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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0509900 |
| Transcript ID | LotjaGi3g1v0509900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DUF241 domain protein; TAIR: AT2G17080.1 hypothetical protein (DUF241); Swiss-Prot: sp|P26162|BCHH_RHOCB Magnesium-chelatase subunit H; TrEMBL-Plants: tr|B0BLH3|B0BLH3_LOTJA CM0216.180.nc protein; Found in the gene: LotjaGi3g1v0509900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92724051..92725382) extracted from Lotus japonicus Gifu genome v1.2.
GCCAAATTAGAAATATTGAAAACAGAATTGTAACTGATGCAGTTACTTATAGGGTTATGGTCCCCAATTATAGACAACAC AGTAACGTGAAAAGTTTCTCCTCATCCCCATCAGAGGAAAACATCAGGAAACCCTAAGGGTGATCTACAATTGGAAGATC ACAACCCCAGATCCTTCAGCGATTCTCATGGCTCATTCAGGTACGCTTCCGCTCTAGATCTTCATCATGTTTTTCGGGTA TGGGTTAATCAAGTGTGGTTTAGGATTATGCTCCTATTTTCTATATGGGTAGAAAAGCATGTGGTTAGGAATAAATCCTT ATTTGTTAGAAACTTACAGAGATTCCTTGTGTCTCCACCACTCTTAATATAAATTGAGCAAATGGCATTGGAAGGAAGAT AAATCCATAGCCTGAATTCTAAGTCAACATCAAGGTTTCTCTTCTCCTTAGGAAAAAAATGGCAAAATCCTCTTTCCATG CTCGCTCAAACAGCTTTCCCTCAAGGCCTCACCCTCTCATTCTACAATGCAATGAACACTTGGATAGGCTAAGAGCTTCC CAAGAAACTTCTTCATCTTCCTTGCTCAGCCATAAATTAGGAGGGTTGCGCGATCTGCATGATTGTGTTGAAAACTTGAT CCAACTTCCCCTCACTCAAGAAGCAGTTCTCCATGAGAAGAACTGTGTGAATGAGCTTTTGGATGGATCCTTGAGACTCT TAGACATGTGCACAACCGCGAAAGACTCTCTACTGCATACAAAAGAGTGCACACGCGAGCTTCAATCGATTATGAGAAGA AGAAAGGGTGGTGAAGTGGAGCTTAGGGCAGAGGTTAAAAAATTCTTGGCATCTAGGAAGGTGGTGAGAAAGGCTATCTC AAAAGCCTTGTCAAATTTGAAGGATACTACTACAAAAGACAATCAAAATGTAGCTTTGGTTAGCTTATTACAAGACATGG AAGTGGTGACTCTATCAACATTCCAGGAACTTCTGCAATTTATCTCAGGAACAACACAATCAAAGTCAAGGAACTGGCTT TTGATTTCCAAGCTAATGCAGACCAAGAAAGTAGCATGTTCACAATTGGCAGATGAAAGTGAATTTGCACAACTTGATGA AGCATTGCAGTCCTGCATATTTGGTCAAACAAGCAAATTTGAAGACATGAATAAGCTGCAAAATCACTTGGAGAAAGTGG AGTTGCTTATTCAGGATCTTGAAGAGGGTCTTGAGTTTGTGTTGAGGCGTTTGATTAAGATTAGAGTAGCCCTTCTTAAC ATCCTTAATCACTAGTTAAGATTATCTTGGGCATCAAAATTTTGTAATGGTG
CDS sequence (LotjaGi3g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAAAATCCTCTTTCCATGCTCGCTCAAACAGCTTTCCCTCAAGGCCTCACCCTCTCATTCTACAATGCAATGAACA CTTGGATAGGCTAAGAGCTTCCCAAGAAACTTCTTCATCTTCCTTGCTCAGCCATAAATTAGGAGGGTTGCGCGATCTGC ATGATTGTGTTGAAAACTTGATCCAACTTCCCCTCACTCAAGAAGCAGTTCTCCATGAGAAGAACTGTGTGAATGAGCTT TTGGATGGATCCTTGAGACTCTTAGACATGTGCACAACCGCGAAAGACTCTCTACTGCATACAAAAGAGTGCACACGCGA GCTTCAATCGATTATGAGAAGAAGAAAGGGTGGTGAAGTGGAGCTTAGGGCAGAGGTTAAAAAATTCTTGGCATCTAGGA AGGTGGTGAGAAAGGCTATCTCAAAAGCCTTGTCAAATTTGAAGGATACTACTACAAAAGACAATCAAAATGTAGCTTTG GTTAGCTTATTACAAGACATGGAAGTGGTGACTCTATCAACATTCCAGGAACTTCTGCAATTTATCTCAGGAACAACACA ATCAAAGTCAAGGAACTGGCTTTTGATTTCCAAGCTAATGCAGACCAAGAAAGTAGCATGTTCACAATTGGCAGATGAAA GTGAATTTGCACAACTTGATGAAGCATTGCAGTCCTGCATATTTGGTCAAACAAGCAAATTTGAAGACATGAATAAGCTG CAAAATCACTTGGAGAAAGTGGAGTTGCTTATTCAGGATCTTGAAGAGGGTCTTGAGTTTGTGTTGAGGCGTTTGATTAA GATTAGAGTAGCCCTTCTTAACATCCTTAATCACTAG
Protein sequence (LotjaGi3g1v0509900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSSFHARSNSFPSRPHPLILQCNEHLDRLRASQETSSSSLLSHKLGGLRDLHDCVENLIQLPLTQEAVLHEKNCVNEL LDGSLRLLDMCTTAKDSLLHTKECTRELQSIMRRRKGGEVELRAEVKKFLASRKVVRKAISKALSNLKDTTTKDNQNVAL VSLLQDMEVVTLSTFQELLQFISGTTQSKSRNWLLISKLMQTKKVACSQLADESEFAQLDEALQSCIFGQTSKFEDMNKL QNHLEKVELLIQDLEEGLEFVLRRLIKIRVALLNILNH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 277 | 276 | 1.0E-139 | – | |
| PANTHER | 2 | 277 | 276 | 1.0E-139 | – | |
| Pfam | 46 | 275 | 230 | 8.5E-71 | ||
| Coils | 237 | 264 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0509900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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