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Field | Value |
---|---|
Gene ID | LotjaGi3g1v0509000 |
Transcript ID | LotjaGi3g1v0509000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | Basic helix-loop-helix transcription factor; TAIR: AT4G34530.1 cryptochrome-interacting basic-helix-loop-helix 1; Swiss-Prot: sp|Q8GY61|BH063_ARATH Transcription factor bHLH63; TrEMBL-Plants: tr|I1LJC6|I1LJC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0509000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92615849..92619696) extracted from Lotus japonicus Gifu genome v1.2.
CCCGCTTCCACGGTGAAGGTTTTTTCTATCCTTTTAGAATGATTTTGTTTCTACTTCATGTCATATTTCTTCCTCCTCAA GCCACCACCTTCTCCCTTCCTTTAAATATCCTATGTTCTCTCATCCCTCTCTTTATCAAACTTAGGTCTCAATCTTTCAC CGTAAAACTACTTTAATTTAGTGCGATAGAGCTGCTTATCAAGCTTTTGAAACTAAGTGCAATGAAGAGAAAAGCAAGAG TGGTATAGCAAAAGAATACTAGCTAGATACTTAGATTTAATCTAATTCTTAACCTCTAAACAAACCCGAAATCAAAACAG GTCCAAAGTACCAATTCACTTTATTGAATAGTACCATCCCTTTATTACCATAGAAGGAAAAGAAAAAGAAGAAGCAAAAC GCAGCCGTTTTAGAGGGGTTGGAACATGCCCACGTGGCAGTCATATCAGTGGGCCCCAGATCCCACAGCCTTGGTTATGG ATATATCGGCTGGTTCTCTGCCCCATCATTCCGGCCACTCCTTCTCAGATTCCGGCATCCCCCACCCCCTTTATTTTATT TTTCAAAATTAATAAAATTTATTTTATTTTATTTTTTCTTTTCTTTATATATAACGCTGAACCTTTTGTCTTCCTCATCC TTAACGAACAGAACAGAACAGAACATTTTTCACAAGTGCGCACGTTAGCAACACACACATTGTACCTTGTTCTCGTGAGA GACCCACCTCTGTTTTCACCTTTCCTCTTCTTTCCCACACACATTGCGTGGTGGCCACTTTTCTCACAGAGTTTGCAGGG TACTACTACTCTGTTCATTCCTAGCCAACAACCAACAACGTTAACTCAAACCAACCATGTTGCACTGTCTCAACACTTCA GGGACTGTGGGAGGTGGAGGAGGAGGAGCTTGTTCCGACATGACAGTGCTGGAAAGGCAAAGGGTAAGCAGCAAGAAGTG GCAGCATGAGCAGGAGCATGAGAATCAAGGCTATTTTTGTGGTGGTGGTGCTGATTCTGCGCTTGGTGAGGTGGTGGCTC GCTCTGTGAAACCTGACCCGGGTTTTGAAAACGGGTGGCCTGAATTGGGAAAGTTTGTTGTTGCGGGATTCGGGTCTGGG TTTGATGCTAGCTCTGCAATTTCAAGGACTTGTAGCAATGGTGACTTGGTTTCTGCTACCAAGAAGATGATGGGTTCCGT GAGTGGGAAAGAAAGCTTGAAGAAGAGGAAAGCTGATAATAAGGCTCAGAATTCCAATTCCAAGGTGTGTTAAGTTTCGC TTTCTACAATTCCACACTGTTCTTGTAGGATAGAATTGAGTAGTTTCTGTGTTTCTGCTGTGAGTGTTGGTCATGTTGTG TGGAAATTTATATAGTTTGTTTAATGTTTGCTCGATTAACTGTGAGGGTTTTGTTTGGTTGTGTTTAGGTTTTTGTGGAG AGTGATAGCAAAGACAAGAGGATCAAAGTGAGTGGTGAGGAAGGGGAATCCAAAACCACAGAGAAAACCAGCAACAAGAA TACCAAGTCCTGCACAAACAGAAACAGCAGGGAAACTTCTGAGGATACTTCCAAGGAGAATTCAAAAGGGTCTGAGGTTC AGAACCAAAAGCCTGAATACATTCATGTCCGAGCACGTCGTGGTCAAGCCACGGATAGTCATAGCTTAGCTGAAAGGGTG AGTAGATTAACAGAGAAAATAATTGTTCTTTTTTGTTTAAGAGGTTGGTTCAATGTGTTTCTCTATGTACTTGGAGTTCA ATGTAAATGTTCTGTTATGTTTCTTGCAGATTAGAAGGGAGAAAATTAGCGAGAGGATGAAGTATTTACAAGATTTAGTA CCCGGTTGCAACAAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTACGTTCAGTCTCTTCAACGACAAGT TGAGGTAAGAGTTACTCTAACTTCATTCATTGCCTTTGACATTGGTCTGTAGGAAGTTGAAGTATTAAGTTACTTAATGC CCTTTATCACTTCATGCAGTTCCTGTCAATGAAATTAGCTGCTGTAAATCCAAGGCTTGACTTCAACATTGATGAATTGT TTGTCAAAGAGGTAAGGACAATGAATATGGCAGAACTTTAGCCTATAGATCCTTCTTATTTCTTAGTCGTGTTTGGAAAA CTTTCTACAATCAATATAAAGTCAAAATCAATTCTGGGGACAAGCTTCTTGAGTGCATGTTTGGAAATCTTTCTTTAAAT AATTCTTAAGGCATAATAAACTATGAGAATCAGCTTTTTTTTCTGGGTGCTAGAATTGATTCTGAGAAAAAATAAGTTGA TTCAAACATGATCATATAAGTGTTTTTGTTGCTGATATGCTCTTATATTATTTGATCCACACAGGTGTTTCCTGCTTGTG CTCAAAGTTTTCCATCCATAGGGATGCAATCAGACATGACCAACCACCCCGCATATCTACAATTCAATTCAGCACAACAA CTTGTTTCCTATTGTGGTGGATTAGTAAACAACACAGAGATAATCCCTACGGATATGGGGGTTCGAAGGAACATGAATGT CCCTGTATCTATGCCTGAAACGTTTCTTGACTCATCATGTTTCACTGTAGGTGTTCCTTCTGTGTCTTGTAATGTTCATG TTCTAATGATTAATGTTCTAATGTTCACGTTCCAACTGATCTTAATTTTTAATTGCATGCACTGCAGCAAATTCTACCCT CCTTATCATGGGAAGGTGATTTCCAAAACCTCCAAAGTGTGGCTTTTGACCAAGGAAGATCATCATCCTTTCCTTCTCAG CCATTTACAGGTAGCTACAGATTCAGGACTTGTCAAATCACTTATTTTTCCTTAGCCTAAAAGTAGAAAGTAGAAACAAA GCAGAGTGGATTTTTATTGGTGATAGAGACATGGGACCCTACAGTTACTGATGAGACCTTTTTAATCAAAATGAAGCAAT TTTTTTCAAAAGGATCTGTTAATGTATTAAGGGCATATTACACAAAAAGATCAGTGCTAATTTTTATAGATAACTAACTT GTTTGTAATACAAGACAAAAATCATTTATGAGGTTGGAACTTTGAAGTTAATTGTACTTTGTGAAGTAAAGGGGGGTACA ATAAGCATGGTAGTCAGTTTGGACTCGTCGTGACACACAATCCAAAATACAGTAACTCCAGAAGCTACATTTTTTATCTT CTCCCAGAATTGATTATGAGGCTTCCCACCGTATAACCAAACACAAACCACCTATGAAGCTCCTCTTTTTGAAATTCTTG TATTTCTTTGGAAATTTGGGCGATGACTGAGTTAATGGTTTATCTTCAAGACTTTTAGGCCATTCCACAACAACCCTTAT CTTAGAATTATTTACCACTTAGAAAGTAGTTGAACTAGGCTACTTGTGAATGTTAATTCTGAAAGTGTTGTTTTATACCT CTTCTGCAGATTTGGTTGAAGCCAGTGACCTGAAGATGGAGATGTAAAGCAGATCTTCAATTATTATTTGTTGGATGAGC TCACTCCAAATGAATGCTTCTCATCAAGATTCTTTTTCATTTCAAGTACATAACATATATTTGTTGTACACTGCTCCGTA GTATAAATAAGATGATATTAATACCTGTTAACTTCAATCACCTTTTGAACAAAAAGAAAAGGTTGATTTATGAGCAGATA TGTGGCTAGGCGTCTAAACCAATGTACATAAGGGTAATTGATGGCAAGCTTATGCTGTTGCCTTCGGTAAAATGAAAGTA ACTTCAAGTGAATGCAATGAGAAGTTGTCAAACAAAAGTTTTATCAAAATTTTGTTAAGAGTGCTTGACTTGTAAACTTG TAAGAGTG
CDS sequence (LotjaGi3g1v0509000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCACTGTCTCAACACTTCAGGGACTGTGGGAGGTGGAGGAGGAGGAGCTTGTTCCGACATGACAGTGCTGGAAAG GCAAAGGGTAAGCAGCAAGAAGTGGCAGCATGAGCAGGAGCATGAGAATCAAGGCTATTTTTGTGGTGGTGGTGCTGATT CTGCGCTTGGTGAGGTGGTGGCTCGCTCTGTGAAACCTGACCCGGGTTTTGAAAACGGGTGGCCTGAATTGGGAAAGTTT GTTGTTGCGGGATTCGGGTCTGGGTTTGATGCTAGCTCTGCAATTTCAAGGACTTGTAGCAATGGTGACTTGGTTTCTGC TACCAAGAAGATGATGGGTTCCGTGAGTGGGAAAGAAAGCTTGAAGAAGAGGAAAGCTGATAATAAGGCTCAGAATTCCA ATTCCAAGGTTTTTGTGGAGAGTGATAGCAAAGACAAGAGGATCAAAGTGAGTGGTGAGGAAGGGGAATCCAAAACCACA GAGAAAACCAGCAACAAGAATACCAAGTCCTGCACAAACAGAAACAGCAGGGAAACTTCTGAGGATACTTCCAAGGAGAA TTCAAAAGGGTCTGAGGTTCAGAACCAAAAGCCTGAATACATTCATGTCCGAGCACGTCGTGGTCAAGCCACGGATAGTC ATAGCTTAGCTGAAAGGATTAGAAGGGAGAAAATTAGCGAGAGGATGAAGTATTTACAAGATTTAGTACCCGGTTGCAAC AAAATTGCAGGAAAAGCTGGAATGCTTGATGAAATCATTAACTACGTTCAGTCTCTTCAACGACAAGTTGAGTTCCTGTC AATGAAATTAGCTGCTGTAAATCCAAGGCTTGACTTCAACATTGATGAATTGTTTGTCAAAGAGGTGTTTCCTGCTTGTG CTCAAAGTTTTCCATCCATAGGGATGCAATCAGACATGACCAACCACCCCGCATATCTACAATTCAATTCAGCACAACAA CTTGTTTCCTATTGTGGTGGATTAGTAAACAACACAGAGATAATCCCTACGGATATGGGGGTTCGAAGGAACATGAATGT CCCTGTATCTATGCCTGAAACGTTTCTTGACTCATCATGTTTCACTCAAATTCTACCCTCCTTATCATGGGAAGGTGATT TCCAAAACCTCCAAAGTGTGGCTTTTGACCAAGGAAGATCATCATCCTTTCCTTCTCAGCCATTTACAGATTTGGTTGAA GCCAGTGACCTGAAGATGGAGATGTAA
Protein sequence (LotjaGi3g1v0509000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLHCLNTSGTVGGGGGGACSDMTVLERQRVSSKKWQHEQEHENQGYFCGGGADSALGEVVARSVKPDPGFENGWPELGKF VVAGFGSGFDASSAISRTCSNGDLVSATKKMMGSVSGKESLKKRKADNKAQNSNSKVFVESDSKDKRIKVSGEEGESKTT EKTSNKNTKSCTNRNSRETSEDTSKENSKGSEVQNQKPEYIHVRARRGQATDSHSLAERIRREKISERMKYLQDLVPGCN KIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFVKEVFPACAQSFPSIGMQSDMTNHPAYLQFNSAQQ LVSYCGGLVNNTEIIPTDMGVRRNMNVPVSMPETFLDSSCFTQILPSLSWEGDFQNLQSVAFDQGRSSSFPSQPFTDLVE ASDLKMEM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 98 | 385 | 288 | 2.7E-94 | – | |
PANTHER | 98 | 385 | 288 | 2.7E-94 | ||
MobiDBLite | 113 | 215 | 103 | - | – | |
MobiDBLite | 116 | 130 | 15 | - | – | |
MobiDBLite | 139 | 163 | 25 | - | – | |
MobiDBLite | 199 | 215 | 17 | - | – | |
Gene3D | 206 | 280 | 75 | 6.4E-14 | ||
CDD | 207 | 264 | 58 | 1.82266E-10 | ||
SUPERFAMILY | 207 | 278 | 72 | 1.44E-16 | ||
ProSiteProfiles | 209 | 259 | 51 | 15.32 | ||
Pfam | 213 | 260 | 48 | 1.5E-6 | ||
SMART | 215 | 265 | 51 | 2.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
Molecular function | Protein dimerization activity | The formation of a protein dimer, a macromolecular structure consists of two noncovalently associated identical or nonidentical subunits. |
Expression pattern of LotjaGi3g1v0509000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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