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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0497400 |
Transcript ID | LotjaGi3g1v0497400.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Beta-glucosidase; TAIR: AT2G44480.1 beta glucosidase 17; Swiss-Prot: sp|B8AVF0|BGL12_ORYSI Beta-glucosidase 12; TrEMBL-Plants: tr|A0A072UVY4|A0A072UVY4_MEDTR Glycoside hydrolase family 1 protein; Found in the gene: LotjaGi3g1v0497400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91583373..91588014) extracted from Lotus japonicus Gifu genome v1.2.
GTTAGTTGATTAAGCTGAATCATCCTTAAAATTCGAAAAGAGGAGACATGTATCAGATTAACATGGCATCATTATGCAAA CTCTTTTACCTTTTGGGACTCGTTGCTAATTTCGTTCTTGTGATTACCAAATCGAATGTTGTTCATTGCACTGAAAATGT TGCTCCCACTCTTGATCTTGTTTCTTTGAACCGAAACAGTTTCCCTCCAGGCTTCATCTTTGGAGCTGGATCCTCCTCGT ACCAGGTATATTCAATTCGTAGTGTATGTTTATGTTTCTGTTCTGTTAAGCTCAACATTGATCCATGTTTGAGTTATGAC AAAAGTGTTGTTTTCTCTTGATGCTTGGATGTGTGGTTTCCAAATGAGCACTTAATTAACCATTTAACTAAGCTATTACT AATATATACCCTTTCCTATTTTAAAATAATTGCTCAGAAAGATAAAAAACATATGTTAAGAAATGCAATTAATATATATG GTTAACTTTATAATTATTTGTTTTCTTATTTTACCATTTAGAGTATGTTTTTATATGATTTTCTTTCTCTAAAGGAACCG TTGTTATGATGTTGATTATGTTGTGTGTGCAATATTTATAATTTATATTATGTGTATAGTTTGAAGGTGGAGCAATGGAA GGTGGTAGAGGGTCAAGTATATGGGATACCTTCACCCATAAATATCCAGGTCTCATGCTGAAATATTTTTTTGTCCTTAT TTTTTGTCCATTTTCACGTTTCTTAATTTGATTTGAATATACGAAACTATTTTTTTTTATCTTCACAAACATAATATTGA CAATATGCATATCTTGTATATGACATATGCAGAAAAGATAAAGGATAGAAGTAATGGAGATGTGGCCATTGACACGTATC ACAATTACAAGGTAATCCAAGAGTCTGATTTCTTTGTAGCGTACTCTTTCAAAGTATTTGTTTCTTCTTAGCTGCGCATG ATGCATTTTGAGTTGAATTGAAATTATAATAAATTAAATTAAATAAACTTCCTGAGTGGCTTCTGTTTATTTCAATTTTT TATTTTTGGAGAATGCAAAATATATTGTGGTCCTTATATATTACAGGAAGATGTTAAGATGATGAAAGATATGAACTTAG ATTCATACAGATTCTCCATATCTTGGTCAAGAATATTGCCGAGTAAGTCAAATGCTGATCGATCATTGACTATAGTTCTC ATTTAAATTTGACAATGTTGGATGGTCAGCATAATTTAATTAACCATTCAAAATCAATTTTTTTAATCAACTTGATATTT ATCCACAACAGAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAATGAGCTAT TGGCTAATGGTAAGATCCACAAACTCAATTGATTCAACTTATTTTTTTATATATATACTTTGACTTGATCTTGTCATATT CTTTTGCTTTCAGATGCTATTAGTAATACTAATTGATTAATTAAACATAAAAAACATTAATTTCAGGTCTAGAACCATTT GTGACTCTTTTTCATTGGGATCTTCCGCAAGCTTTAGAAGATGAGTATGGTGGCTTCTTAAGCCCTATCATAGTGTGAGT TTTAATTATATTATTCCAAAACATAGCTTATTTGTGCCGTTTGGTTTGAATTTGCCATCAATGCAAACATGAAAATACAC ATCCAAAGCATTAATAGTCACGCAAGATACAATTAATTCAAATGTTGATCGGCATTAAGTTCAATGTCAAACCAAACACA CACATTGCTTAGTAAATTGTTTAACACTTAATGGTTAATTTTCAGAAAAGATTTTCGAGACTATGCGGAGCTTTGCTTCA AGGAATTTGGCGATAGGGTGAAGCATTGGGTTACTTTGAATGAGCCATGGAGTTATAGCCAAAATAGCTACGCAATGGGG AGGTTTGCACCAGGTCGTTGTTCTGCATGGATGAACACAAATTGCACCGGTGGTGATTCAGCTGTAGAACCTTATTTGGT TTCACACTACCAACTTCTTGCTCATGCAGCTGTTGTTCGTGTGTACAAGACCAAATACCAGGTTTGTTACTTTCACATAA TCTCTGACCTTATGCTAAAACTCGAATTCTTTTATTAGAATAACGAGGGACGAAGGTAAAAAAAGCTCGAACTCTTTATA CCTCTTGATCATAAGGACTTTAAGAACTTTGATATCATGTCATGAATATACTGTCTCACAAAAGATCATCATGAATGATT TCATGTTATATTTCTAACTATTGTGATGTGCTCGTGGGTTTGTGTGGGCCCAAGAACTAGGAAAAGAATATAAGGATAAT TGTTGTTTTACAATTCTTTGTAAAAATAAAATAGTCAATAGTAAACTAAAATATTAAAACATTGCTCATATGCAGGCATC TCAGAAGGGTTTCATAGGCATAACCTTGTTAGCTCATTGGTACCTACCTCTCTCCGACACCAAATATGATCAAAAGGCTG CTGAAAGAGCAATGGACTTCATGTATGGATGGTAAGAGCTCGTCTCTCTCTCTCTCTCTCTGACTTATGATTCATCTTCA AAATACACATACATATTTAAGAAAAATGAGATATTGAATATGGGATAGAAATGAAAGAACTATACCTTAATGTAAATTTC TCCTTTTAGTAAGGCCTTGAATAGTTTGGTCATGGCTTTCAACAGTATATATTACTATTAAGTGTATTAAGTGTATGTCT TATAATCTTTCAACAATTGATTTTAAATGAAGAATCGAGTTTGGAGAGAAGCTTATGTTTGTAGCTTATGATTTTCAGAA TTAATTATGAGAAAAGAGAATTGATCCAAACATGCTAACTTTAATAATGAAAACTCTGTAATTTTAGAGTTAAGGATTTA TGCGTTTTTGGGAAAAAAAATTGAATTGAATTAATTGGTTTCTTCAGGTTTATGGATCCATTAACATTAGGAGAGTACCC CAAAAGCATGAGACATCATGTTGGAGCACGATTACCAAAGTTCACAACAGAGCAAGCTATGCTATTAAAAGGTTCATTTG ATTTTATTGGCCTAAATTATTACTCTTCAGCCTATGCCTCAGATGCACCTCAACTAAGAAATGCCAAACCTAGCTACTTG ACAGATTCATTGGTCAATCCTGCATGTAAGGAACCAATCCTCTACCCTTCTATCAGTTCTCTAAAATGCTTAAGTATATG TTGAATTTCATCATTGCTGATAATTAACAACTTGTATTTTGTGTTCATGATTAATTGCAGTTGAGCGTGATGGCAAACCC ATAGGTATTAAGGTATGCTCATTGTCACCTAAACTTGCAATTAACTACTTAACAAGTTTAATCCATTTGAAGAAAGTATC ATAAAACAAACCGTCTTTCAATAATTATGCAGGTTGCTTCTGATTGGTTATACGTTTATCCAAGAGGAATCCAAGATCTT TTGTTATACACCAAGGAAAAGTACAACAACCCTTTGATTTACATCACTGAAAATGGTATAAGAGTAAACACCTCTATGTA TATCATGTTTAGTTTATCCTTGAATGCAATATCATTGATTTAGACCAAAATTGATGTGGTCCAATCTGGTGTTTTCTTTT TTGTCTTACCAATTAAATTATGCCATGACATAATTTTATTGGTAAGACATTTAAACACTAAATCGAAACTAAATCAAAAC AGAGAATCTTCATCCCATGCATTGGAGTATGAGATCTTGTTAACTTTTTGTATTAAAGGTTTCTGACAATTTGCAATTTA ACTTCCAGGTATAAATGAATATAATGATCCAACACTTCCAGTTGAGGAATCACTCATGGATATATTCCGAATTGATTATC ATTATCGTCATCTCTTTTATCTTCGATCTGCAATTAGGTAGGTAGTCAATTACATCTATAACAGCTTGTTGAAATTTTCA TCATACAATAACACATTTTGATATATTTCATTTTAATTATATATGACAGAAACGGTGTGAATGTCAAGGGATATTATGTA TGGTCTTTGTTTGACAACTTTGAGTGGTCCTCTGGTTACACTGTACGATTTGGAATGACCTTTGTGGATTACAAAAATGG CTTGAAAAGATATGAGAAACTTTCTGCATTATGGTTCAAGGACTTCCTCAAAAGAGAAACTAGACTTTATGCTTCTAGTG AATAATATGATATTCATTCATTAAAAGTTATACTTGTAAGTAGTTATTTTTTTATGGACAAATGTTAGTTGTTAGTAAAT TAGCCTCTCCTTAGAGTTCAAACCCTGGACTCTTCACTCTTCATTTCCCTCAACCCGTATGTCCCCTATCTCTTATCACT TGAGTTAACCCTCGGAGACTTGTAAGTAGTTATTTATTTTAAAATTTTTTGATAAGGTCCTATTCGACCTGAAAGGGAAT AAAAAGTGGATGTGCAAATGTATATTGATGTCGTATTTTTTTTTTACATCGGATAGATAAATTACACCATGTAAGCTATC ATTCGGGAACATGGACCTCCCCCACTCAACTCACATGTTTCATAATTCTTACCACGCAAGCTATCATTTGGGAACATTGA TGTTGTATTTTTTTTGGTTACATTGATGTTGTATTTGATAGTTATTGATCTTACATTTGAAAATAAAAAAGTTAAATTTA CC
CDS sequence (LotjaGi3g1v0497400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATCAGATTAACATGGCATCATTATGCAAACTCTTTTACCTTTTGGGACTCGTTGCTAATTTCGTTCTTGTGATTAC CAAATCGAATGTTGTTCATTGCACTGAAAATGTTGCTCCCACTCTTGATCTTGTTTCTTTGAACCGAAACAGTTTCCCTC CAGGCTTCATCTTTGGAGCTGGATCCTCCTCGTACCAGTTTGAAGGTGGAGCAATGGAAGGTGGTAGAGGGTCAAGTATA TGGGATACCTTCACCCATAAATATCCAGAAAAGATAAAGGATAGAAGTAATGGAGATGTGGCCATTGACACGTATCACAA TTACAAGGAAGATGTTAAGATGATGAAAGATATGAACTTAGATTCATACAGATTCTCCATATCTTGGTCAAGAATATTGC CGAAAGGAAAGCTAAGTGGAGGTATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAATGAGCTATTGGCTAAT GGTCTAGAACCATTTGTGACTCTTTTTCATTGGGATCTTCCGCAAGCTTTAGAAGATGAGTATGGTGGCTTCTTAAGCCC TATCATAGTAAAAGATTTTCGAGACTATGCGGAGCTTTGCTTCAAGGAATTTGGCGATAGGGTGAAGCATTGGGTTACTT TGAATGAGCCATGGAGTTATAGCCAAAATAGCTACGCAATGGGGAGGTTTGCACCAGGTCGTTGTTCTGCATGGATGAAC ACAAATTGCACCGGTGGTGATTCAGCTGTAGAACCTTATTTGGTTTCACACTACCAACTTCTTGCTCATGCAGCTGTTGT TCGTGTGTACAAGACCAAATACCAGGCATCTCAGAAGGGTTTCATAGGCATAACCTTGTTAGCTCATTGGTACCTACCTC TCTCCGACACCAAATATGATCAAAAGGCTGCTGAAAGAGCAATGGACTTCATGTATGGATGGTTTATGGATCCATTAACA TTAGGAGAGTACCCCAAAAGCATGAGACATCATGTTGGAGCACGATTACCAAAGTTCACAACAGAGCAAGCTATGCTATT AAAAGGTTCATTTGATTTTATTGGCCTAAATTATTACTCTTCAGCCTATGCCTCAGATGCACCTCAACTAAGAAATGCCA AACCTAGCTACTTGACAGATTCATTGGTCAATCCTGCATTTGAGCGTGATGGCAAACCCATAGGTATTAAGGTTGCTTCT GATTGGTTATACGTTTATCCAAGAGGAATCCAAGATCTTTTGTTATACACCAAGGAAAAGTACAACAACCCTTTGATTTA CATCACTGAAAATGGTATAAATGAATATAATGATCCAACACTTCCAGTTGAGGAATCACTCATGGATATATTCCGAATTG ATTATCATTATCGTCATCTCTTTTATCTTCGATCTGCAATTAGAAACGGTGTGAATGTCAAGGGATATTATGTATGGTCT TTGTTTGACAACTTTGAGTGGTCCTCTGGTTACACTGTACGATTTGGAATGACCTTTGTGGATTACAAAAATGGCTTGAA AAGATATGAGAAACTTTCTGCATTATGGTTCAAGGACTTCCTCAAAAGAGAAACTAGACTTTATGCTTCTAGTGAATAA
Protein sequence (LotjaGi3g1v0497400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYQINMASLCKLFYLLGLVANFVLVITKSNVVHCTENVAPTLDLVSLNRNSFPPGFIFGAGSSSYQFEGGAMEGGRGSSI WDTFTHKYPEKIKDRSNGDVAIDTYHNYKEDVKMMKDMNLDSYRFSISWSRILPKGKLSGGINQEGINYYNNFINELLAN GLEPFVTLFHWDLPQALEDEYGGFLSPIIVKDFRDYAELCFKEFGDRVKHWVTLNEPWSYSQNSYAMGRFAPGRCSAWMN TNCTGGDSAVEPYLVSHYQLLAHAAVVRVYKTKYQASQKGFIGITLLAHWYLPLSDTKYDQKAAERAMDFMYGWFMDPLT LGEYPKSMRHHVGARLPKFTTEQAMLLKGSFDFIGLNYYSSAYASDAPQLRNAKPSYLTDSLVNPAFERDGKPIGIKVAS DWLYVYPRGIQDLLLYTKEKYNNPLIYITENGINEYNDPTLPVEESLMDIFRIDYHYRHLFYLRSAIRNGVNVKGYYVWS LFDNFEWSSGYTVRFGMTFVDYKNGLKRYEKLSALWFKDFLKRETRLYASSE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 11 | 11 | - | – | |
SignalP_EUK | 1 | 27 | 27 | - | – | |
TMHMM | 7 | 26 | 20 | - | – | |
Phobius | 12 | 31 | 20 | - | – | |
PANTHER | 24 | 531 | 508 | 0.0 | ||
PANTHER | 24 | 531 | 508 | 0.0 | – | |
Phobius | 32 | 532 | 501 | - | – | |
Gene3D | 37 | 523 | 487 | 7.5E-225 | – | |
SUPERFAMILY | 40 | 522 | 483 | 2.3E-189 | ||
Pfam | 49 | 524 | 476 | 2.9E-157 | ||
ProSitePatterns | 56 | 70 | 15 | - | ||
PRINTS | 350 | 364 | 15 | 1.6E-22 | ||
PRINTS | 426 | 434 | 9 | 1.6E-22 | ||
ProSitePatterns | 426 | 434 | 9 | - | ||
PRINTS | 449 | 460 | 12 | 1.6E-22 | ||
PRINTS | 470 | 487 | 18 | 1.6E-22 | ||
PRINTS | 494 | 506 | 13 | 1.6E-22 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of LotjaGi3g1v0497400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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