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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0506100 |
| Transcript ID | LotjaGi3g1v0506100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; TAIR: AT5G66680.1 dolichyl-diphosphooligosaccharide-protein glycosyltransferase 48kDa subunit family protein; Swiss-Prot: sp|Q944K2|OST48_ARATH Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit; TrEMBL-Plants: tr|A0A1J7HGA3|A0A1J7HGA3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0506100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92343997..92346753) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAACAGGCTCCAGTACTTTTCCAAGGGATTGGACATTCTTTAAATCCTTCTAATAGCCTGGTAATATTTGGTAATCT TAGTTCAGTTGTCATCATTGGCCTTATTGCATTTATAAGTCTACTTTAGTTTAGTTATACTTTTATATGTATTTCAATTT AGGTGTTGAAAGTTCTCTCAGCATCTCCTACAGCTTACTCTGCTAACCCCAAATCTAAGTTGACAAGTCCTCCATCACTA ACTGGATCTTCTATCTCGTTAGTTTCAGTTGTACAGGTATGTCTATGTTTCATCATCCTGTTGTACTATTTCTATCCTCA ATTTGCCCTTTTCTGCTTGACTTTTAATATGGATATGGCCTTGTTCTATTGCTTTTAAATATGTATGCAAATTATGCTTG CTAATTTTGTTTTTACTCCTTTAGACATTATCCATTTCCCTTTTGGAATAGTATATTTTTTAAATGCAAAAAAGTACACA AATATGTTGTCAAATATCTGGTGTTTCATCTCATTTTTTCATAATACGTGATTTACACACATTTATTTTTCATTACATGC TGTTATGATTTTTTAAAATATTAATTCTGAACCTAAGTAGTAACTCATCGCTTATTCTCTCCTTTTATGTTGCTTAGGCA AGAAATAATGCTCGGGTATTGATCTCTGGCTCATTGAGCTTGTTCAGCAACCGGTATGGAAGGCTTAGTTGTTAATCTAG GTTTTCTAATACTATGTATGCTCTGAAGCTCATTCGAACTTATACTAACTAACTTGGATTTATTTTATTTTGTTTGCAGA TTTTTCAGGTCTGGTGTGCAAAAGGCTGGGAGTCCAACCAAGTGAGTGATTTGTTTATCCTGTTTAGTATCAGAACTTTG TTCACTGCTAGAGTGGTTGTCTTCTCTCTTAACACTGTCATAATTCAGTTTTTATCAACTATTTTGCGTAATAATTCCAT TAAACCCAACTTAATTGCCAATGTGTCTCTTTCCCTTTAGAATCTAATTTTTAGGGAAACATACTTTCTGCTAAATGAAG TTTGGTATTTTCTTTTCTTTTGCGAGGAACAGACATGACAAGTCCGGTAATGAGCAGTTCTTGACTGAACTTAGCAAATG GGTTTTCCATGAAAGAGGTCATCTTAAGGTAAGGCAAATTCTTCCATCAATTCTATTGTCATTGTTCATATACTACTATT TGATATTTGACATCATCATTTACCATCACTATTATTAATTAATTTGCTTTTACTTCATCTTTTGACATTAAGGCGGTGAA TGTGCAACACCATAAAGCCGGTGAAGCTGATGAACCATCCATCTATAGGATCAACGATGATCTGGTAATTTAAATATTAT TTCGATGATGATGTGCTTTAATTGAAACATTATTTTCGGTTGGCGCTCACTTCTCAAATCTCGTTAAAGGAATACTCTGT TGAAATTTATGAGTGGTCTGGGACAACTTGGGAACCCTATGTAGCCAATGATGTTCAAGTGCAATTTTACATGATGAGCC CCTATGTCTTGAAGACTTTATCAACTGACGGGAAGGTTGGTTTGAATTTCCTTTCGAACGTCTTAATTTCTTCTCTAATA AGCTCTTTACTGAAATTTGTTGGATTACGTTTTCTCTTTCAGGGTCGTTATTTCACATCATTTAAGGTTCCAGATGTCTA TGGGGTTTTCCAATTCAAAGTTGAGTATGAAAGACTTGGATACACAAGCTTATCATTATCAAAGCAGGTAATTGCTGATC CTCAAGTATTTCATTTCAGTGTGGAGTCATTCTGCCTAGAGTAATTGGAGAGACTCAGCCACTCTCCCTAAGCTCCAAAC CCCAAATGATCCAAAAGATATCAATTCTAACCCTTAACTCTCTATTTATAGGCTACATACGTCACACTAACCCACCCACT AATTAACCCGCTTCACTAATTGAGCGTGTCTAACACATTCCACCTAAACACCCTTACAAAGTTCACGCACTTTTCTGTAT CATTAAATTTACTTGTGTTTGGGCAGGAGCACATCTAAACTTTTCTTCACGTATCCATATGTAATGTAACAGCTTTACAC ACACTAACACTCAGCATCTTTATGGGTTTAGAATTTCCTGTTCCCAGTGACTATACTTTTAGCTGCTGGCCTTTATGATA CATAGATATGCATTGTTCACTAGCTTTGTGCCTTTGTCTCTTAAACTGGTCATATTTCTGATTTAATTGCTGGATAAGAG TTTGTTACATGATCAAAGTTGAAAGCGAAACTTTGGGAACCTGTAGTTGTGGAACACTGAAACTTCTTTTTTATTTATTG GAATTATAGATTGCAATAAGCAAAATATTATAAGCGTTATTTATGAATATTGTTGAACTTTCCATGTAGATTCCTGTTCG CCCCTTCAGACACAATGAATATGAGAGATTTATACCAACAGCTTATCCATATTATGGAGCATCATTTTCCATGGTAAGGA TCTCTCTCTCTCTCTCTCTCACACACACACACACACACATTGGGTAAGTTGAAATATAATCTTTGATTTTCGACTTTGAT ACTCTGGATAAACCTTTATGTGCATCCCAAAAAGGTGATTAATCTTTCCTAAAGGCAGGTCCAGTTCTCTATTTTCAGAT TGTTTGAGAGCCACATTTAGAAAATTCTTCATGGCTTTTTGGTAATTTAACCTTTTGATTATGATGCAGATGGCAGGTTT CCTCATTTTCAGTGCTGTTCATCTATACAATAAATAG
CDS sequence (LotjaGi3g1v0506100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAACAGGCTCCAGTACTTTTCCAAGGGATTGGACATTCTTTAAATCCTTCTAATAGCCTGGTGTTGAAAGTTCTCTC AGCATCTCCTACAGCTTACTCTGCTAACCCCAAATCTAAGTTGACAAGTCCTCCATCACTAACTGGATCTTCTATCTCGT TAGTTTCAGTTGTACAGGCAAGAAATAATGCTCGGGTATTGATCTCTGGCTCATTGAGCTTGTTCAGCAACCGATTTTTC AGGTCTGGTGTGCAAAAGGCTGGGAGTCCAACCAAACATGACAAGTCCGGTAATGAGCAGTTCTTGACTGAACTTAGCAA ATGGGTTTTCCATGAAAGAGGTCATCTTAAGGCGGTGAATGTGCAACACCATAAAGCCGGTGAAGCTGATGAACCATCCA TCTATAGGATCAACGATGATCTGGAATACTCTGTTGAAATTTATGAGTGGTCTGGGACAACTTGGGAACCCTATGTAGCC AATGATGTTCAAGTGCAATTTTACATGATGAGCCCCTATGTCTTGAAGACTTTATCAACTGACGGGAAGGGTCGTTATTT CACATCATTTAAGGTTCCAGATGTCTATGGGGTTTTCCAATTCAAAGTTGAGTATGAAAGACTTGGATACACAAGCTTAT CATTATCAAAGCAGATTCCTGTTCGCCCCTTCAGACACAATGAATATGAGAGATTTATACCAACAGCTTATCCATATTAT GGAGCATCATTTTCCATGATGGCAGGTTTCCTCATTTTCAGTGCTGTTCATCTATACAATAAATAG
Protein sequence (LotjaGi3g1v0506100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQQAPVLFQGIGHSLNPSNSLVLKVLSASPTAYSANPKSKLTSPPSLTGSSISLVSVVQARNNARVLISGSLSLFSNRFF RSGVQKAGSPTKHDKSGNEQFLTELSKWVFHERGHLKAVNVQHHKAGEADEPSIYRINDDLEYSVEIYEWSGTTWEPYVA NDVQVQFYMMSPYVLKTLSTDGKGRYFTSFKVPDVYGVFQFKVEYERLGYTSLSLSKQIPVRPFRHNEYERFIPTAYPYY GASFSMMAGFLIFSAVHLYNK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 236 | 236 | - | – | |
| PANTHER | 3 | 261 | 259 | 1.7E-158 | – | |
| PANTHER | 3 | 261 | 259 | 1.7E-158 | ||
| Pfam | 3 | 261 | 259 | 2.6E-95 | ||
| TMHMM | 237 | 259 | 23 | - | – | |
| Phobius | 237 | 259 | 23 | - | – | |
| Phobius | 260 | 261 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. | ||
| Biological process | Protein N-linked glycosylation via asparagine | The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification. |
Expression pattern of LotjaGi3g1v0506100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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