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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0503000 |
| Transcript ID | LotjaGi3g1v0503000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | mediator of RNA polymerase II transcription subunit; TAIR: AT5G19480.1 mediator of RNA polymerase II transcription subunit; Swiss-Prot: sp|Q6NQD9|MD19B_ARATH Probable mediator of RNA polymerase II transcription subunit 19b; TrEMBL-Plants: tr|A0A0B2PXI8|A0A0B2PXI8_GLYSO Uncharacterized protein; Found in the gene: LotjaGi3g1v0503000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92124061..92127469) extracted from Lotus japonicus Gifu genome v1.2.
AATCTCAATTGTAGGTTTATAAAAAAAAATCCCAATTGTTCGGAGAAGAAAACCCTAATCCCAATTGTTAGCACTCTTTG CGATTTCTAGTTTCTTCTTGATTCCACAGGTTGCCCCCATTTTCCTTTTCAACAATCAAGAACTGTGAACCCTTTGTTGA GTTTTGCAAACAATAACCTTAATCTCTGCTTCATTGCCAGGTATCTTTTTACTCATTTTCTGGGTTTTGTTTCGCCAAGG CTATTTGATTGCATTTCCTTCTTTTTGATTTTAATTCACTCCCCAACATGTAAAGTTTCCATCTTTATTTGATTTTCATG TTTTTCGATATTGGGGTAGCTTTCTTTTCCCCTTTTGTTTAATGGCTGGAAAATCCAATTTCTCATATGTTTTTTCATGG GGAGTTTAGTTTGATGCATGATTTTACATATATCATGTATGTTTTAGATGTTGTTATACTCACAGGTTTCATTAAGTTTA CAATTTCATTGCTTATAAACTTCCTCAGTTGTCTAATTTTTCAGGCACTAACTTTCCACAAGTAGGTGCATTTGAGGTGC ATTTTGTGAGATCATCTGAAGGATGGATCGTAAAGGAAAAGGATTTGGGAAGGGTAAGAATTTGACATGTAGCCTTCTTT TCTATTTTTAATGATGGTGCAAATGTGCATGATAACTATACTTTCTCACAATATGGATTTGCTCTTGTTCTTGTTATTAC TTTGTTGGAGTAGTTGAACAGGAACACTGAAGCATTTGGTTTACCACGGAGCATAGCATACATAACATGATCACTTAGAG AATGAAAATAATAATTCTTTTGTAATTTCACATTAAATCAATGGGTTGTTCTAAACAAAAGATTATTAGTAGTCGGCAGA GCTTTCTTTATCACATAAAATGTTTTATTTTCTTGTACCACTAGACTTTCTTGGTTCACCATTTCACTGACATCAGAGCC TCACATTCAGAGAATTTTGTTAGGTTTATAGTCAGTGATATAGCAAACAGAGCTTAATAAACCTTTATGATCATGAGATG ATCATTTCTGAAAATCCTATTCAAGGCTTGCTCTAACATTTAAAAATGTGAATTCACACCTTTCTTTTGACGTTTAGTCA GTGATGACTTGATTCATGTTCTATCATGTATGTTAAATTACCTGCAGTGGATTATTTGGTAAACTAGTGCTCATGTTACC TTTTCTTATTATTACTATGTGTAAAATGCATGTGGGTTTAAGCTAGTAAACTATATGGAATATTCTTTGTTTTCTAGTTA AACTTCAAAACATGTCATTCCCTGTTATTAGGTGCTGCTGATTAGTTTTTGTCAGAACATTGATCTAGACTGGATGGATC TTCTGCTCTTATTTTATTTTTTGAGAACTTGTAATTAATGCATGAAGTTCGTATTCCTTTCAATATATTTTGTTTAGTAA GGTTATTTCATGGAATCAGGCAATAGAGAACTTGGAGGTGCTCGTGATCTCATAAGTCAGTACAGGCTTTGGCCATACTA TGAAATCTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGAGACACCATATCTTCGCAATGTGGTGGGTGACACAAATA TCAGGAAGGGAGAAGGAATGGAACTGAGTCAGCTCTGTCAAAACACCTACGTGAGTGAGAAAAAAGCTCGCTTACATCCT TTTGAGTTGGATGTACTCAGTGAAGCTTTCCATATGAAGGTAATGGACCCAATCCGCATTTCTTCTGTATGATTTTTAAT CTTCTTGACTGGCTTCACATTTGATCTTTTTCTTCACATTAAGGAGAGCAGAATAATTCAAACTGTCTTCAAACTTCATG TTTGATTGATATGTCATGCTGATATGTTATACACATGACCAGAAGGGGCTACCAAGTTCAGTTCCAAAGTCGGAGAACCA ATCTAGGGAAAAAGAGAGGAAGAACAAGAAGATCAAAGATGATAATAAAAAGGATGAGAAGTATAAGGAGCACAAGCTAC ATCAAGTAACAGATGGTATAGCAAACAACAGAATTAAACACCATGATTCTCATACATTGCAATTGAAGAATCGGCAAGAA AAGGTTTGCTTTCAGCCCTTCTTCCCACTGTTATGCATTGTGTTTTTACATTAAATCAATTTTTATTTTTATTATTCATA TAATTTTTGTTTCCATCTTAAATACCAATACTAGAGGTAAGGTATTTTATAATTCTATTGACCTTGTTTTGTTTACATGA CATAGCTGGTATACTGCATTAGTTTCTGTCTCAATAAGAGAATAGTTACCATTAACCATACTATTAGTGTTCGCAAAACC AAAAGAGAGGGACGTTGTGCATATAAATTACCTTATACTATTCAATTCTTCCTGTATAAATCTGAGCTGAAGTTAAGTGA GATCTTGCCCATATTTCTTGGTTGCTAGAATTCAATTTCTAGATTAACCAAATCTATTTAGAAGTTGAATAGGAATGTGA GTGAAAGAGAGGGACGTGGTTTTGTTTTCATCTCAATGATTGTAGTGAAACCCTCGTATCTGTACTGTGGATTTGCCAAG ACACTAGTAGAATCAGTTTTGTTATTATTGGAAAAAAAGTCAGTTTTTATTTGAACTAATTTTTTTTCTTGTTCTCCTTT CCTTTTGTTTCTACTTATAAATTGAATTTTATTATGCAAATTTTTTAAATGGTTCACCAAACAGTGGCTAGTTCAAAACT GAATTTTATGCAAACTAAATGTAATTCAAAACTAGTTATTTTCTGGATAGGCGTTTTGTCCTGGGGGAGCACTTGAAATG ACTGTTTTTGCATTCGCATGTGTTTTGAAGTATTAGATGCTATTTATATGCCAACTTAATTGCACTAAAATCTTAATTTC TCCCCATTTCACTTCTGCAGAAAAGGAAGGCTGAGACAAGCAATGATCCTGTTTCCAAGCGAGTAAATATGAGACAATGA AAGGCAGCAGAAGTAGAAGTTCATATTCTTCCATGAGAATGTGACAGGAAACTCTATTTTGCGATATTTGACATTTCACT ATTCTTTTGATCCGTGATTCTATTACATATTCTGAAAGCCATTTCGCTCGTGTTCTGATTCTTGTGTTTGAGAAAAAACT TACTTGAAGGGCTAGTACTATCAGAATATGGATTGTCTTGGCACTAATAGAATTGTCTTCTGCGGATAATACATGAATTA GACAAAGAATATCAAACAAGCATGTAACCAGGGCTTCACGCAAGCTATGTAAATTTCTCACCATTGTATATTTGTACGAG AATTAATGTCTTAAATAACCGTTTGTTCATGATAATTAATTATGTAGTTTAAATTAAAATTTATCAATATTTTGTGAATT GACAATTTTTTTGTGCACCAAGAGTCCCAAGAGTTTTCTTAATCGATAC
CDS sequence (LotjaGi3g1v0503000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCGTAAAGGAAAAGGATTTGGGAAGGGCAATAGAGAACTTGGAGGTGCTCGTGATCTCATAAGTCAGTACAGGCT TTGGCCATACTATGAAATCTTCTGCAAGAAGTCACTTCCATTGTCAATTTCAGAGACACCATATCTTCGCAATGTGGTGG GTGACACAAATATCAGGAAGGGAGAAGGAATGGAACTGAGTCAGCTCTGTCAAAACACCTACGTGAGTGAGAAAAAAGCT CGCTTACATCCTTTTGAGTTGGATGTACTCAGTGAAGCTTTCCATATGAAGAAGGGGCTACCAAGTTCAGTTCCAAAGTC GGAGAACCAATCTAGGGAAAAAGAGAGGAAGAACAAGAAGATCAAAGATGATAATAAAAAGGATGAGAAGTATAAGGAGC ACAAGCTACATCAAGTAACAGATGGTATAGCAAACAACAGAATTAAACACCATGATTCTCATACATTGCAATTGAAGAAT CGGCAAGAAAAGAAAAGGAAGGCTGAGACAAGCAATGATCCTGTTTCCAAGCGAGTAAATATGAGACAATGA
Protein sequence (LotjaGi3g1v0503000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDRKGKGFGKGNRELGGARDLISQYRLWPYYEIFCKKSLPLSISETPYLRNVVGDTNIRKGEGMELSQLCQNTYVSEKKA RLHPFELDVLSEAFHMKKGLPSSVPKSENQSREKERKNKKIKDDNKKDEKYKEHKLHQVTDGIANNRIKHHDSHTLQLKN RQEKKRKAETSNDPVSKRVNMRQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 2.0E-72 | – | |
| PANTHER | 1 | 174 | 174 | 2.0E-72 | ||
| MobiDBLite | 98 | 183 | 86 | - | – | |
| MobiDBLite | 108 | 173 | 66 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Transcription coregulator activity | A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to either activate or repress the transcription of specific genes. Coregulators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. A third class modulates interactions of DNA-binding transcription factor with other transcription coregulators. | ||
| Biological process | Regulation of transcription by RNA polymerase II | Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II. | ||
| Cellular component | Mediator complex | A protein complex that interacts with the carboxy-terminal domain of the largest subunit of RNA polymerase II and plays an active role in transducing the signal from a transcription factor to the transcriptional machinery. The mediator complex is required for activation of transcription of most protein-coding genes, but can also act as a transcriptional corepressor. The Saccharomyces complex contains several identifiable subcomplexes: a head domain comprising Srb2, -4, and -5, Med6, -8, and -11, and Rox3 proteins; a middle domain comprising Med1, -4, and -7, Nut1 and -2, Cse2, Rgr1, Soh1, and Srb7 proteins; a tail consisting of Gal11p, Med2p, Pgd1p, and Sin4p; and a regulatory subcomplex comprising Ssn2, -3, and -8, and Srb8 proteins. Metazoan mediator complexes have similar modular structures and include homologs of yeast Srb and Med proteins. |
Expression pattern of LotjaGi3g1v0503000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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