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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0512100 |
| Transcript ID | LotjaGi3g1v0512100.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nascent polypeptide-associated complex subunit beta; TAIR: AT1G17880.1 basic transcription factor 3; Swiss-Prot: sp|Q9SMW7|BTF3_ARATH Basic transcription factor 3; TrEMBL-Plants: tr|I3SMY5|I3SMY5_LOTJA Nascent polypeptide-associated complex subunit beta; Found in the gene: LotjaGi3g1v0512100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:92916324..92919455) extracted from Lotus japonicus Gifu genome v1.2.
AGACTAGGGTTTTTGCAGGCGTTGATGGTATAAAAACGAGTCCTTATCTCATCGTTTCGTTTAGGTCTGAAGGTTCCACT GTGTCCCAAACCACTGAGCTCATACCAACACAAAGGTACCACCGCCTATACCATTTCAACCATTTTTCATCGCTCGCGTT GTTCCTTGTAATCGATTTATGTTTTTCGATTTTCCCAGAATCGATTTGATGTTTAATGTTTTTCCCTGTGTTCTGTTGGA TTAATCTTCTCTCTCTCGAAATTGCCCTAATCATTCATTTTTGTTGTTGGTTGAAACTGTTAGATATTGAACTATGATGG TTTCTGTGTATTAATTTTTTTTATATAGAAGTGAATTGGTGATCTATGGAGTTAGTAGCATTTGATTAGTTTCAGTTAAT GGTGGGAACTGTTTGGTTTTGCCTCCGATGATGAACAACTGTGTGTTTTTTTCTGAGTTGTTTCCATGCTGAAAATATAG TGGAGACCTGAACTGAGGAGGCTAGTTATAAGAGCATTTGGGGCTATATAGGAGATGTTTTTTAGATTGTCTGTGCTGAG TGATGAGTGCTTCATCTACTGTCTGTGTGATGTCAGATGTTTTGGTTATCTTTTCTTGGATATTGATCTAGGGTAACATG CATGTCAAAGCTGAAATTAGCTTGATTTTAACTTGGGATGGTCACCCTAATATGATATGATATAGTTGAGTATGCATTTG CAGCTTGACAAGTGCCTATTCCTGTTTTAATGCGGATTACATCATCTTTTGAAATCTCTGGTTTTCATATGGATATAGGA AACATCAAATTTACATCTGTTATGAATTTGTTTGTGTAGTTAAGCTTTTGCTGTCCCTTCTGTCTACTTCATATGAAATG GCTACAGCTCTGTTGTTAGCATTTGTGTCATGTATATTTGAATTATAAATGTAGCCTGTTTATACATCTTTTTCAGTTCT ATACATTTTAATAATTGTTGCATCTTTGTTGAGATATTTTTTTGTTACATTTATTTACTCATTTATTTGACTTGACTTTG ATCCAGATGAATCGGGAAAAATTGATGAAGATGGCCGGTTCAGTTCGAACTGGTGGAAAGGGTACAGTGAGAAGGTGAAT TAATATATGAAAGTTACTTCCTTTTCAAGTAATGTTAATATTGGATTTATCATGATTTGCTCTTCAAAATTCTTTGATGG ACTTAGCACACATCACTGGAGATAAACACCAGGCATATGTTGACAAGAATTCTTTTGCTTATATTTCTGCTTCCCTACAG CCATATTGAGAATGTGTAACCAACACTAGCAATATTTTTTTTTAAATGAAACATTAATCTACAGTTTTGAATGCATTGCT TCAAGAGTACTTCTTTGTTTAGCACACATAGAATGCAACGGTTGAATTTAATTTAATCATGATATTTCCCCTTGTTTGTT TATTTTAGAAAGAAGAAGGCTGTTCACAAGACAACAACCACCGATGATAAAAGGCTACAGAGCACCCTGAAGAGAATAGG GGTGAATGCCATCCCCGCAATTGAGGAGGTCAACATCTTCAAGGATGATGTAGTTATCCAGTTTCTAAACCCCAAAGGTA ACATCAGTTCGTAGTACTTAGTATTTAGACCATTTATATTTTTTATATACTAGGGCATGTATATAATTTTGAAGATAACT GACTCTGAAGCTTGATTTCTTTTCAGTTCAAGCATCTATTGCTGCTAATACTTGGGTTGTTAGTGGTGCACCTCAAACAA AGAGTGAGTGACTCCTATCTATTTATGTCTTGTTGTATAAGATAGCATTGCCAACATATTTGTTTATGTGTCAAGAGTAT GCAAATAATAATCATAGCTGCATCAATTACAGGCTTTCCAAGTTATTACCTTTAAATATGTCAGATCCTTTGTGTATTTC CTTACTCATTGGAATGTCCCTTGTTTTTCTTATATTTTTGGAGTGTATTACCTTTAAATACGTCAGATCCTTTGTGTATT TCCTTACTCATTGGAATGTCCCTTGTTTTTCTTATATTTTTGGAGTGTACTAGGGCTGTTTCCCAAAATTTCTAGACCAA TTTTACAGGACCTTTTCCCCTGACTTTATTCTAGTTTAGTTTTACAAACATTTGTAGAAGAATTTCCAAATATGCACTTA CTACTGTTTTGTGGTGTTTGAATATTGACTGGATTGGTATCAAAAATTGATATAAAGTTTTCCCATCTACAGAGTTGCAG GATATACTCCCCAGTATCATCCACCAATTAGGTATGTGCTTTGTATGTTTTTCAAAGTTGTGGTCTTTCTTTATTGATCC TCCCTGCTTAAACACTTCGATTATCTAAATGCAGGACCAGATAATTTGGAAAACCTGAAAAAGCTAGCTGAACAGTTTCA GAAGCAGGCTCCTGAAGCAGGTGCTGCCGATTCAACCGCAGCACAAGAGGAGAATGATGATGACGTCCCAGAGCTTGTTC CAGGGGAGACTTTTGAGACAGTTGCTGAGGAGGAGACCAAGGCTACTTCTTAGAGTTTTATTGTGCCATTTATATATCCT GTTTTTTTTTCGAAAAAATTCTTCATTTTGAAATTTTAAGTATTTCAGGTGGTGTTCAGTTCTCCTGTCATATCCTTTAG ACTGTGCAAACTCTCTTCAAATCAGCTTTCCTTAAGAAAAATGTTCCATTTTTTCAACTTTTTTGCTTGCGTAGGCTGAC ACTTTACCACCATTAATTTGAAGTTTTTTTGTGGCATACCTTAGAGAAGATAAATTCTGAACACTTTCTAATTCACTTCA TTGTTAATCTTTTGTCAAAACTAATGTAGGGAACTTCCAAATTTGTTAAGTTGTAGATGCAACTTATTTGATCACACAAA GGTTTTGAATAGTTACAATTAATTGTAATTAATGTACCAGTGAAATGCTGGTTATGAGGCTATTCTAAACTTTAAAAAGC ATCAGTAGTTGCTCCACATTAATAACTAAGTAGAATTTGTGCAACATAAATAACTAGCATAATATATGATGTTTAAAATT TGAACCTAATTTCAATTTAAATTGTAAACAATTAAATCAAACCAACTTTCGCCTTTTTTCTTAGAAGGTCGAATATATGG TAATAAAATGAG
CDS sequence (LotjaGi3g1v0512100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATCGGGAAAAATTGATGAAGATGGCCGGTTCAGTTCGAACTGGTGGAAAGGGTACAGTGAGAAGAAAGAAGAAGGC TGTTCACAAGACAACAACCACCGATGATAAAAGGCTACAGAGCACCCTGAAGAGAATAGGGGTGAATGCCATCCCCGCAA TTGAGGAGGTCAACATCTTCAAGGATGATGTAGTTATCCAGTTTCTAAACCCCAAAGTTCAAGCATCTATTGCTGCTAAT ACTTGGGTTGTTAGTGGTGCACCTCAAACAAAGAAGTTGCAGGATATACTCCCCAGTATCATCCACCAATTAGGACCAGA TAATTTGGAAAACCTGAAAAAGCTAGCTGAACAGTTTCAGAAGCAGGCTCCTGAAGCAGGTGCTGCCGATTCAACCGCAG CACAAGAGGAGAATGATGATGACGTCCCAGAGCTTGTTCCAGGGGAGACTTTTGAGACAGTTGCTGAGGAGGAGACCAAG GCTACTTCTTAG
Protein sequence (LotjaGi3g1v0512100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNREKLMKMAGSVRTGGKGTVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDVVIQFLNPKVQASIAAN TWVVSGAPQTKKLQDILPSIIHQLGPDNLENLKKLAEQFQKQAPEAGAADSTAAQEENDDDVPELVPGETFETVAEEETK ATS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 1 | 160 | 160 | 5.8E-122 | – | |
| PANTHER | 1 | 160 | 160 | 5.8E-122 | ||
| ProSiteProfiles | 33 | 97 | 65 | 15.614 | ||
| SMART | 36 | 91 | 56 | 1.7E-20 | ||
| Pfam | 36 | 91 | 56 | 8.7E-19 | ||
| Gene3D | 48 | 104 | 57 | 1.6E-26 | ||
| MobiDBLite | 120 | 163 | 44 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0512100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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