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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0497700 |
| Transcript ID | LotjaGi3g1v0497700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Gamma-secretase subunit APH1; TAIR: AT2G31440.1 gamma-secretase subunit APH1-like protein; Swiss-Prot: sp|Q8L9G7|APH1_ARATH Gamma-secretase subunit APH1-like; TrEMBL-Plants: tr|I3S664|I3S664_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0497700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:91642002..91646050) extracted from Lotus japonicus Gifu genome v1.2.
ACCGGTCCGGACCAAGGATCCGGTTCGAAAGAACGAACCCGAACCGGGTCGTTCCTGCAATTTTTGTCTTGAGTTTTCTT CCTTCAATGGAGAAAGGTGAGTGAAGCAGTGAAGAAAAGAGAAGAATGACAGTATCAGCAGGAATCGGTTACGCTCTGGT AGCACTAGGACCATCACTCTCCATCTTCATCTCCGTCATCTCCAAAAAACCCTTCCTCATTCTCACCGTTCTCTCCAGGT TCACTTCGATCTCAAAATTCACTTCGATCTCACTGCTTTTTGTTTCAATTGTTAGGGTTACTGTTACTGACTTCAAATTA TGCTGCTGATTCGGTTCAATTTGTGGCTTGTTGATGATGCAGCACGCTGTTATGGCTAATCAGCTTGATTGTACTGTCTG GAATTTGGAGGGGGTTTCTTCCACTGAGTACAACAGCTTGGTGGCCTTACGCGATTCTCATACTCTCTTCCATTGCTTTC CAAGAAGGGCTCAGGCTTTTCTTCTGGAAAATATATAAGTAAGCAAGGTTCAATTGCATCATCATCATTATTGTGTTGTG TGATTTTAGGAATTTTTACAATATCATGAAGAAATTGATGACATTATGCTGAAGCTGATTTTGTGTGTGGATGGATTGAT GTTTTTATTGTTTCCTCCCCTGTTGGTTGTTGTTGTGCAGGAGGTTAGAAGATATATTAGATGCTTTTGCTGACCGAGTT TCGAAACCGCATCTTTTCCTAACTGATAAGATGCTGATTGCCCTTGGTAAGAAAATGGAGGCTTTCTCTTCCTTAATATT GCATTTATTTCTAGAGAATTTGGTTGAGTAACTTTGAATGCGGATTGTTTTAAGTAATTGAAAATGTAGAGAATAAGTGA ATTTACCCGTGTTTGGATAGAGAATTTTAAAATCGTTGAGAATTTAAAATGCACGGAATTGTAATTGCATTAATTTAAAT CCTTGTATTTGCCACCATCAACCCTATCATTCACAACCGCCACCCTCACTCCCACAGCACCGACCACGAAGCTACGCTCT GCCACTACACCCATTTAGTTCTTCTTCTCTCGCTACAAGAACCAGTTAAGTCCCTGCTGTGAGGACCCTCACAGGTGCTG AGGTACAAATGGAGTAGGATGGTAGACAGGAAGAGGTACTGTCCTGAACAGGACGAGACACTCTAGTGTCGGGTTCCGAC ACTGCACTGCTACTGAATCTGTTAGAGAGGGAGAATTGGGTCTGTCAAAAGGAGGTATATGGGGTTTTCAGGAACATGGA CATTGTGTTCACCTGTGCAGAATTTTGGAAATTCTCACTGTAATGATGTTATTTTAAATTCCCTTTGTTTAGTTTAAAAT GAAATACCCGATTGAAATGCATCTTATTTTAAATTCTGTGTTTTGAATATCCAAACAAGGTATTTTGATGTGATTCATTT TAACTACCCTCTTTAATTACATTGCCTCCTAAAATAACTTCATCGAAACACACTGTTAGGGTAGGTATTGAGTGTCATAT GCTTAACAAAGCTAATAATATTGAAAATAGTAATTTATGTTTTTGATCTCTAATGTTTGGAAAAACATTCTTTGGGAACT GATTTGAGCTTATGTTACAACAGAAGTACTTAAAGTATCTTATGATATGCTCTTTTAAGCCGATTTCAATAAACTTCTCT ATATGCTTATGGATAAATGCTTTGTTTGCATAACTCTCATACGATAAAAGCTTATTGAATAAACATTTAATTTACTATCT GAAAAAAAATTTGTTTATCCAAAAGCACCCTAGTATGATTTTGCTTGCTTCTCGAACAATCTTGCTGATACTGCATACTC TTTTCCCCCTATCTGTTGGAATTTAACCAGATCCTTAATTGAATTACGATAAAATGAGTCATTTGTTAAATACTATTTAG AAAGGGAAATGGTTTATTTGATTTAGATATATATTATTTATAATAACCTCTGTTATTAATAGATTATCTGTTGCATATTT TTCACAGCTGGTGGTTTGGGCCATGGTGTAGCCCATGCTGTGTTCTTCTGCATCAGCCTATTAACTCCTGCATTTGGTCC AGCTACATATTTCGTTGACAGATGCTCGCAGGTTCCATTTTTCCTTCTTTCTGGTGAGATTTCCCTCACTGCTGGTTCCT ATATACATGTATGTGAATAGCATGGAATACTACTTCAGAATTTCGGAAACTTTTGTGCCTGAGGTTTATAACTGCAAATT TATTTGATTAATGTGAATCTATAGAGATGGGTTAGAGTTGATTATTGGAACATTGAGTTTGACTTTCCTATTAAGCCTCA GTTTTCGTCCTTAAACAACCATAGCTATACTTTTTGAAATTTGAAATTTGAATTATATAGAGATATTGCGTTTGAATATT TCATTTATTTTCTCAGATTTGTTCACCCTTTTTTTTATACATATTGCAGCACTTATTGGTCTTGCATTTGTCACGATTCA CACATTCTCAATGGTCATCGCGTTTAATGGGTATGCAGAGGGCAACAAAGTGGATCAATATTTTGTTCCCATTGTTCATT TTGTTGCAGGAGCAGTGGTAAGATCTCACACCTTGAAAAATATATTCTGCCCTATAATTTACAACATTAACTTGTAACTA GCCTTCTTTCTTTCTGTTGTTCCCTTACCTACATCAACATATTAGCTATTATCCAGCTAATATCTATAGCATTAAGCCAT GCATTGACCTCAGGAAAAAGCTGTTCGTCTGTGTCATTTTAGCTATACAATGAGCATGGTGAATTCCTTATTTATTTTAT TAGCAATCAAGCCAAACAAAGAATAGCAAGTCAACCTTGAATAGCTTGTAGATGACTCGGATTTCTGTGGACTTCTTTAC AGTGCAATTTGTTGTGTTGTTAAGTTAGCATTCTGTGAAACTTATCTGCTTGAATTTGGATAAAGTTCAGAAAGAATCAA AAGGACCCCTGGATATAAATATACTTTCAATTATTGTTGTTAATTTGGAATTTAATTATGATTTCTTTATGACATATCTT TTACTTCAATTATTGCTCAAATTTTTACCCGTTTCATTGACCTGATGTTTCCCTATTCAGACAATGGTAAATTTGGCACC TGGGGGTTGTACTGTTGGCATTCCTCTCCTTTACTTCGTAACGTTCTTGACCTTGATTCATTGTGGGAGGATGGCTTGGA GAAGATTGACAGAAAACTCAATCAGGCTGAGCAACTCTTAGTAGTAAGTGATAATCTTTTGTAAAAAGTCCTGTCTTAGA TTGCTTCAGTCCTCGCCATTCTGGTTGGAATGTGTAGAATTCCCATTTCTTTCATCGTCATTGGGTCAGGGTTATGGAGG TCTTGGTTGCACAAAAAGTTTAATGAAGTCTAGGACGTTTCATCATTTATGTTCAGGGAAAAAATGTAGATCAATCAGAG ATTCTTGTATACATGTTAAAATTTGAATTATGAAATTCTAAAATCCTTTTTTTCTTTCTCATTAATGTAAGATATTTAAT TAGATTTTTTTTGTTAATTTAATTCATAAAATGAAGTAAATATAAGAAACATACACACATGTAAGTTAGTTAGTTTGTAA TTTGTACGTATGTATGCAGATATTTGAATTCGATATGTATATATTAAAAGATAATTAATTTAAATGTGAATTTGATTTGC AGACACTAGTGGTTAATTTGAATTCTAGAAAAGAATCTAAAAAATAATACGGTTGTGTGGGGATTTTTTGAAAGGTCATG TGGTTGTTTGTGAGAAAGAGTAAATGAATACTTCATTCATGTTTAATGTGTAAAAGTTATCATATCCTATCATATCCTAT CCTGACCACCAAACGGGCCCTAAGTATATAGGATAGGATTTAAGTTATCATACAAAAATATGGAGTTCTTTTTCCCCTTT TATGTGTGGACCAAAGATATGCTCCGACCGATAATCGAGACTAATTCCCTTGAATTTGATATATTTAATTTGAGTACTTA ATTTCTAATGTATAAATTTAATTTAAATGTAAATCTTCACAAATAGCTG
CDS sequence (LotjaGi3g1v0497700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACAGTATCAGCAGGAATCGGTTACGCTCTGGTAGCACTAGGACCATCACTCTCCATCTTCATCTCCGTCATCTCCAA AAAACCCTTCCTCATTCTCACCGTTCTCTCCAGCACGCTGTTATGGCTAATCAGCTTGATTGTACTGTCTGGAATTTGGA GGGGGTTTCTTCCACTGAGTACAACAGCTTGGTGGCCTTACGCGATTCTCATACTCTCTTCCATTGCTTTCCAAGAAGGG CTCAGGCTTTTCTTCTGGAAAATATATAAGAGGTTAGAAGATATATTAGATGCTTTTGCTGACCGAGTTTCGAAACCGCA TCTTTTCCTAACTGATAAGATGCTGATTGCCCTTGCTGGTGGTTTGGGCCATGGTGTAGCCCATGCTGTGTTCTTCTGCA TCAGCCTATTAACTCCTGCATTTGGTCCAGCTACATATTTCGTTGACAGATGCTCGCAGGTTCCATTTTTCCTTCTTTCT GCACTTATTGGTCTTGCATTTGTCACGATTCACACATTCTCAATGGTCATCGCGTTTAATGGGTATGCAGAGGGCAACAA AGTGGATCAATATTTTGTTCCCATTGTTCATTTTGTTGCAGGAGCAGTGACAATGGTAAATTTGGCACCTGGGGGTTGTA CTGTTGGCATTCCTCTCCTTTACTTCGTAACGTTCTTGACCTTGATTCATTGTGGGAGGATGGCTTGGAGAAGATTGACA GAAAACTCAATCAGGCTGAGCAACTCTTAG
Protein sequence (LotjaGi3g1v0497700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTVSAGIGYALVALGPSLSIFISVISKKPFLILTVLSSTLLWLISLIVLSGIWRGFLPLSTTAWWPYAILILSSIAFQEG LRLFFWKIYKRLEDILDAFADRVSKPHLFLTDKMLIALAGGLGHGVAHAVFFCISLLTPAFGPATYFVDRCSQVPFFLLS ALIGLAFVTIHTFSMVIAFNGYAEGNKVDQYFVPIVHFVAGAVTMVNLAPGGCTVGIPLLYFVTFLTLIHCGRMAWRRLT ENSIRLSNS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 1.6E-91 | ||
| PANTHER | 1 | 243 | 243 | 1.6E-91 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| Pfam | 2 | 235 | 234 | 1.7E-57 | ||
| TMHMM | 5 | 24 | 20 | - | – | |
| Phobius | 6 | 25 | 20 | - | – | |
| Phobius | 26 | 29 | 4 | - | – | |
| Phobius | 30 | 52 | 23 | - | – | |
| TMHMM | 31 | 53 | 23 | - | – | |
| Phobius | 53 | 63 | 11 | - | – | |
| TMHMM | 63 | 85 | 23 | - | – | |
| Phobius | 64 | 85 | 22 | - | – | |
| Phobius | 86 | 114 | 29 | - | – | |
| Phobius | 115 | 137 | 23 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 138 | 156 | 19 | - | – | |
| Phobius | 157 | 179 | 23 | - | – | |
| TMHMM | 157 | 179 | 23 | - | – | |
| Phobius | 180 | 190 | 11 | - | – | |
| Phobius | 191 | 209 | 19 | - | – | |
| TMHMM | 192 | 209 | 18 | - | – | |
| Phobius | 210 | 214 | 5 | - | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| Phobius | 215 | 236 | 22 | - | – | |
| Phobius | 237 | 249 | 13 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Protein processing | Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a protein. Protein maturation is the process leading to the attainment of the full functional capacity of a protein. | ||
| Biological process | Positive regulation of catalytic activity | Any process that activates or increases the activity of an enzyme. |
Expression pattern of LotjaGi3g1v0497700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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