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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0510600 |
| Transcript ID | LotjaGi3g1v0510600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ras-related protein Rab-11A; TAIR: AT5G65960.1 GTP binding protein; Swiss-Prot: sp|Q6PD74|AAGAB_HUMAN Alpha- and gamma-adaptin-binding protein p34; TrEMBL-Plants: tr|B0BLH9|B0BLH9_LOTJA CM0216.310.nc protein; Found in the gene: LotjaGi3g1v0510600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92765782..92768805) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCAAACATTAACTAAAAATTAAGCTTTCTTTTTCAACCTTGCATCACACGAGTTCATGTAAGCTATAAGTAAAAACT AAAAGCAGTATTTTTTATCAACAAATTAAACTAAATGCTGGGTGAACAAAAAAAAAACAATATCCAAATGTTGGGTCGAA AGGCCCAGTCCTCCAAACACTTCCAGAAAAAGAAAATAAACTGGTTTGGGCTTTGGGGGTCAATCGCCATCTGTTGTGTA GAACTAGTCGCAGCACCACACTGTGTCGGAACGGAAGACATTGACAATCGGAACAACAACAACAAGAAGAACAAGAACAA GGGAACCGTAACTGAATCTCATCTCTGCTCATGGATTCTACCGAAGCTCTAACTGATCCGGTCTCTCTGGAATCCCGACC CGGAATCTTCGTCATCGGATCCTCCAACGTCGGCAAACGCACCCTCCTATCCCGTAACACACACACTCTCTCTCTCTGGT TCCACTTATTCTAAGCCTTGGATTGTCATGTCTGATCTGTTCATCATTTTTTTGAATTTTGATTTGCTATGCTTTGTTGA TGTTGACTGTAGGATTGCTCTCTGTTGATTGTGAAGATGCTTTTGATTCAGATTCTCAAGTAAATGTCCATGGGTATGTA TGTATCTATGTTTCACCATCTATTATGCTCACACACACCAAATTTGCTATAGTATGGGGGTTGCTACACTGGTATTTAAA CACACATTAATATGTAGAATACAAATTCTAAATGGCCCTTAATGCTATGTTTCATTTAGAAATACATGTGACAGGTGGAC TATCAACAATAAGTTTAATCATTTCATCTCACATTTTGCTTATACATGTGTTCAAATTTTCTTAGTGTATATTTGGTCAT GGAATCAACAGGTGGACTATCAACAATAAGTACTATAGTGCTGATGTTTCTGTTTGGATGGCTCATCTTCATGAAGATTT TTCTGTTCGAGACCTGCCCGTGTTTCAACGAATGACTGCTTTGGTGATGGTTTTTGACATGAATGATGTTAGTTCCTTCC TTCACATGGTTCTCTTTTAATTTGTAATGTTTTTATCGCTTATCATTTAATCCATGGTGAAGGTTTTATTATATTCACTG TTGTTGTTTTGTTTTCCATTGCATTAGCAGTGACGTATCACATATGTATGGTATTGTTTAATCGTTTTTCTCATTTTGTG CAGCTATCCTCCCTAACTGCACTACAAGGTTGGGTATCGCACACTGATATTCAAAACTTTGAGATATTACTATGTATTGG AAACAAAGTGGACCTGGTTCCTGGTCATCCAGCTCATGCTGAATACAGAAGACGTTTGCTGAAACTTGAAGACTCTTCTG CCAATCTTGATTTAGAATTCTCCGAGTATGGAATATCAGAAAGTGAAGGAACTAGCTTATTGGGGGATGAAGAGCCATCA TGGGATATTCGAAAGTCTTGCTTGGAATGGTGCACTGAGAACAATATCGAGTTTGTTGAGGCTTGTGCTTCCAATGCTGA TTTTGACAAATGTAATACCTCACTTCCTGTTTTCGTACGCTGGTCTATAACATATTGCAAACAAGACTCTTTTTTTTTCA GGTTTAGATATAGATGAGGCATACTCAATTATAATACATTATTGTTGAGTGAGAGAGAGGACTTAAATGCCAATGAGTTA TTTGAAAGATATTTATAAAATATCATTTAGGATCACCATCCTGATCAAAACCTGATGGACAATGGAAAATTATTTAGAAA TTATACAATTTCCATACATATATTGCATTATTGACATAAAAGAATGCTGTTTACAGGCTTATCTGTAGATGGTGATTTAC AAGGAGTTGAACGTCTCTATGGTGCACTTTCTGCTCATATGTGGCCTGGAATGATATTAAAATCTGGTGATAGGATAAGT CAACCATCATTCCCTGAGAAAGAAGGTCTCTTTTTCTTTCTATTTTATTTCAGGAGCATGCTGTTAGCCACTTACAATGA TGTAGAATAAACGTGAGTCTAACTTTGGTTTATCCTTTTTCTTCTCTTCAGATTTATCTTCAGAAGAATCTGATTATGAT CAGGAGTACGAAGTTTTATCAGCTGGCTCAGCCGATCCCTGGCATGATACTGAACAAGAATGGGTTTGTGCAACTTCCTC AGATGCAGGAGGATCAGCTCCTCAAGACAATTCCAACACAGGTCGTGAACATGTGGATGAAAGTAAATCTAAAAAAGAGT TGCATACCACAACCTCATGCACTGATCAGGATGAGAATGACAAGGAAGTAGTGCACAATATTGTGGATTCTGAAGGGGAT GTGAAGGAAGATGATGGTGAATGTCTTGAATTAGAGGATTTGGAACAGTTGATGTCTGAGATTGGAAATATGCGGGACGG CCTAAGATTGATGCCTGATTTTCAAAGAAGGGAAATGGCTGCAAAGCTGGCTATGAAAATGGCTTCCATGTTTGGGGGAG AGAGTGATGAGGAAATTTAGTTGAATATAGGATGCTAGTTATAAGTGTCAGGATACATCGATGAACATCATTAGCAGTAC TTTTAGACTCATCAGTGGAAGAAGATGAGCAACCTCGATTGCCGAAAGATAAGAAGCTCCTTTTATGCATCTTCTCTGCT ACCGATTGGTTGTTGCTGAGCGTGATTCAAGATCAATTTATCCTGTTTTGTAATACACATTATTTGTCACAATAGAGGTT ATTGTATTTGAAATTATGTTATCATATAAATTACCCTGCATCACTTAACTCTGGTTCAATGTTGATGGCTTTTGTCAGAC TGTTTAATAGCCAATTTTGTGGAGTAGAACATTTTGTTAACATATAAAATAAGTCTAGTCATGTTCATGGTACTTAACTT GATGGCAGTGTGGTGACCAAACTTGGTTGGCTGTGATGTCGGCACTTGCCGGAATTTGTAAGTGGGAAGATCGATAGAAA AGTACATTTCATGTTCTAACTTCTAACTACGTGGACATAATAACAGTCACTGGGTGATTAGTTT
CDS sequence (LotjaGi3g1v0510600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCTACCGAAGCTCTAACTGATCCGGTCTCTCTGGAATCCCGACCCGGAATCTTCGTCATCGGATCCTCCAACGT CGGCAAACGCACCCTCCTATCCCGATTGCTCTCTGTTGATTGTGAAGATGCTTTTGATTCAGATTCTCAAGTAAATGTCC ATGGGTGGACTATCAACAATAAGTACTATAGTGCTGATGTTTCTGTTTGGATGGCTCATCTTCATGAAGATTTTTCTGTT CGAGACCTGCCCGTGTTTCAACGAATGACTGCTTTGGTGATGGTTTTTGACATGAATGATCTATCCTCCCTAACTGCACT ACAAGGTTGGGTATCGCACACTGATATTCAAAACTTTGAGATATTACTATGTATTGGAAACAAAGTGGACCTGGTTCCTG GTCATCCAGCTCATGCTGAATACAGAAGACGTTTGCTGAAACTTGAAGACTCTTCTGCCAATCTTGATTTAGAATTCTCC GAGTATGGAATATCAGAAAGTGAAGGAACTAGCTTATTGGGGGATGAAGAGCCATCATGGGATATTCGAAAGTCTTGCTT GGAATGGTGCACTGAGAACAATATCGAGTTTGTTGAGGCTTGTGCTTCCAATGCTGATTTTGACAAATGCTTATCTGTAG ATGGTGATTTACAAGGAGTTGAACGTCTCTATGGTGCACTTTCTGCTCATATGTGGCCTGGAATGATATTAAAATCTGGT GATAGGATAAGTCAACCATCATTCCCTGAGAAAGAAGATTTATCTTCAGAAGAATCTGATTATGATCAGGAGTACGAAGT TTTATCAGCTGGCTCAGCCGATCCCTGGCATGATACTGAACAAGAATGGGTTTGTGCAACTTCCTCAGATGCAGGAGGAT CAGCTCCTCAAGACAATTCCAACACAGGTCGTGAACATGTGGATGAAAGTAAATCTAAAAAAGAGTTGCATACCACAACC TCATGCACTGATCAGGATGAGAATGACAAGGAAGTAGTGCACAATATTGTGGATTCTGAAGGGGATGTGAAGGAAGATGA TGGTGAATGTCTTGAATTAGAGGATTTGGAACAGTTGATGTCTGAGATTGGAAATATGCGGGACGGCCTAAGATTGATGC CTGATTTTCAAAGAAGGGAAATGGCTGCAAAGCTGGCTATGAAAATGGCTTCCATGTTTGGGGGAGAGAGTGATGAGGAA ATTTAG
Protein sequence (LotjaGi3g1v0510600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSTEALTDPVSLESRPGIFVIGSSNVGKRTLLSRLLSVDCEDAFDSDSQVNVHGWTINNKYYSADVSVWMAHLHEDFSV RDLPVFQRMTALVMVFDMNDLSSLTALQGWVSHTDIQNFEILLCIGNKVDLVPGHPAHAEYRRRLLKLEDSSANLDLEFS EYGISESEGTSLLGDEEPSWDIRKSCLEWCTENNIEFVEACASNADFDKCLSVDGDLQGVERLYGALSAHMWPGMILKSG DRISQPSFPEKEDLSSEESDYDQEYEVLSAGSADPWHDTEQEWVCATSSDAGGSAPQDNSNTGREHVDESKSKKELHTTT SCTDQDENDKEVVHNIVDSEGDVKEDDGECLELEDLEQLMSEIGNMRDGLRLMPDFQRREMAAKLAMKMASMFGGESDEE I
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 400 | 390 | 1.2E-120 | ||
| SUPERFAMILY | 17 | 132 | 116 | 5.75E-12 | ||
| Pfam | 20 | 153 | 134 | 1.5E-7 | ||
| Pfam | 216 | 388 | 173 | 4.0E-20 | – | |
| MobiDBLite | 239 | 263 | 25 | - | – | |
| MobiDBLite | 288 | 328 | 41 | - | – | |
| MobiDBLite | 302 | 328 | 27 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of LotjaGi3g1v0510600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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