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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0502300 |
| Transcript ID | LotjaGi3g1v0502300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transmembrane protein 45B; TAIR: AT1G49470.1 transmembrane epididymal protein (DUF716); Swiss-Prot: sp|Q5XGD7|TM45B_XENTR Transmembrane protein 45B; TrEMBL-Plants: tr|I3SWP1|I3SWP1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0502300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92047730..92049809) extracted from Lotus japonicus Gifu genome v1.2.
TGAAATATCATTTTTTAATTGATGTCTTTAAAGTTAGATCTTGACTTTTCCTAGTGGTCTACCAAAACATTATTTTACAT ACATCTCACAATGGTGGTAAAAAATATACTCCTTGTCGCTTTCCCTGTAATATATAATATTTACATGAATTTGGTGTAAT GGGGACTCAACTTCTTTCAATGAGTGGGGGGAAATCTTGCTTGCCACATGAATTTATTGGAGAAATTTCACTCTCGACTT CATGAAGGGACACATCTTGCTTGTATGGTTCAATGCAAAAAGCCAATCACTACTGCTAGGGGTATTTTCACTTTTCAGCC TCACTATGAAAGGTTTTATATATTGATTGCTGTTATATTTGGTTCTTTTTAAAGGAGAGTTATCTCTTATCTTCTCAAAC CTGATGTGGATTTCCAATTAGAGTGCTTAGAACTTTAACGAAAATAACAAGTCCCTCAATTATTACTTTAATTTGTCATG AAGTGCTGCCCCCATTTTAATCTTCTTTTCATGATGTTGCTCAAAACAGGTTCTCCTTTCTGGTTGTGGAAACACATGCA CCATGCACTTGATAAAATGTCTTAGACCAATCATGTCATATAAAGCACCTTATTCCCTGCAAGCATCAATTTTGCAATGG CTTCTTGTATTTAAATATGAAGAAATGGACCTAAAAAGACGGGTGCCTTGTGAAGAAAAACTGTTGCCATGAGCTTGTTT GTAGAACACTTAGTGCAGGGTTTAGCCCTTGCCCTTCTTGGTCTATGGCACACCATCAACACCATTAAATCTTACCTTGT GAAGGGCCCTGCAAACTTCACTGTGAGATTCTGGTTTCAATTCAATACCCCTCTGGCTAGACTCAAACACTTGGAGCTTG TTTCCATTTTATGCTTTTCTATCCTTGCAATTTTCACGCAAATTCTAGACTTCCCCAACTTCCACTATGCTTTTAAGCTT CATAACTTTGAGCATGCAACTATGTTCATACACCTTGCTTTGTTTGCTGGCTTCTCCCTCTCAATTGAGTTGACTGATTC ACTTGATATCTTCTCCGGGTTTGTTGGCATACTCGCATCCTCAATGTTTAGCCAAGAGCTCTTCCTGCTCCATTTCCACT CCACAGACCATGTTGGACTTGAAGGTCATTACCACTGGCTGCTGCAACTCATAGTGATTGTCTCACTTGTTTCAGCTATG GCTGCAGCTATTTTTCCTCAAAGTTTCAATGCCGCGCTGGTGCTTTCCATTTCAATCATCTTCCAGGGATGTTGGTTTAT AAACATGGGGTTCATGCTATGGATTCCTGCATGTATCCCTGAAGGATGTGTCATGAACACAGCCAAGCCTAATCAAAGTA GAATCCTAGGGGCAGTTGCTTGTGGATCCAAAGAGGCTGATTTTCGCGCCAGAGGATTAGCCAATTTACAATTTAGCTGG ATCTTTGCTATAATTGTGATATTTGCAGGGATTATATGCTTGAAACTGGCTAGAAAATGCACTATTTTAGACCGGTTGGA GTATGAGAGAATTCAGAATAAAGGAACAGACTCCACTATGGCCAATGAAGGTTTCAAGCAAGGCAAATAATCTACAAGAG TTTGTTTAGTTAAGGCCTCTAGTGTAGACAAGAGACCTTAGATTATGTAACACAATATGCAATAGTGTGTAGTATACTAG CCCAGGATTACATAGATGTTGTTTCCAGTAATCTCTTGGGTTTCATAACTAGTAAGGAAATATTCAACAAAGCTATCAGC TATATAATGTTTGCCACAGTTCAAAATTGTCTAGTGTCTATCTGGGCACTGGTCTTCTGTGGTATCACTCTTTCAGTAAA TGTAAGAAGCATTCTATGTGTAGAACTTGTAACATGAAGAGATTATTTTCTTTTGATTTCTTGTTGCAGAATTTCCATTT TTCTTCTTTCTCCAGTCTTCCCTATGTATGCTACTTACATAAAATGCACTTCTAGAGGAGATGGAGAAACTATAGCGGTA TCCCAAATTGAGAAAAACGAAAGCATACCAATAAAATTGTTAGAAGATTCAGTTCCAAGTTCTCTACCTGCTTATATTAC
CDS sequence (LotjaGi3g1v0502300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTTGTTTGTAGAACACTTAGTGCAGGGTTTAGCCCTTGCCCTTCTTGGTCTATGGCACACCATCAACACCATTAA ATCTTACCTTGTGAAGGGCCCTGCAAACTTCACTGTGAGATTCTGGTTTCAATTCAATACCCCTCTGGCTAGACTCAAAC ACTTGGAGCTTGTTTCCATTTTATGCTTTTCTATCCTTGCAATTTTCACGCAAATTCTAGACTTCCCCAACTTCCACTAT GCTTTTAAGCTTCATAACTTTGAGCATGCAACTATGTTCATACACCTTGCTTTGTTTGCTGGCTTCTCCCTCTCAATTGA GTTGACTGATTCACTTGATATCTTCTCCGGGTTTGTTGGCATACTCGCATCCTCAATGTTTAGCCAAGAGCTCTTCCTGC TCCATTTCCACTCCACAGACCATGTTGGACTTGAAGGTCATTACCACTGGCTGCTGCAACTCATAGTGATTGTCTCACTT GTTTCAGCTATGGCTGCAGCTATTTTTCCTCAAAGTTTCAATGCCGCGCTGGTGCTTTCCATTTCAATCATCTTCCAGGG ATGTTGGTTTATAAACATGGGGTTCATGCTATGGATTCCTGCATGTATCCCTGAAGGATGTGTCATGAACACAGCCAAGC CTAATCAAAGTAGAATCCTAGGGGCAGTTGCTTGTGGATCCAAAGAGGCTGATTTTCGCGCCAGAGGATTAGCCAATTTA CAATTTAGCTGGATCTTTGCTATAATTGTGATATTTGCAGGGATTATATGCTTGAAACTGGCTAGAAAATGCACTATTTT AGACCGGTTGGAGTATGAGAGAATTCAGAATAAAGGAACAGACTCCACTATGGCCAATGAAGGTTTCAAGCAAGGCAAAT AA
Protein sequence (LotjaGi3g1v0502300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSLFVEHLVQGLALALLGLWHTINTIKSYLVKGPANFTVRFWFQFNTPLARLKHLELVSILCFSILAIFTQILDFPNFHY AFKLHNFEHATMFIHLALFAGFSLSIELTDSLDIFSGFVGILASSMFSQELFLLHFHSTDHVGLEGHYHWLLQLIVIVSL VSAMAAAIFPQSFNAALVLSISIIFQGCWFINMGFMLWIPACIPEGCVMNTAKPNQSRILGAVACGSKEADFRARGLANL QFSWIFAIIVIFAGIICLKLARKCTILDRLEYERIQNKGTDSTMANEGFKQGK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 291 | 291 | 7.5E-137 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| PANTHER | 1 | 291 | 291 | 7.5E-137 | – | |
| TMHMM | 10 | 31 | 22 | - | – | |
| Phobius | 12 | 31 | 20 | - | – | |
| Phobius | 32 | 51 | 20 | - | – | |
| Phobius | 52 | 72 | 21 | - | – | |
| TMHMM | 52 | 74 | 23 | - | – | |
| Phobius | 73 | 91 | 19 | - | – | |
| TMHMM | 89 | 106 | 18 | - | – | |
| Phobius | 92 | 108 | 17 | - | – | |
| Phobius | 109 | 114 | 6 | - | – | |
| TMHMM | 111 | 133 | 23 | - | – | |
| Phobius | 115 | 136 | 22 | - | – | |
| Pfam | 117 | 257 | 141 | 2.1E-46 | ||
| Phobius | 137 | 147 | 11 | - | – | |
| TMHMM | 148 | 170 | 23 | - | – | |
| Phobius | 148 | 169 | 22 | - | – | |
| Phobius | 170 | 175 | 6 | - | – | |
| Phobius | 176 | 199 | 24 | - | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 200 | 241 | 42 | - | – | |
| TMHMM | 240 | 262 | 23 | - | – | |
| Phobius | 242 | 261 | 20 | - | – | |
| Phobius | 262 | 293 | 32 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0502300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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