCAAGATCATCCGCAACAAGATCACCG GCCAACCGGAGGGCTACGGCTTCGTCGAGTTCGTCTCCCACGCCGCCGCCGAACGCGTTCTCCACACCTACAACGGAACC CTCATGCCCGGAACCGAACAACCCTTCAGACTCAACTGGGCTTCTTCCGGCGGCGGCGGCGACGCCGGCCCTGACCACTC CATCTTCGTCGGCGATCTTGCCCCTGACGTCACTGATTTCCTCCTCCAGGAAACTTTTCGGACTCATTACCCTTCTGTTA GAGGCGCCAAGGTCGTCACCGACCCCGTCACCGGAAGGTCCAAGGGTTACGGGTTTGTCAAATTCTCCGACGAGGCGCAG AGGAACCGCGCCATGACTGAAATGAACGGCGTTTATTGCTCCTCTCGTCCAATGCGTATCAGCGCTGCAACGCCGAAGAA AACCCCTTCTTTTCAACAGCAATATGCTCCAACCAAAGGTTCTTGAATTTCCCATGAGTTTAAGGCTCATCCTATGGTTA ATTATGCTTATTATTTATGCGCATAGTTGAATTATGTGTTTAAGCCCGTTTGGAAGAGCTTATTTGACTTTGTCTGATAG CATAAGCGCTTGTGTAAGTGTTTGAGAGAGCTTATGCAAACAGTTTATGATGCTGTTTTGAGCTTATTTTCATAAGCTAG TCAGGATAGCTTATGAAAAAAGAGCTTATGCTTATATATAGCTTATTTTCAATTTATTTCAATAAATTGTTAAAAATAGC TTATGGCGCTTACCATAAGCTTTTAATTAAGCTGTTTTCCCAAACGGGGCCTTAATGTTTTGTTGTTAATTAAGCTTAGA AGAGGCACTAATGGTGAGTCTCTTTTCTTTTGCAGCAATGTATCAATATCCGGCATACACTGCCCCAGTTGCCCCAGTGA GTGTAGTTGCACCAGAGAATGATGTGAATAATACTACTGTAAGTCAAATAGATCACAGAACTATGCTTTTTGTGATTTCT GTTGTTTTTTTATTTGTTCCCAACTTGACGATTGACCTCACGGTAACAACACAAGTCTTTTCAGTGCACTTTGACCTCCT GGGAAGTTTTCCCGGAAAGTGCGTGAGTGAGGACAAAGCGCACAAGACTTCTGTCGTAACCGTGAGGCCAGTCGTTAGAT CAAGATGTTACATTGGATTTGGAGTTTGAACTCATCTTTTGGTTTGTATTGTAGGTTTGTGTTGGTAATTTGGATCTTAA TGTAACGGAGGAGGAGCTTAAGCAAACGTTTGTGCAGTGTGGGGATGTTGCGTCTGTCAAAGTTCATGCTGGCAAAGGAT ATGGTTTTGTTCAATTTGGGACTAGGTTTTCTGTTTTTATTCCCTTTCCTTAATTTTTAATATGTGAATTGTGAATCATC TTTATGGGGTTGCTCTAATGTTTTTGAAACTAAAAGGGAAATGGTATGCTTTTGACTGTTGCTACCCCTTTTTTCTTTTC CAAGGCAATAAGTGTTTCATGTGGCTTGATGTTACTCTGCATCTTGCGAGGTCTTCCATCAATCTTATTTTCTTCTTCTA CTATTCCTTTTCTTTATCCTATTATTAATTGGGTTTTTAACCTCTACCATGGTTTATGTCTGTAGAGCATCTGCTGAGGA TGCTATTCAGAGGATGCAGGGGAAGATGATAGGTCAGCAAGTGGTCCAGATCTCTTGGGGTAGTAGCTTAACTGCTAGAC AGGTGATTTTGCCATAGCAAATGGTTCATTTCTTGATGTTGATTATAATTAGTTCGTCATTCTGTGACTACTGCACTCTT GTAAAATATCATGCGTTTTAATTTCAAGAAATCGTACAATGTATATAACTACTACTTAACTACATGTCTTCCATTATTTC TATGTAGTAACGAGTAATATAAGTTCATGCACGGTTCTAGTATAGATTTGACGGCCTTCATTAGATTTTGCCGCGTTTAG TGGTTTGGTCGTTGAATGACATGTTTAGAAAATGAATCTAGACTCTACCTGACAATTATGAGATTATGATGCCAAGAGGT TGGCTCAAATGGTATGAGTGGACAATGTTGATGAAAAAGACTTGAGGTTTAATTTCTGCTCCAGGTCTTTCATTAGTACT CTGTAGGTTATCAGCCATCAGATATCCTGACCTGGGATTAGAGCAACTTCCCCTTCCTGTAAACTTTCATTCACCGTAAC GTAGGTCATGAGATTGTTATGATATGTGGTAAAATAAGGAAACATACGATAAGAATGAAAAGATCAGCTCAGTTAAAATT AAGGTGAGACAGTAAAATTTTAGAGGGTAACATGTGCATCCCCAATGTGTGAATGAATATGAATGAGTATTATTATCTCT GATCTGCTCAATAAGATTAGCTCTAATCAAAATTTTGAACGGAACAATTCCAGGATGTACCTGGTGGCTGGGGGCAGCCT GTGGATCCAAATCAATGGAATGCCTACTATGCATATGGACAAGGTTATGAAGCATATGCTTATGGAGCTACTCAAGATCC TTCCTCATATGCATATGGTGCATATGCTGGTTTTGCACAATATCCTCAACAGGTAAAGATCTTAAGTTTAGTTTGCATAA TAGTTCCTGCGGCTTAGAACAACTTTATCGGGCAACTCATGGATATTGATTTTATAATTTTCAGGTTGAAGGTGCTCAAG ACATGTCAGCTGTGTCTATGCCTACAGAGGAGCTGTATGATCCCATGGCAATGCCTGATGTCGATAAGTAAGCTTTCCCC CCCTTCTCCCTCTCCTTTTTCCAATCAAAAGTTGGCTTGATTAAATATCCGCTAGCCACTTCAAGGTAAAAAGTGAAGTT AACGCTTATAGATTGGGATAAAAGTTTGTTACCATTGCAGTCAACTGGTATCCAAACGAACTAATATGTGTATAGGCTTG ATCAGATGTTTTTGTGTATTGGCCCCTGGTGTTTTTATGACTGAATTTTCATTGCTTTGCCAGGTTAAATACTGCATATG TTTCAATACATGGAAGCGCCATTTTAGGACGGTCCCTCTGGCAGAAAACCTCGCCGTTTTTGCAGCAAGCTTAGGATCTA TTTGTACTACATGATCAATCTTAGGCATCAACTCTTCAAAATATAGCCTCCAGTAGACATAGCTTAATTGGATGGACTTC AACCTATGTTAGAAACTGCGAGTGAAGATCTGGCAAAGGTGAGGCAAGGCCTCCTACTCATGGAACTTGTTGGCTTCTAA GTTGCCTTAGGTGGAGTTTGTTGTACTTTATTTCAGGCAGTTTCAAAACTGCTGTAGAATATGACTGTGTCTTTGTTATA TCATTTATTTATATTTGTCTGCTTTGCAATGAATACTAAACGGAAACTCATTTTCATATGGAAAAAGAACATCAAAGGAG CTTTCTACATATTATATATCGTCCAAAACAACGACTTTTTGTTACCAGTTGTAGAAAAGAAAGAAACTACATAGAAATCA AAATATGAGGAAATAGATATGCGTAGATACCTTTTTTCCCGCTTAGATGCACTGTAAGTCTGTAATTCAAACATGCACTT AAGAACAAGTCAAGTTGAATTAATCTCGAAACAGTTTCACCATTGTTTAGCCGTAGACCTTTTGATGAATTGCTGTTCAC CAAATTTTTTCTTTTTCAATATGGGTAGAATAGTATGATAATTAGATAAGTGAGAATATCAATTAAGACAGGCGGGATAT TTTTATTTTTATTTAGTTTAGGATTTGATTTATAGTCTTTAAGTATCTTCCTGGCATAATCTAAGCCAAACGACACTTAC AAGCAAAGGGTATCAAACCTGAAATCCAAACTAAACAGACCAAAGACTAAGCAAACCACAACAAACAAACAAGTAATCTC TATTCAAACTTGACCTGCTCTCAAAGCGAAAATTTAATCTTAGAATTTTTATGTCGCTTTTAGCCTAGCCGACTTTGCCG GTACCGCAGATCAATTGCATCTGCTTCAAGGCTTTCACCAAAGGGTGCTCATGAGACACCACCACAAGAACAGAGAAGAG CAGAGGGCAAGCCATAGGAGTGAGATGGAGTGCGCAACGAAACAGGACCAAGGGGAGAGGCAGTGGCCCACGACCGCGGG CGGTGATCTCGGAGGGTGGCTGGTGGCTGACGGTCGCGGATGGTGGTGGAACGACCGGTGGTTGCAGATCTGGTCTGGCG AAGCCAAGGGTCGCCGATCTGATGAAAGGGGAGGAGAGAAAGGTAGGACGCCGAAGGTCTGGTCGCTGACGGCGAGTTTG ATTGTGGGCTCAGATCTGGTAGTGCCTGGAAGAGGGAGGACGGTGGTGGCAGTGGAGGGATGGTGGTGGTGGTGATGAGA GGACGGTGGTGGTGGTGGTGATGACCAAAAGCAAGGAGAAAGCAAAATAAAACCCCACTTATTTGGGTAACTAAATATGA TCTGCTTGTTGATGATCTCTTCAAGCCCAGAAGGACAAGGAGCAACCCCAGATAATCATAATTGTAAGAGACCTCAAGCA GTTGAAACTTGTTTAGTGTCCATGGAGGATACCTATACCAAAAACCACTCAGGAAACTTCTTTTGAGAATCCCCTTCTGA TGGCTGAATGTGTTAAAGGAGAACTTCCCATGATAATTGCCAAACCCACTTTCACCCACTCCTCCAAACGGGAGAGAATC CACTGCATACTACACACAACAAAAATATAGAACAGGTCATGTATATGAATAGGAACTAGCTGTATCCCAATTTGATGTGT GTAAAAAGATTATCAGTAAACACTGGACTGGGGAGGCTATTACTTGTAGAATTGCATCGTTGAAAGTTAAACTGCCAGAT GATGTTTCAGATCTCATTCTTTTCTGCAGTGATTCAATTTTGGTGAAAGCATAAAGGGCTAGAGGCTTAGGCCTGGAGTT TATGAATTTAATACTGTCCTCAATCTTCTCAACCTGCAAATTTTTAATGGAAAAAAAAGGAACTCATAAGGCTAACAAGA AAAATAGCAAAATTCTAGAGTCTCATGTGTTTGCATTGCATGAGTTGAAACTCACAGTAATAATTGGAAGCAATGGGCCA AAAATTTCTTCTGACATGATTGCTGCATCAAGTGGGGGATCCACCAATATGGTTGGCTCAATAAATCTGCGTACATTTTA GCACATTTTCTAAGTATTTAGCAACTATTGTGAGGAAGTGTTGAATGCTTACAAGTTTTCTTCATCTATGGAGCCACCAT AAACCACAGATTCTTTGACCTTTTTATCAGTAAGAAGATTCTTCAATCTAAGGAAGTGTTGTTTATTAATTATCCTTGCA ATAGTGTTGGATTGTTTCGGGTTCTCTCCAAACATTTTCTTGATCCAGACCTTTATCAATTTCACCTAAACATAATATCA AGAAACACAGAGAAGTGAAAACTGGAAGGTGGCGCTTTCGTTGACAGAGTGAAAATGAAGCTGCAATTATGTGATTATAA ATAAAAAGATTTCTGTAAAGCCAAACAAATCCTTAAATATCAAGAGAGTTACCAGTGTTGAACAGAATCTATTTTCCACA AGTACATAGTCGATCGCAATGCATGTTTGACCAGCACATGACCCAAATTTCCCAAAAACAATCCGCTTCACAGCAACCTA TTGGTTCCCACAAAGTATCACTCTCTTAACCAAAATCAATAATCAACATAATAATAAACAAGGTGTTTATTTTTATACCA GTTAAATAAAATTTGAACGAAATTTCAACTCAATTCATAAGAAGAGTTTCATTTAGTTCTTGAGGGCTTGAGCCGCGCAT ACTGCAGTTTAAATTTAAGCGTCACATGAGTACTTCTCGTCCATTTTAGTCACACTTACTCAAGAGACATTGGTATGATG ACATGAACCACCAAGAATGAATCAACTCACCTCTAAATCCCAGGAAGATGAAAGGGAGTCAACAACTGCTGGGTTTTTCC CACCCAACTCCAGAGTGACAGGGGTCAGATGCTTCACAGCTGAAGACATTACAATCCGCCCCACACGCGCACTTCCTGAT AATAGTTTTTCAGATTCACAAAACTATCATCAAAAGCTATTACAATTACAAAACATGAATGAACAAGAAGATATAAAAAA GGGATCCTATTAACCTGTAAAGAATATTTTGTCCCATCTTTGCTGTAGTAGTAGCTCAGACTCCTGTGGTCCACCTTCAA TCACCTTAATGGCTTCACTGTCCAAGTAAGTGGCAAGAGTAGAGGCAAGTAGAGCAGAACATGAAGGAGTTAACTCTGAA GGCTTTAAGACTACTACATTCCCAGCAGTTACTGCTCCTATCAGTGGCTCTAGAGACAGTCCTGTGTTTGTTTTTCAAAT GATAGGTTCAATGTTGCTTCATATATATATTTAGCCCAATGAAGAAAGTAAGAAACCTCTTAATTAACTATAGAATATAG ATAGCCATGAACCATATTTGTTAATACTAACCAACAAGTATATAATATAACTCACCAAAAGGGTAATTCCAAGATGAAAT TATGAGGATGAGACCCAGAGGTTCAGGAACAACTTCTGCACTTGTTAGCAGTACTAACTTTGGTAATTTAGCCTATCATA ATGAATGTTTCATGATTAGTCAAACTTTGGTAATTTAGCCTATCATAATGAATGTTTCATGATTAGTCAATTGACATGTA TATATGCCGAAAGTCGGATTTTGGCTCCTCTAAGAGATTCATTTTAGGGGGTAAAGTGAGTTATCACAATCATTAATAAT GATTACTTATTTTGAAAAGTCACTAAAGATACTCAACTAATTATTGTGATGACTTACTTTATTCTCTAAAATGAATCTCT CATTTTAGAGGATTCACCCCTGGAAGTCATACTCATATAGACTCATATTTTCTTCAAAGGCTTATTTGCACTTTTGGTCC CTGATGTATCACCTTTATGCGATTTTCGTCCCCGATCTTTAAAACGAGCGATTTTAATCCCAAACGTTTACATAATGTGC AATTTTGGTCTTGCCGTCAATTGAAGACGGAAAAAGCTGATGTGGCCCTTTTAAATGATGTGGCACCTCTAATTAATTTA AAAAAAAATATTAAATAAAAAAGTAAAATGTTTTTTAAAAATAATTTTCTTCTTTCTTCTTCATCTGCTCTCTTCTTTCT TCTTCTTCCTCCTCCTCCATAACACCACCCCACCACCATCTCCTCCTCTTTCTCTAAAACCCATAAAACCAGAGAAGAAG ATGCCACTGAGAAGAACCAGCAAACAAAAATAAAACCCAGAAACGCTGCACAGAAAAGACATAGAAACAAAGGAAAAACC CAGAACTAGCAAATTACGTACCTAGAACCAGGAAAGAAAAAAACCCAGAAAAAAACCCAGACTTCATCTTCTTCCCATCA TCATCATCTAAAGCACACCTAAAACAAACCCCCAAAACCAAAAAACATCGAACCCCCAAAAACCCAAACTTCATCTGTAG GTTTCTAATAAATAAGGATTTGTTCCTAACCACATGCTTTTCTACCCATATAGAAAAT
CDS sequence (LotjaGi3g1v0493100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAACTCCGAGCGGTGAAGTACGAACCCTTTGGGTCGGAGATTTACAGTACTGGGTCGACGAAAACTACCTCTCTCA GTGCTTCGCACACACCGGCGATGTTCTCTCCGTCAAGATCATCCGCAACAAGATCACCGGCCAACCGGAGGGCTACGGCT TCGTCGAGTTCGTCTCCCACGCCGCCGCCGAACGCGTTCTCCACACCTACAACGGAACCCTCATGCCCGGAACCGAACAA CCCTTCAGACTCAACTGGGCTTCTTCCGGCGGCGGCGGCGACGCCGGCCCTGACCACTCCATCTTCGTCGGCGATCTTGC CCCTGACGTCACTGATTTCCTCCTCCAGGAAACTTTTCGGACTCATTACCCTTCTGTTAGAGGCGCCAAGGTCGTCACCG ACCCCGTCACCGGAAGGTCCAAGGGTTACGGGTTTGTCAAATTCTCCGACGAGGCGCAGAGGAACCGCGCCATGACTGAA ATGAACGGCGTTTATTGCTCCTCTCGTCCAATGCGTATCAGCGCTGCAACGCCGAAGAAAACCCCTTCTTTTCAACAGCA ATATGCTCCAACCAAAGCAATGTATCAATATCCGGCATACACTGCCCCAGTTGCCCCAGTGAGTGTAGTTGCACCAGAGA ATGATGTGAATAATACTACTGTTTGTGTTGGTAATTTGGATCTTAATGTAACGGAGGAGGAGCTTAAGCAAACGTTTGTG CAGTGTGGGGATGTTGCGTCTGTCAAAGTTCATGCTGGCAAAGGATATGGTTTTGTTCAATTTGGGACTAGGTTTTCTGT TTTTATTCCCTTTCCTTAA
Protein sequence (LotjaGi3g1v0493100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGTPSGEVRTLWVGDLQYWVDENYLSQCFAHTGDVLSVKIIRNKITGQPEGYGFVEFVSHAAAERVLHTYNGTLMPGTEQ PFRLNWASSGGGGDAGPDHSIFVGDLAPDVTDFLLQETFRTHYPSVRGAKVVTDPVTGRSKGYGFVKFSDEAQRNRAMTE MNGVYCSSRPMRISAATPKKTPSFQQQYAPTKAMYQYPAYTAPVAPVSVVAPENDVNNTTVCVGNLDLNVTEEELKQTFV QCGDVASVKVHAGKGYGFVQFGTRFSVFIPFP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 264 | 260 | 1.1E-122 | – | |
| PANTHER | 5 | 264 | 260 | 1.1E-122 | – | |
| SUPERFAMILY | 6 | 90 | 85 | 2.71E-22 | ||
| Gene3D | 8 | 88 | 81 | 2.4E-25 | ||
| ProSiteProfiles | 9 | 89 | 81 | 15.784 | ||
| CDD | 10 | 86 | 77 | 7.3644E-48 | – | |
| SMART | 10 | 85 | 76 | 3.9E-15 | ||
| Pfam | 11 | 79 | 69 | 2.9E-14 | ||
| SUPERFAMILY | 97 | 263 | 167 | 1.44E-34 | ||
| Gene3D | 98 | 175 | 78 | 4.0E-23 | ||
| CDD | 99 | 177 | 79 | 1.67722E-51 | – | |
| ProSiteProfiles | 99 | 178 | 80 | 16.841 | ||
| SMART | 100 | 174 | 75 | 8.6E-20 | ||
| Pfam | 101 | 170 | 70 | 1.0E-15 | ||
| Gene3D | 207 | 267 | 61 | 3.1E-14 | ||
| ProSiteProfiles | 219 | 261 | 43 | 11.571 | ||
| SMART | 220 | 268 | 49 | 0.11 | ||
| Pfam | 221 | 263 | 43 | 4.1E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi3g1v0493100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…