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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0502000 |
| Transcript ID | LotjaGi3g1v0502000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | B3 domain-containing protein; TAIR: AT3G18990.1 AP2/B3-like transcriptional factor family protein; Swiss-Prot: sp|Q8L3W1|VRN1_ARATH B3 domain-containing transcription factor VRN1; TrEMBL-Plants: tr|A0A151TG43|A0A151TG43_CAJCA B3 domain-containing transcription factor VRN1; Found in the gene: LotjaGi3g1v0502000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92031606..92035740) extracted from Lotus japonicus Gifu genome v1.2.
GATAGATAACGTGCCAAATTAGAATTACACAAAATTACAGGGACCCAAACATAAAAACAAACAAATCACTCTCTTCCAAA ATTCCAAATGGAAACACAACACAAGACAACAAACACAAAAGGGGTTTTAGAACTGCACTAAGAAAGTTGCTTGGAAATTG AGTCCATCCAAACTGGGTAAATTTTTTTGGTAACTCACTGAGTCATGAACTCGTCAGCTTTTAGGTCAAGTTGAGGTCTT TTTTATTCAAAACCACTGTTTGACTCATAAACAGAGAAGGGTTGTGAAGTAGTAGATCTGGAAGGTGAAGAAATTTCAGA AGATAGAGTCCAAAGTTTGCAACTTTGAACCAAACGGTGTGCAATGCTATAAGGGTTTGGAGTTTTGGGCTCAGAATCAG TCACAAAATGCCGCGCCCTTCTTTCTACAAGCTTGTTCTACCCTCCACTGTTCAAGCCAAGCAATTGGTACCGAAATTCT CTTCCCCTTTTCCTCTCATTACTCTGAGATTTTATTTTATTTGATTTTTTGGGTTTTTTCAGAGTTGGTTTTGAGTTTTA TTTGTTTGATTTTGGGTGGGTGTTCTAGGGTTTCTGTGAATTTTGAGTGAGAGGGGAAGAAAGGGGTAGTTAATTTTTCT GGGGTTTTGATTTTTTTCACCCCCACTATCCCCAATTCACTAATCTTGTCACATCTTTCTTAAAGTTTGGATTTTTTTAA CCCTTTGAAGTGTGATTAGTATCACCAATTTCTGTTTTGAATTAGGGTTTGTTCCTACTGATTGAGTGGATGTGAAGTAA ATCAGAAAAAAAAATGTATCTTTTGGGGTCATGGTGTTAGGATTTTAGAGGAGATAGACCTGAAATTAGTCCTGGACTTA ATAGTGTGCTCACCCATATAGGCCTTTCATTTTTCTCTTGCTTTTTTTTTTTGGTATATACATCCGGTACCCGGTCACCC TTTGGATGCCGCCAGATTCGGGATCAATAATCTCCCCTAAAATTGCCATATATTTTTTTTATGTTTTCTTAAAATTAGGC TGTATTAGATGACTTGGAGGTTGTTTAACTGGAGGAAATTCTGAGGAAGCTCATGCTTAATAAATTTTGTGCTTTGCCTT TGAGATCTAATCTCTTATTCTGCACTAGCAATATTTTTGCCACTGGTTCTAGTATGTCCAAGACAGTTATCATGCATTTA CACTGGTTTTTAGTTTCCTGTCCTGTCAAACTGGTTTCAATGCTTGACCTATGCAATTATATTTTGAAGAGATTTTCAAG TTCCCCTCAACTAATACTTGAAGTGATGGAGGACATAGTAGTCAATTGCGGATCGCAGCCTGTCGCGGATGACCCCCAAA AATGAAATCCCATACAAGGGAAGGCCACTATTGGCTGCCTGCGAATAGCGGGATTTCACGGCCCCAATCCCATCGCGGCA GGGGTCTGCTACGCGGCGGCGCTATAGAGCCGCTATCGATAACTATGGGAATCACTTGAATTAAACCCATAATAATGCAA GGCAAATTATATTTAAAGTAACCTATGGAATCATTCTTGAGTCTATGCCTGTACTTAGCATTTTAGCTTCGTATTGGCTT ATTTAAGAGCTAAACTTGTTGAAACAAATTCATATACAGAAAATTGTACTTTTAAAATGAATTATTTTTTGTCTTAACAT CATCACCAGTGGTCTTCACTCTTCAACTTCATATCTCATTATTGATGTATTTTGTTTGTTTAAAGTTGCTTTGAGTTTAG GCTTCTCGCTCTCATAAACGTGTGAGAATTAGTCTTCATTTGGATCTTGGTAGTTGGTAGGACTAAATACAAGATAACCA TGGTTCCAGTTTTGTATACATCTCAAAACTAAGTCTTCTTATCATCCCTACATTATTCTACTTGGGTAAGGGCAGTGGTC ATTTTGAGTGGATGCAAGGGGCAAATTGGCCTGTTCATTAATTAAAAGTTCAGCTCTTAGAGTAAAAAACATCATCATTG TGGTAGAGAGCTCATTATTCTGCTTGAATTGCTTGAATTCAAAATTTGTATCTAACTTGATTTTTGAATTGCAGAGGCTC CCGGATAATTTTATGAGGAAATATGGGGGTGAGCTTTCTCCATTTGCTACCCTCTCTGTTCCTGACGGTAGTGTCTGGCG TGTAGGATTAAAAAAGGCAGACAACAAATCTTGGCTCGTTGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGCG TTGGATACTTGTTGGTATTCAGATATGAAGGCAAGTCATCTTTCAATGTTAATATCTTGGCTACTTCTGAGATAAACTAT CAACCAGCCACACGCAGCAGTAATGAAGGGCCTTACTTCGCAAGTCGGCTTAAATTTCTTGAAGAAATGGAAGATGAAGA TTCCATTGAAATCTTGGATTCATCACCTTCGCACCTCACTCCTGGTAGTACATTGCCAAACAAAGCTTTTCCTGGATCAG TAGATAAGTCAACACCTGGAGGCAAGAGTTATTCGCCTCCAGCATTGCAGAATCTGTTTAATGGGTCTAAACTTAATAGT ATTAACAGGGGAGAGGGCGGGAATACCCTTTCTTCAAGAAGTGCCAATTCACAAGACAAAAAGTTGTCCAGGGATATAGG TGTCCAGTTTAATGCAGCTGAGTTTAAAAGGTCTAATGAAGAAGTGAAATTGCGCGCATCTATGGAGGAAAGAATTAAAA AAACTGCGACGAAGAAGCGTAAATCAGGTATTAGTAAGCTCTCATTAATCTGTTTTCTTTCTAGCTAGTTATTGAGATTG AATTTTATGATCAACACAATTTGTGAAAGTGCAGAAGACCAGGAACATGAAGAGGAGGTAGAAATGCGCGTTAGATTTTA CGAAAGTGCTTCTGCAAGAAAAAGAACTGTGACAGCTGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGAGTTTGAAC CACCTAATCCTTTCTGTCGGGTTGTCCTGCGGCCCTCCTATTTATACAGAGGATGCATTATGGTGAGCCCTTGAATTCAC CATGCCATGCATTTTTAATTCTTCTTGAACAGCTAATCTTTGAATACTAAAACTCCTCTTTCTGTTTTCCAGTATTTGCC ATCCTGTTTTGCAGAAAAGCATTTGAATGGTGTTTCGGGATTCATTAAACTTCAAACCTCTGATGGGAGACAGTGGCCGG TTCGCTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGTTGGTTTGAATTTGCATTAGATAACAATTTAGGTGAA GGTGATGTCTGTGTGTTTGAGCTCCTTAAAGTGAAGGATGTGGCGCTGCAAGTTACTCTATTTCGTGTCACTGAAGATGT GGGATTGTTGAGCTCTCCCTTGCAGCAGAACGAAAATGCGGTATCAGCTAAACAATTGAGTTCTCCCTTGCAGCATCACC TCACTTCATCTAAACTAGTTAGAAATTAACATTAGCTTCATTCATGATAGCTCTACTGTGTTATTAAGTAGCCCTTGCTT CTGTGTGATCATCTCTTATTTTATTAATGTGGAACCTAGATGCTTTTTATGTCCATTTCAGGATGACTTAAGTGTAACAT AGTTATTGTAGTTTAAGTACCGGTTCTTGTTTACAACTGTTTCTGAGACTGTGAATAGATTGTTCAATTTACCTGATGAG AATCCAAGACAATGCTTATCCTTTTTATTCTTGCATCCACCGCTTTTGTTTATTGCTGAAAATAAATTTGAGTTGCCTTT CACATTTACCTTTTCTATTATGGACTTGTTTTCATATTATTTTTAGAGAAATTGTATATCATATGGATGGATGATAGGGA AAAATAACAACAGGTCTTCTTCATTTTCTTTTCAAAAATATATTGATGTTACACTGTCTTAAAGGCCATCACTTAGTAAC CTTTATCTTTGTTTGCCATCATTCATTCATGATTAAAAGAGCTCGTATGCTTAAACTTGTTTCTTGGTACTACTTCTAAG CACAAGAGTAAAACCACCACAACCTTCACATCTACATCCACCATCTCTTTTTTTTCCCACTAATAACCTCACTATTTGCA ATATCTACATACATTCCCGCATTTTAGCTCCCCCCGTATGCAAAGTATTGATGTT
CDS sequence (LotjaGi3g1v0502000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCGCCCTTCTTTCTACAAGCTTGTTCTACCCTCCACTGTTCAAGCCAAGCAATTGAGGCTCCCGGATAATTTTAT GAGGAAATATGGGGGTGAGCTTTCTCCATTTGCTACCCTCTCTGTTCCTGACGGTAGTGTCTGGCGTGTAGGATTAAAAA AGGCAGACAACAAATCTTGGCTCGTTGATGGTTGGCAAGAATTTGTTCAACGCTATTCCATTGGCGTTGGATACTTGTTG GTATTCAGATATGAAGGCAAGTCATCTTTCAATGTTAATATCTTGGCTACTTCTGAGATAAACTATCAACCAGCCACACG CAGCAGTAATGAAGGGCCTTACTTCGCAAGTCGGCTTAAATTTCTTGAAGAAATGGAAGATGAAGATTCCATTGAAATCT TGGATTCATCACCTTCGCACCTCACTCCTGGTAGTACATTGCCAAACAAAGCTTTTCCTGGATCAGTAGATAAGTCAACA CCTGGAGGCAAGAGTTATTCGCCTCCAGCATTGCAGAATCTGTTTAATGGGTCTAAACTTAATAGTATTAACAGGGGAGA GGGCGGGAATACCCTTTCTTCAAGAAGTGCCAATTCACAAGACAAAAAGTTGTCCAGGGATATAGGTGTCCAGTTTAATG CAGCTGAGTTTAAAAGGTCTAATGAAGAAGTGAAATTGCGCGCATCTATGGAGGAAAGAATTAAAAAAACTGCGACGAAG AAGCGTAAATCAGAAGACCAGGAACATGAAGAGGAGGTAGAAATGCGCGTTAGATTTTACGAAAGTGCTTCTGCAAGAAA AAGAACTGTGACAGCTGAAGAAAGAGAAAAGGCCGTCAATGCAGCAAAAGAGTTTGAACCACCTAATCCTTTCTGTCGGG TTGTCCTGCGGCCCTCCTATTTATACAGAGGATGCATTATGTATTTGCCATCCTGTTTTGCAGAAAAGCATTTGAATGGT GTTTCGGGATTCATTAAACTTCAAACCTCTGATGGGAGACAGTGGCCGGTTCGCTGCCTTTATAGAGGAGGTAGAGCCAA GTTAAGCCAGGGTTGGTTTGAATTTGCATTAGATAACAATTTAGGTGAAGGTGATGTCTGTGTGTTTGAGCTCCTTAAAG TGAAGGATGTGGCGCTGCAAGTTACTCTATTTCGTGTCACTGAAGATGTGGGATTGTTGAGCTCTCCCTTGCAGCAGAAC GAAAATGCGGTATCAGCTAAACAATTGAGTTCTCCCTTGCAGCATCACCTCACTTCATCTAAACTAGTTAGAAATTAA
Protein sequence (LotjaGi3g1v0502000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPRPSFYKLVLPSTVQAKQLRLPDNFMRKYGGELSPFATLSVPDGSVWRVGLKKADNKSWLVDGWQEFVQRYSIGVGYLL VFRYEGKSSFNVNILATSEINYQPATRSSNEGPYFASRLKFLEEMEDEDSIEILDSSPSHLTPGSTLPNKAFPGSVDKST PGGKSYSPPALQNLFNGSKLNSINRGEGGNTLSSRSANSQDKKLSRDIGVQFNAAEFKRSNEEVKLRASMEERIKKTATK KRKSEDQEHEEEVEMRVRFYESASARKRTVTAEEREKAVNAAKEFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNG VSGFIKLQTSDGRQWPVRCLYRGGRAKLSQGWFEFALDNNLGEGDVCVFELLKVKDVALQVTLFRVTEDVGLLSSPLQQN ENAVSAKQLSSPLQHHLTSSKLVRN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 99 | 99 | 5.4E-24 | ||
| PANTHER | 1 | 403 | 403 | 4.2E-173 | – | |
| PANTHER | 1 | 403 | 403 | 4.2E-173 | – | |
| SUPERFAMILY | 3 | 96 | 94 | 1.24E-21 | ||
| CDD | 4 | 95 | 92 | 7.54669E-18 | ||
| ProSiteProfiles | 5 | 98 | 94 | 12.943 | ||
| SMART | 6 | 98 | 93 | 5.8E-16 | ||
| Pfam | 7 | 94 | 88 | 1.2E-13 | ||
| MobiDBLite | 134 | 204 | 71 | - | – | |
| MobiDBLite | 135 | 153 | 19 | - | – | |
| MobiDBLite | 160 | 204 | 45 | - | – | |
| Coils | 227 | 247 | 21 | - | – | |
| Gene3D | 269 | 390 | 122 | 1.8E-36 | ||
| SUPERFAMILY | 285 | 386 | 102 | 2.35E-25 | ||
| CDD | 290 | 385 | 96 | 6.55796E-24 | ||
| ProSiteProfiles | 292 | 387 | 96 | 14.41 | ||
| SMART | 292 | 387 | 96 | 1.6E-18 | ||
| Pfam | 295 | 385 | 91 | 5.6E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi3g1v0502000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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